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Aims: Lycii Fructus (LF) is considered as a 'superfood' due to its health benefits and delicious tastes, which has gained popularity worldwide. However, LF is also a proper host for fungal growth due to its abundant nutrients. Fungal contamination seriously affects the quality and safety of LF and poses threats to consumer health. Methods and Results: In this study, a total of 15 LF samples were collected from five provinces in China, and were divided into five groups based on the collection areas. Fungal contamination in LF was investigated by targeting the internal transcribed spacer 2 region using Illumina Miseq PE300 platform, and the differences of fungal community in groups based on collection areas were compared. Results showed that the fungal contamination was detected in all the 15 LF samples. Ascomycota, Dothideomycetes, Pleosporales and Pleosporaceae were dominant at the phylum, class, order and family levels, respectively. At the genus level, Alternaria, Cladosporium and Fusarium were the three dominant genera. In all, 24 fungal species were identified. Among which, two species, namely Penicillium oxalicum and Trichothecium roseum, were potentially toxigenic. Conclusions: All 15 LF samples were detected with fungal contamination. The differences of fungal community in LF samples collected from different areas were observed. DNA metabarcoding was demonstrated as an efficient method to monitor the fungal contamination in LF. Significance and Impact of the Study: This work comprehensively reveals the fungal diversity and composition in LF and provides early warning for potential mycotoxin contamination. [ABSTRACT FROM AUTHOR]

Morindae Officinalis Radix (MOR) and Alpiniae Oxyphyllae Fructus (AOF) have been widely used as dietary supplements and traditional herbal medicines for centuries. Fungal and mycotoxin contamination in MOR and AOF has been reported recently. In this study, fungi in MOR and AOF are first investigated using DNA metabarcoding, and the differences in fungal microbiome between moldy and non−moldy samples are analyzed. The results show that Ascomycota is the most prevailing fungus at the phylum level in MOR and AOF with relative abundances of 49.53–94.32% and 14.81–81.85%, respectively. Penicillium (1.86–76.14%), Cladosporium (1.82–56.65%), and Trichoderma (0.12–19.71%) are the dominant genera in MOR. Penicillium (0.27–56.06%), Papiliotrema (0.04–51.71%), and Cladosporium (3.08–44.41%) are the dominant genera in AOF. Two potential toxigenic fungi were detected, namely, Trichoderma atroviride and Fusarium equiseti. Moreover, the differences in fungal communities between moldy and non−moldy samples were monitored. In conclusion, DNA metabarcoding can be used to assess the fungal microbiome in edible medicinal herbs, thereby providing a basis for ensuring food safety and drug efficacy. [ABSTRACT FROM AUTHOR]

Cistanches Herba (CH), known as Roucongrong, is a widely used health food supplement and medicinal herb. In recent years, fungal and mycotoxin contamination has affected the quality and safety of CH, posing a potential threat to consumer health. In this study, the Illumina MiSeq PE300 platform and targeted the internal transcribed spacer 2 sequences were used to investigate fungal communities in CH. The differences in the fungal communities of samples from different collection areas and processing methods were analyzed. As a result, 606 ASVs were obtained and were further classified into six phyla, 27 classes, 56 orders, 110 families, and 167 genera. Basidiomycota and Rhizopodaceae were the dominant phylum and family, respectively. Rhizopus (0%–43.72%), Aspergillus (0%–19.55%), and Fusarium (0%–20.27%) were the most dominant genera among the identified genera. Meanwhile, 13 species were identified, including two potential toxigenic fungi Aspergillus terreus and and Mucor circinelloides. In addition, variations in the composition of the fungal communities, the diversity of fungi, their trophic modes, and the functional guilds in CH samples from four different collection regions and two processing methods were observed. This work provides useful information for controlling fungal contamination in herbs and foods to ensure food safety and human health. [Display omitted] • Fungal communities of Cistanches Herba were analyzed by high–throughput sequencing. • Rhizopus , Aspergillus , and Fusarium were the most dominant genera among the identified genera. • Collection areas and processing methods affect Cistanches Herba the fungal communities. [ABSTRACT FROM AUTHOR]

The co-occurrence of fungi and mycotoxins in various foods has been frequently reported in many countries, posing a serious threat to the health and safety of consumers. In this study, the mycobiota in five types of commercial bee pollen samples from China were first revealed by DNA metabarcoding. Meanwhile, the content of total aflatoxins in each sample was investigated by high-performance liquid chromatography with fluorescence detection. The results demonstrated that Cladosporium (0.16 %–89.29 %) was the most prevalent genus in bee pollen, followed by Metschnikowia (0–81.12 %), unclassified genus in the phylum Ascomycota (0–81.13 %), Kodamaea (0–73.57 %), and Penicillium (0–36.13 %). Meanwhile, none of the assayed aflatoxins were determined in the 18 batches of bee pollen samples. In addition, the fungal diversity, community composition, and trophic mode varied significantly among five groups. This study provides comprehensive information for better understanding the fungal communities and aflatoxin residues in bee pollen from different floral origins in China. [Display omitted] • The mycobiota and aflatoxins in five types of bee pollen from China were firstly revealed. • Cladosporium, Metschnikowia, Kodamaea, Penicillium, and Alternaria were dominant genera. • Significant differences in fungal community were found among different groups. • Potential toxigenic fungus Penicillium paxilli were detected. • None of the samples had quantifiable values for the aflatoxins. [ABSTRACT FROM AUTHOR]

Myristicae Semen (nutmeg) has been extensively used for a long time because of its pharmaceutical properties and edible values. However, nutmeg is susceptible to fungi and mycotoxin contamination under suitable conditions during growing or post-harvest, thereby posing considerable hazards to consumers and resulting in significant economic losses. In this study, the surface fungi of nutmegs collected from producing areas and commercial markets were investigated for the first time by targeting the internal transcribed spacer 2 region using an Illumina MiSeq PE250 platform. Fungal contaminations were detected in all 13 tested samples. Aspergillus was the most prevailing fungi at the genus level with the relative abundance of 4.37%–82.81%, followed by Xerochrysium (0.36%–55.18%), Xeromyces (0.87%–86.38%), Hyphopichia (0.06%–29.14%), and Alternaria (0.03%–52.28%). Meanwhile, 108 fungal taxa were identified at the species level with six potential mycotoxin-producing fungi, such as Aspergillus fumigatus , Penicillium steckii , and Penicillium capsulatum. The differences between two groups of fungal communities were monitored. In conclusion, amplicon sequencing features a wide application prospect for fungal community analysis in spices and herbs and provides an early warning for subsequent potential mycotoxin biosynthesis. • This is the first report on fungal contamination in nutmeg using high-throughput sequencing. • Six potential mycotoxin-producing fungi were detected. • The fungal communities in two nutmeg groups exhibited statistically significant difference. [ABSTRACT FROM AUTHOR]

Cassiae Semen (CS) has been widely used as roasted tea and traditional Chinese medicine for decades. However, CS is easily contaminated by fungi and mycotoxins during pre-harvest and post-harvest process, thus posing a potential threat to consumer health. In this study, we used the Illumina MiSeq PE300 platform and targeted the internal transcribed spacer 2 sequences to survey the occurrence of fungi in raw and roasted CS samples. Results showed the fungal contamination in all 12 test samples. Ascomycota was the prevailing fungus at the phylum level, with the relative abundance of 66.50%–99.42%. At the genus level, Aspergillus , Cladosporium , and Penicillium were the most dominant genera, accounting for 0.66%–85.51%, 0.20%–29.11%, and 0.11%–32.92% of the fungal reads, respectively. A total of 68 species were identified, among which six potential toxigenic fungi belonging to Aspergillus , Penicillium , Candida , and Schizophyllum genera were detected. Moreover, differences in fungal communities were observed in raw and roasted CS samples. In conclusion, amplicon sequencing is feasible for analyzing fungal communities in CS samples, which provides a new approach to investigate the fungal contamination in edible-medicinal herb, thereby ensuring food safety and drug efficacy. • Fungal contamination in medicinal and edible Cassiae Semen (CS) was analyzed based on high-throughput sequencing • Six potential toxigenic fungi belonging to Aspergillus , Penicillium , Candida , and Schizophyllum genera were detected • Differences in fungal communities were observed in raw and roasted CS samples [ABSTRACT FROM AUTHOR]