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Climate change–driven permafrost thaw has a strong influence on pan‐Arctic regions, via, for example, the formation of thermokarst ponds. These ponds are hotspots of microbial carbon cycling and greenhouse gas production, and efforts have been put on disentangling the role of bacteria and archaea in recycling the increasing amounts of carbon arriving to the ponds from degrading watersheds. However, despite the well‐established role of fungi in carbon cycling in the terrestrial environments, the interactions between permafrost thaw and fungal communities in Arctic freshwaters have remained unknown. We integrated data from 60 ponds in Arctic hydro‐ecosystems, representing a gradient of permafrost integrity and spanning over five regions, namely Alaska, Greenland, Canada, Sweden, and Western Siberia. The results revealed that differences in pH and organic matter quality and availability were linked to distinct fungal community compositions and that a large fraction of the community represented unknown fungal phyla. Results display a 16%–19% decrease in fungal diversity, assessed by beta diversity, across ponds in landscapes with more degraded permafrost. At the same time, sites with similar carbon quality shared more species, aligning a shift in species composition with the quality and availability of terrestrial dissolved organic matter. We demonstrate that the degradation of permafrost has a strong negative impact on aquatic fungal diversity, likely via interactions with the carbon pool released from ancient deposits. This is expected to have implications for carbon cycling and climate feedback loops in the rapidly warming Arctic. [ABSTRACT FROM AUTHOR]

Thermokarst activity at permafrost sites releases considerable amounts of ancient carbon to the atmosphere. A large part of this carbon is released via thermokarst ponds, and fungi could be an important organismal group enabling its recycling. However, our knowledge about aquatic fungi in thermokarstic systems is extremely limited. In this study, we collected samples from five permafrost sites distributed across circumpolar Arctic and representing different stages of permafrost integrity. Surface water samples were taken from the ponds and, additionally, for most of the ponds also the detritus and sediment samples were taken. All the samples were extracted for total DNA, which was then amplified for the fungal ITS2 region of the ribosomal genes. These amplicons were sequenced using PacBio technology. Water samples were also collected to analyze the chemical conditions in the ponds, including nutrient status and the quality and quantity of dissolved organic carbon. This dataset gives a unique overview of the impact of the thawing permafrost on fungal communities and their potential role on carbon recycling. Measurement(s) carbon dioxide • methane • dissolved organic carbon • iron(2+) • iron(3+) • total phosphorous • Nitrate Measurement • sulfate • nitrite • ammonium • dissolved nitrogen atom in water • specific ultraviolet absorbance SUVA254 • spectral slope S289 • freshness index BIX • humification index HIX • fluorescence index FI • hydrogen to carbon ratio • oxygen to carbon ratio • m/z Technology Type(s) gas chromatography • total organic carbon analyzer • spectrophotometer • ion chromatography • total nitrogen analyzer • spectrofluorimeter • high-resolution mass spectrometry Factor Type(s) sampling site Sample Characteristic - Organism fungal sp. Sample Characteristic - Environment permafrost • pond water • sediment surface Sample Characteristic - Location Siberia • Sweden • Region of Northern Quebec • State of Alaska • Greenland Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.14896713 [ABSTRACT FROM AUTHOR]