9 results on '"Sanne van Gastelen"'
Search Results
2. A meta-analysis of effects of 3-nitrooxypropanol on methane production, yield, and intensity in dairy cattle
- Author
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Ermias Kebreab, André Bannink, Eleanor May Pressman, Nicola Walker, Alexios Karagiannis, Sanne van Gastelen, and Jan Dijkstra
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Dietary Fiber ,Rumen ,Dairy & Animal Science ,Animal Nutrition ,3-nitrooxypropanol ,Food Sciences ,Animal Production ,Genetics ,Animals ,Lactation ,Nutrition ,methane ,Ruminants ,Dietary Fats ,Animal Feed ,Diervoeding ,Diet ,Climate Action ,meta-analysis ,Milk ,WIAS ,dairy ,Cattle ,Female ,Animal Science and Zoology ,Food Science - Abstract
Ruminants, particularly dairy and beef cattle, contribute to climate change through mostly enteric methane emissions. Several mitigating options have been proposed, including the feed additive 3-nitrooxypropanol (3-NOP). The objectives of this study were to explain the variability in the mitigating effect of 3-NOP and to investigate the interaction between diet composition and 3-NOP dose, using meta-analytical approaches. Data from 13 articles (14 experiments) met the selection criteria for inclusion in the meta-analysis, and 48 treatment means were used for the analysis. Mean differences were calculated as 3-NOP treatment mean minus control treatment mean and then expressed as a percentage of the control mean. Three types of models were developed: (1) one including 3-NOP dose, overall mean, and individual covariate; (2) a combination of neutral detergent fiber (NDF), 3-NOP dose, and overall mean; and (3) one selected model from all combinations of up to 5 covariates, which were compared using a leave-one-out cross validation method. Models including only 3-NOP dose resulted in a significant reduction of 32.7%, 30.9%, and 32.6% for CH4 production (g/d), yield (g/kg dry matter intake), and intensity (g/kg energy-corrected milk), respectively, at an average 3-NOP dose of 70.5 mg/kg dry matter (DM). The greater the NDF content in the diet, the lower the reduction efficiency for a given 3-NOP dose. For 10 g/kg DM increase in NDF content from its mean (329 g of NDF/kg of DM) the 3-NOP effect on CH4 production was impaired by 0.633%, the 3-NOP effect on CH4 yield by 0.647%, and the 3-NOP effect on CH4 intensity by 0.723%. The analysis based on leave-one-out cross validation showed an increase in NDF and crude fat content reduces efficacy of 3-NOP and an increase in 3-NOP dose increases efficacy. A 1% (10 g/kg) DM decrease in dietary NDF content from its mean may increase the efficacy of 3-NOP in reducing CH4 production by 0.915%. A 1% (10 g/kg DM) decrease in dietary crude fat content from its mean enhances the efficacy of 3-NOP on CH4 production by 3.080% at a given dose and NDF level. For CH4 yield, next to 3-NOP dose, dietary NDF content and dietary crude fat content were included in the selected model, but also dietary starch content with an opposite direction to NDF and crude fat. The effect of 3-NOP dose on CH4 intensity was similar to its effect on CH4 production, whereas the effect of dietary NDF content was slightly lower. Expanding the previously published models with the newly available data published from trials since then improved model performance, hence demonstrating the value of regularly updating meta-analyses if a wider range of data becomes available.
- Published
- 2023
3. Effect of solid feed level and types of roughage on passage kinetics of milk replacer, concentrate, and roughage in veal calves
- Author
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Jennifer L. Ellis, A.J.W. Mens, Christopher D. Powell, Gisabeth Binnendijk, Sanne van Gastelen, and Walter J. J. Gerrits
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Dietary Fiber ,Animal Nutrition ,Kinetics ,roughage type ,Excretion ,03 medical and health sciences ,Rumen ,Animal science ,Genetics ,medicine ,Ingestion ,Animals ,Dry matter ,030304 developmental biology ,Breath test ,0303 health sciences ,Silage ,calf ,medicine.diagnostic_test ,Chemistry ,0402 animal and dairy science ,food and beverages ,04 agricultural and veterinary sciences ,Straw ,040201 dairy & animal science ,Animal Feed ,Diervoeding ,solid feed level ,Diet ,Milk ,Hay ,WIAS ,Animal Science and Zoology ,Cattle ,passage kinetics ,Food Science - Abstract
This study aimed (1) to provide estimates of total mean retention times of milk replacer (MR), concentrates, and roughage in veal calves fed a mixed diet; (2) to determine the effect of level and type of solid feed (SF) on passage kinetics of MR, concentrates, and roughages in veal calves; and (3) to compare passage kinetics in veal calves using the fecal excretion curves of indigestible markers and a noninvasive 13C tracer breath test approach to determine whether the latter technique can serve as an alternative. At the start of the trial, 48 Holstein-Friesian calves (6 wk of age; 68 ± 7.7 kg of body weight; BW) were assigned to 1 of 4 dietary treatments (for statistical analysis, only 39 calf observations were used). Three treatments contained chopped wheat straw as roughage in the SF mixture in a concentrate:roughage ratio of 90:10 (dry matter basis). The SF level was 20 g/kg of metabolic BW per day (low straw), 30 g/kg of metabolic BW per day (middle straw), or 40 g/kg of metabolic BW per day (high straw). The fourth treatment (high hay) contained long perennial ryegrass hay as roughage in the SF mixture in a concentrate:roughage ratio of 70:30 (dry matter basis, at 40 g/kg of metabolic BW per day). The quantity of MR was fixed for the high straw treatment, whereas the amount of MR for the other treatments during the adaptation period was adjusted based on a pair gain strategy (i.e., exchanging ration components but keeping similar net energy). At the end of the adaptation period, calves ranged from 12 to 15 wk of age with an average BW of 123 ± 8.6 kg. Passage kinetics of concentrates were estimated by measuring 13C enrichment excess of CO2 in breath from a pulsed-dose of [1-13C]octanoate. Passage kinetics of roughage, concentrates, and MR were also estimated using fecal excretion curves obtained after ingestion of chromium-mordanted roughage, Yb2O3, and Co-EDTA, respectively. We conclude that [1-13C]octanoate cannot serve as a measure for oro-duodenal transit of concentrates because of unrealistic estimates. Based on the fecal excretion curves, we concluded that the total mean retention time of MR (i.e., time to peak; the moment that the excretion curve reaches peak concentration) was, on average, 12.4 h, and that the passage kinetics of MR was not affected by the level or type of SF. The mean retention time of concentrates was shorter (21.4 h) than that of both straw (59.1 h) and hay (36.8 h), and was not affected by the level or type of SF. Also, the mean retention time of the slowest compartment (i.e., the rumen) was shorter for concentrates (39.6 h) than that of straw (110.0 h) and hay (59.2 h). Contrary, the passage of roughage was affected by level and type of SF. Long hay increased time to peak by 22.3 h and decreased ruminal mean retention time by 50.8 h relative to chopped straw, indicating that the passage rate of long hay is faster than that of chopped straw. We conclude that the level and type of SF only affects the passage kinetics of roughage and not that of MR and concentrates.
- Published
- 2021
- Full Text
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4. Methane mitigation potential of 3-nitrooxypropanol in lactating cows is influenced by basal diet composition
- Author
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Sanne van Gastelen, Jan Dijkstra, Jeroen M.L. Heck, Maik Kindermann, Arie Klop, Rudi de Mol, Dennis Rijnders, Nicola Walker, and André Bannink
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feed additive ,Silage ,methanogen inhibitor ,Animal Nutrition ,Propanols ,dairy cattle ,Poaceae ,Zea mays ,Diervoeding ,Diet ,silage-based diet ,Pregnancy ,Genetics ,WIAS ,Animals ,Lactation ,Cattle ,Female ,Animal Science and Zoology ,Methane ,Food Science - Abstract
The objective of this study was to investigate whether the CH4 mitigation potential of 3-nitrooxypropanol (3-NOP) in dairy cattle was affected by basal diet (BD) composition. The experiment involved 64 Holstein-Friesian dairy cows (146 ± 45 d in milk at the start of trial; mean ± SD) in 2 overlapping crossover trials, each consisting of 2 measurement periods. Cows were blocked according to parity, d in milk, and milk yield, and randomly allocated to 1 of 3 diets: a grass silage-based diet (GS) consisting of 30% concentrates and 70% grass silage (DM basis), a grass silage- and corn silage-mixed diet (GSCS) consisting of 30% concentrates, 42% grass silage, and 28% corn silage (DM basis), or a corn silage-based diet (CS) consisting of 30% concentrates, 14% grass silage, and 56% corn silage (DM basis). Two types of concentrates were formulated, viz. a concentrate for the GS diet and a concentrate for the CS diet, to meet the energy and protein requirements for maintenance and milk production. The concentrate for the GSCS diet consisted of a 50:50 mixture of both concentrates. Subsequently, the cows within each type of BD received 2 treatments in a crossover design: either 60 mg of 3-NOP/kg of DM (NOP60) and a placebo with 0 mg of 3-NOP/kg of DM (NOP0) in one crossover or 80 mg of 3-NOP/kg of DM (NOP80) and NOP0 in the other crossover. Diets were provided as total mixed ration in feed bins, which automatically recorded feed intake. Additional concentrate was fed in the GreenFeed system that was used to measure emissions of CH4 and H2. The CS diets resulted in a reduced CH4 yield (g/kg DMI) and CH4 intensity (g/kg milk). Feeding 3-NOP resulted in a decreased DMI. Milk production and composition did not differ between NOP60 and NOP0, whereas milk yield and the yield of major components decreased for NOP80 compared with NOP0. Feed efficiency was not affected by feeding 3-NOP. Interactions between BD and supplementation of 3-NOP were observed for the production (g/d) and yield (g/kg DMI) of both CH4 and H2, indicating that the mitigating effect of 3-NOP depended on the composition of the BD. Emissions of CH4 decreased upon 3-NOP supplementation for all BD, but the decrease in CH4 emissions was smaller for GS (−26.2% for NOP60 and −28.4% for NOP80 in CH4 yield) compared with both GSCS (−35.1% for NOP60 and −37.9% for NOP80 for CH4 yield) and CS (−34.8% for NOP60 and −41.6% for NOP80 for CH4 yield), with no difference between the latter 2 BD. Emissions of H2 increased upon 3-NOP supplementation for all BD, but the H2 yield (g/kg DMI) increased 3.16 and 3.30-fold, respectively, when NOP60 and NOP80 were supplemented to GS, and 4.70 and 4.96 fold, respectively, when NOP60 and NOP80 were supplemented to CS. In conclusion, 3-NOP can effectively decrease CH4 emissions in dairy cows across diets, but the level of CH4 mitigation is greater when supplemented in a corn silage-based diet compared with a grass silage-based diet.
- Published
- 2022
5. Abomasal infusion of ground corn and ammonium chloride in early-lactating Holstein-Friesian dairy cows to induce hindgut and metabolic acidosis
- Author
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Sanne van Gastelen, André Bannink, Kelly K. Nichols, and Jan Dijkstra
- Subjects
metabolic acidosis ,Rumen ,Animal Nutrition ,Silage ,hindgut acidosis ,Cattle Diseases ,Total mixed ration ,Zea mays ,Ammonium Chloride ,03 medical and health sciences ,Animal science ,Latin square ,Genetics ,medicine ,Animals ,Lactation ,Dry matter ,030304 developmental biology ,Acidosis ,0303 health sciences ,Chemistry ,dairy cow ,0402 animal and dairy science ,food and beverages ,Metabolic acidosis ,04 agricultural and veterinary sciences ,medicine.disease ,040201 dairy & animal science ,Diervoeding ,Diet ,Fermentation ,WIAS ,Animal Science and Zoology ,Hindgut fermentation ,Cattle ,Digestion ,Female ,medicine.symptom ,early lactation ,Food Science - Abstract
Next to rumen acidosis, other forms of acidosis may also affect lactational performance of cows. Therefore, the effects of hindgut acidosis, induced via abomasal infusion of ground corn, and metabolic acidosis, induced via abomasal infusion of NH4Cl, were studied in cows in early lactation. Observations were made on intake and digestibility of nutrients, lactation performance, energy and N partitioning, blood acid-base status, and rumen and hindgut fermentation characteristics. In a 6 × 6 Latin square design, 6 rumen-fistulated, second-lactation Holstein-Friesian dairy cows (48 ± 17 d in milk) were subjected to 5 d of continuous abomasal infusions of water as control, or solutions of 2.5 mol of NH4Cl/d, 5.0 mol of NH4Cl/d, 3.0 kg of ground corn/d, or the combination of ground corn with either of the 2 NH4Cl levels, followed by 2 d of rest. Treatment solutions were administered via peristaltic pumps through infusion lines attached to the rumen cannula plug and an abomasal infusion line with a flexible disk (equipped with holes to allow digesta passage) to secure its placement through the sulcus omasi. A total mixed ration consisting of 70% grass silage and 30% concentrate (on dry matter basis) was fed at 95% of ad libitum intake of individual cows. The experiment was conducted in climate respiration chambers to determine feed intake, lactation performance, and energy and N balance. Abomasal infusion of NH4Cl affected the acid-base status of the cows, but more strongly when in combination with abomasal infusion of ground corn. Metabolic acidosis (defined as a blood pH < 7.40, blood HCO3 concentration < 25.0 mmol/L, and a negative base excess) was observed with 5.0 mol of NH4Cl/d, 3.0 kg of ground corn/d + 2.5 mol of NH4Cl/d, and 3.0 kg of ground corn/d + 5.0 mol of NH4Cl/d. Metabolic acidosis was associated with decreased milk lactose content, metabolic body weight, energy retained as protein, and fecal N excretion, and increased urine N excretion, and tended to decrease intake of nutrients. Digestibility of several nutrients increased with 5.0 mol of NH4Cl/d, likely as a result of decreased intake. Abomasal ground corn infusion resulted in hindgut acidosis, where fecal pH decreased from 6.86 without ground corn to 6.00 with ground corn, regardless of NH4Cl level. The decrease in fecal pH was likely the result of increased hindgut fermentation, evidenced by increased fecal volatile fatty acid concentrations. Hindgut acidosis was associated with decreased digestibility of nutrients, except for starch, which increased, and crude fat, which was not affected. No systemic inflammatory response was observed, suggesting that the hindgut epithelium was not severely affected by the more acidic conditions or barrier damage. Abomasal infusion of ground corn increased milk yield, milk protein and lactose yield, fecal N excretion, N use efficiency, and total energy retained as well as energy retained in fat, and reduced milk fat content and urine N excretion.
- Published
- 2021
6. 3-Nitrooxypropanol decreases methane emissions and increases hydrogen emissions of early lactation dairy cows, with associated changes in nutrient digestibility and energy metabolism
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Sanne van Gastelen, J.M.L. Heck, Gisabeth Binnendijk, Maik Kindermann, Jan Dijkstra, André Bannink, Stephane Duval, and T. Zandstra
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Dietary Fiber ,Animal Nutrition ,Silage ,Propanols ,3-nitrooxypropanol ,Ice calving ,Biology ,Poaceae ,Feed conversion ratio ,Zea mays ,Random Allocation ,Animal science ,Nutrient ,Pregnancy ,enteric methane production ,Lactation ,Genetics ,medicine ,Animals ,Organic matter ,Dry matter ,chemistry.chemical_classification ,dairy cow ,Nutrients ,Diervoeding ,lactation stage ,Diet ,Neutral Detergent Fiber ,medicine.anatomical_structure ,Milk ,chemistry ,WIAS ,Animal Science and Zoology ,Cattle ,Digestion ,Female ,Energy Intake ,Energy Metabolism ,Methane ,Food Science ,Hydrogen - Abstract
The aim of this study was to determine the methane (CH4) mitigation potential of 3-nitrooxypropanol and the persistency of its effect when fed to dairy cows in early lactation. Sixteen Holstein-Friesian cows (all multiparous; 11 cows in their second parity and 5 cows in their third parity) were blocked in pairs, based on actual calving date, parity, and previous lactation milk yield, and randomly allocated to 1 of 2 dietary treatments: a diet including 51 mg of 3-nitrooxypropanol/kg of dry matter (3-NOP) and a diet including a placebo at the same concentration (CON). Cows were fed a 35% grass silage, 25% corn silage, and 40% concentrate (on dry matter basis) diet from 3 d after calving up to 115 d in milk (DIM). Every 4 weeks, the cows were housed in climate respiration chambers for 5 d to measure lactation performance, feed and nutrient intake, apparent total-tract digestibility of nutrients, energy and N metabolism, and gaseous exchange (4 chamber visits per cow in total, representing 27, 55, 83, and 111 DIM). Feeding 3-NOP did not affect dry matter intake (DMI), milk yield, milk component yield, or feed efficiency. These variables were affected by stage of lactation, following the expected pattern of advanced lactation. Feeding 3-NOP did not affect CH4 production (g/d) at 27 and 83 DIM, but decreased CH4 production at 55 and 111 DIM by an average of 18.5%. This response in CH4 production is most likely due to the differences observed in feed intake across the different stages of lactation because CH4 yield (g/kg of DMI) was lower (on average 16%) at each stage of lactation upon feeding 3-NOP. On average, feeding 3-NOP increased H2 production and intensity 12-fold; with the control diet, H2 yield did not differ between the different stages of lactation, whereas with the 3-NOP treatment H2 yield decreased from 0.429 g/kg of DMI at 27 DIM to 0.387 g/kg of DMI at 111 DIM. The apparent total-tract digestibility of dry matter, organic matter, neutral detergent fiber, and gross energy was greater for the 3-NOP treatment. In comparison to the control treatment, 3-NOP did not affect energy and N balance, except for a greater metabolizable energy intake to gross energy intake ratio (65.4 and 63.7%, respectively) and a greater body weight gain (average 0.90 and 0.01% body weight change, respectively). In conclusion, feeding 3-NOP is an effective strategy to decrease CH4 emissions (while increasing H2 emission) in early lactation Holstein-Friesian cows with positive effects on apparent total-tract digestibility of nutrients.
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- 2019
7. Prediction of methane emission from lactating dairy cows using milk fatty acids and mid-infrared spectroscopy
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Sanne van Gastelen and Jan Dijkstra
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0301 basic medicine ,Nutrition and Dietetics ,Chemistry ,0402 animal and dairy science ,Analytical chemistry ,04 agricultural and veterinary sciences ,040201 dairy & animal science ,Mid infrared spectroscopy ,Methane ,03 medical and health sciences ,Rumen ,chemistry.chemical_compound ,030104 developmental biology ,Nutrient ,Greenhouse gas ,Gas chromatography ,Food science ,Spectroscopy ,Agronomy and Crop Science ,Dairy cattle ,Food Science ,Biotechnology - Abstract
Enteric methane (CH4 ) production is among the main targets of greenhouse gas mitigation practices for the dairy industry. A simple, robust and inexpensive measurement technique applicable on a large scale to estimate CH4 emission from dairy cattle would therefore be valuable. Milk fatty acids (MFA) are related to CH4 production because of the common biochemical pathway between CH4 and fatty acids in the rumen. A summary of studies that investigated the predictive power of MFA composition for CH4 emission indicated good potential, with predictive power ranging between 47% and 95%. Until recently, gas chromatography (GC) was the principal method used to determine the MFA profile, but GC is unsuitable for routine analysis. This has led to the application of mid-infrared (MIR) spectroscopy. The major advantages of using MIR spectroscopy to predict CH4 emission include its simplicity and potential practical application at large scale. Disadvantages include the inability to predict important MFA for CH4 prediction, and the moderate predictive power for CH4 emission. It may not be sufficient to predict CH4 emission based on MIR alone. Integration with other factors, like feed intake, nutrient composition of the feed, parity, and lactation stage may improve the prediction of CH4 emission using MIR spectra. © 2016 Society of Chemical Industry.
- Published
- 2016
- Full Text
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8. Are dietary strategies to mitigate enteric methane emission equally effective across dairy cattle, beef cattle, and sheep?
- Author
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Sanne van Gastelen, Jan Dijkstra, and André Bannink
- Subjects
Male ,Rumen ,Rumination, Digestive ,dietary strategy ,Animal Nutrition ,Silage ,Forage ,ruminant ,Beef cattle ,Biology ,Poaceae ,Zea mays ,Enteric methane ,03 medical and health sciences ,Animal science ,Ruminant ,Genetics ,Animals ,Dairy cattle ,030304 developmental biology ,in vivo measurement ,0303 health sciences ,Sheep ,methane ,0402 animal and dairy science ,04 agricultural and veterinary sciences ,biology.organism_classification ,Diervoeding ,040201 dairy & animal science ,Diet ,Fermentation ,WIAS ,Cattle ,Female ,Animal Science and Zoology ,Digestion ,Food Science - Abstract
The digestive physiology of ruminants is sufficiently different (e.g., with respect to mean retention time of digesta, digestibility of the feed offered, digestion, and fermentation characteristics)that caution is needed before extrapolating results from one type of ruminant to another. The objectives of the present study were (1)to provide an overview of some essential differences in rumen physiology between dairy cattle, beef cattle, and sheep that are related to methane (CH 4 )emission; and (2)to evaluate whether dietary strategies to mitigate CH 4 emission with various modes of action are equally effective in dairy cattle, beef cattle, and sheep. A literature search was performed using Web of Science and Scopus, and 94 studies were selected from the literature. Per study, the effect size of the dietary strategies was expressed as a proportion (%)of the control level of CH 4 emission, as this enabled a comparison across ruminant types. Evaluation of the literature indicated that the effectiveness of forage-related CH 4 mitigation strategies, including feeding more highly digestible grass (herbage or silage)or replacing different forage types with corn silage, differs across ruminant types. These strategies are most effective for dairy cattle, are effective for beef cattle to a certain extent, but seem to have minor or no effects in sheep. In general, the effectiveness of other dietary mitigation strategies, including increased concentrate feeding and feed additives (e.g., nitrate), appeared to be similar for dairy cattle, beef cattle, and sheep. We concluded that if the mode of action of a dietary CH 4 mitigation strategy is related to ruminant-specific factors, such as feed intake or rumen physiology, the effectiveness of the strategy differs across ruminant types, whereas if the mode of action is associated with methanogenesis-related fermentation pathways, the strategy is effective across ruminant types. Hence, caution is needed when translating effectiveness of dietary CH 4 mitigation strategies across different ruminant types or production systems.
- Published
- 2019
9. The effect of DNA extraction methods on observed microbial communities from fibrous and liquid rumen fractions of dairy cows
- Author
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Jueeli D. Vaidya, Bartholomeus van den Bogert, Joan E. Edwards, Jos Boekhorst, Sanne van Gastelen, Edoardo Saccenti, Caroline M. Plugge, and Hauke Smidt
- Subjects
0301 basic medicine ,Microbiology (medical) ,Lysis ,Animal Nutrition ,Silage ,Microorganism ,lcsh:QR1-502 ,Microbiology ,lcsh:Microbiology ,Rumen fluid ,03 medical and health sciences ,Rumen ,Microbiologie ,Fibrous content ,Systems and Synthetic Biology ,Food science ,Original Research ,VLAG ,Systeem en Synthetische Biologie ,WIMEK ,biology ,Bacteria ,Chemistry ,Extraction (chemistry) ,Fungi ,biology.organism_classification ,DNA extraction ,Archaea ,Diervoeding ,QPCR ,030104 developmental biology ,Pyrosequencing ,454 pyrosequencing ,DNA extraction methods - Abstract
DNA based methods have been widely used to study the complexity of the rumen microbiota, and it is well known that the method of DNA extraction is a critical step in enabling accurate assessment of this complexity. Rumen fluid (RF) and fibrous content (FC) fractions differ substantially in terms of their physical nature and associated microorganisms. The aim of this study was therefore to assess the effect of four DNA extraction methods (RBB, PBB, FDSS, PQIAmini) differing in cell lysis and/or DNA recovery methods on the observed microbial diversity in RF and FC fractions using samples from four rumen cannulated dairy cows fed 100% grass silage (GS100), 67% GS and 33% maize silage (GS67MS33), 33% GS and 67% MS (GS33MS67), or 100% MS (MS100). An ANOVA statistical test was applied on DNA quality and yield measurements, and it was found that the DNA yield was significantly affected by extraction method (p < 0.001) and fraction (p < 0.001). The 260/280 ratio was not affected by extraction (p = 0.08) but was affected by fraction (p = 0.03). On the other hand, the 260/230 ratio was affected by extraction method (p < 0.001) but not affected by fraction (p = 0.8). However, all four extraction procedures yielded DNA suitable for further analysis of bacterial, archaeal and anaerobic fungal communities using quantitative PCR and pyrosequencing of relevant taxonomic markers. Redundancy analysis (RDA) of bacterial 16S rRNA gene sequence data at the family level showed that there was a significant effect of rumen fraction (p = 0.012), and that PBB (p = 0.012) and FDSS (p = 0.024) also significantly contributed to explaining the observed variation in bacterial community composition. Whilst the DNA extraction method affected the apparent bacterial community composition, no single extraction method could be concluded to be ineffective. No obvious effect of DNA extraction method on the anaerobic fungi or archaea was observed, although fraction effects were evident for both. In summary, the comprehensive assessment of observed communities of bacteria, archaea and anaerobic fungi described here provides insight into a rational basis for selecting an optimal methodology to obtain a representative picture of the rumen microbiota.
- Published
- 2018
- Full Text
- View/download PDF
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