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Water limitation is one of the most important factors limiting crop productivity world-wide and has likely been an important selective regime influencing the evolution of plant physiology. Understanding the genetic and physiological basis of drought adaptation is therefore important for improving crops as well as for understanding the evolution of wild species. Here, results are presented from quantitative trait loci (QTL) mapping of flowering time (a drought escape mechanism) and carbon stable isotope ratio (¿13C) (a drought-avoidance mechanism) in Arabidopsis thaliana. Whole-genome scans were performed using multiple-QTL models for both additive and epistatic QTL effects. We mapped five QTL affecting flowering time and five QTL affecting ¿13C, but two genomic regions contained QTL with effects on both traits, suggesting a potential pleiotropic relationship. In addition, we observed QTL¿QTL interaction for both traits. Two ¿13C QTL were captured in near-isogenic lines to further characterize their physiological basis. These experiments revealed allelic effects on ¿13C through the upstream trait of stomatal conductance with subsequent consequences for whole plant transpiration efficiency and water loss. Our findings document considerable natural genetic variation in whole-plant, drought resistance physiology of Arabidopsis and highlight the value of quantitative genetic approaches for exploring functional relationships regulating physiology.

Terrestrial plant photosynthesis may be limited both by stomatal behavior and leaf biochemical capacity. While inferences have been made about the importance of stomatal and biochemical limitations to photosynthesis in a variety of species in a range of environments, genetic variation in these limitations has never been documented in wild plant populations. Genetic variation provides the raw material for adaptive evolution in rates of carbon assimilation. We examined genetic variation in gas exchange physiology and in stomatal and biochemical traits in 16 genetic lines of the annual plant, Polygonum arenastrum. The photosynthesis against leaf internal CO2 (A−ci) response curve was measured on three greenhouse-grown individuals per line. We measured the photosynthetic rate (A) and stomatal conductance (g), and calculated the internal CO2 concentration (ci) at ambient CO2 levels. In addition, the following stomatal and biochemical characteristics were obtained from the A−ci curve on each individual: the degree of stomatal limitation to photosynthesis (Ls), the maximum ribulose 1,5-biphosphate carboxylase-oxygenase (Rubisco) activity (Vcmax) and electron transport capacity (Jmax). All physiological traits were genetically variable, with broad sense heritabilities ranging from 0.66 for Ls to 0.94 for Jmax. Strong positive genetic correlations were found between Vcmax and Jmax, and between g and biochemical capacity. Path analyses revealed strong causal influences of stomatal conductance and leaf biochemistry on A and ci. Path analysis also indicated that Ls confounds both stomatal and biochemical effects, and is an appropriate measure of stomatal influences on photosynthesis, only when biochemical variation is accounted for. In total, our results indicate that differences among lines in photosynthesis and ci result from simultaneous changes in biochemical and stomatal characteristics and are consistent with theoretical predictions that there should be co-limitation of photosynthesis by ribulose-1,5-biphosphate (RuBP) utilization and regeneration, and by stomatal conductance and leaf biochemistry. Gas exchange characteristics of genetic lines in the present study were generally consistent with measurements of the same lines in a previous field study. Our new results indicate that the mechanisms underlying variation in gas exchange include variation in both stomatal conductance and biochemical capacity. In addition, A, g, and ci in the present study tended also to be positively correlated with carbon isotope discrimination (Δ), and negatively correlated with time to flowering, life span, and leaf size based on earlier work. The pattern of correlation between physiology and life span among genetic lines of P. arenastrum parallels interspecific patterns of character correlations. We suggest that the range of trait constellations among lines in P. arenastrum represents a continuum between stress avoidance (rapid development, high gas exchange metabolism) and stress tolerance (slow development, low gas exchange metabolism), and that genetic variation in these character combinations may be maintained by environmental variation in stress levels in the species’ ruderal habitat.

We present evidence of genetic variation in and covariation between leaf-level gas exchange properties and leaf size among family lines of Polygonum arenastrum. This self-fertilizing annual had previously been shown to vary genetically in developmental phenology and in morphology (size of leaves, internodes, flowers and seeds) (Geber 1990). Significant family differences were found in photosynthetic carbon assimilation rate (A), lcaf conductance to water vapor (g), instantaneous water-use efficiency (WUE), and leaf carbon isotope discrimination (Δ). A strong positive genetic correlation between A and g suggested that there was stomatal limitation on A. In addition, higher g led to relatively greater increases in transpiration, E, than in assimilation, A, so that families with high rates of gas exchange had lower instantaneous WUE and/or higher carbon isotope discrimination values. Leaf size and gas exchange were genetically correlated. In earlier studies leaf size was found to be genetically correlated with developmental phenology (Geber 1990). The pattern that emerges is one in which small-leaved families (which also have small internodes, flowers, and seeds) tend to have high gas exchange rates, low WUE, rapid development to flowering and high early fecundity, but reduced life span and maximum (vegetative and reproductive) yield compared to large-leaved families. We suggest that this pattern may have arisen from selection for contrasting suites of characters adapted to environments differing in season length.

Growth and reproduction in higher plants depend on meristems, which have three developmental fates. A meristem can become reproductive, but doing so terminates its activity, it can differentiate vegetatively, or it can remain quiescent for extended periods. The first two fates are mutually exclusive, and only the second leads to the production of additional meristems for subsequent growth and reproduction. In Polygonum arenastrum (frequently referred to as P. aviculare in North American Floras), an annual species lacking quiescent meristems, a quantitative genetic analysis of inbred full-sibling families revealed genetic variation in the developmental pattern of axillary meristem commitment to vegetative growth versus reproduction. Developmental variation resulted in family differences in the age of first reproduction, in age-specific fecundity and growth, and in final plant size and reproductive output. Furthermore, there were strong negative genetic correlations between age-specific growth and fecundity. Early commitment of meristems to reproduction favors high early fecundity, but reduces the number of meristems available for vegetative differentiation, and leads to lowered growth rates and fecundity later in life, when meristems are limiting. Conversely, meristem commitment to vegetative growth early in life results in low early fecundity but high late fecundity and growth. Meristem limitation, like resource limitation, is a proximate mechanism that generates trade-offs between life history traits. Differences between meristem limitation and resource limitation are discussed. Meristem limitation leads automatically to a senescent life history because of the determinate fate of reproductive meristems. Developmental characters were also found to be genetically correlated with metamer characters (leaf size, internode length) and seed size in this selfing species. The pattern of correlation is suggestive of selection for particular suites of life history and morphological characters.

Plant water-use efficiency (WUE) is expected to affect plant fitness and thus be under natural selection in arid habitats. Although many natural population studies have assessed plant WUE, only a few related WUE to fitness. The further determination of whether selection on WUE is direct or indirect through functionally related traits has yielded no consistent results. For natural populations of two desert annual sunflowers, Helianthus anomalus and H. deserticola, we used phenotypic selection analysis with vegetative biomass as the proxy for fitness to test (1) whether there was direct and indirect selection on WUE (carbon isotope ratio) and related traits (leaf N, area, succulence) and (2) whether direct selection was consistent with hypothesized drought/dehydration escape and avoidance strategies. There was direct selection for lower WUE in mesic and dry H. anomalus populations, consistent with dehydration escape, even though it is the longer lived of the two species. For mesic H. anomalus, direct selection favored lower WUE and higher N, suggesting that plants may be "wasting water" to increase N delivery via the transpiration stream. For the shorter lived H. deserticola in the direr habitat, there was indirect selection for lower WUE, inconsistent with drought escape. There was also direct selection for higher leaf N, succulence and leaf size. There was no direct selection for higher WUE consistent with dehydration avoidance in either species. Thus, in these natural populations of two desert dune species higher fitness was associated with some combination direct and indirect selection for lower WUE, higher leaf N and larger leaf size. Our understanding of the adaptive value of plant ecophysiological traits will benefit from further consideration of related traits such as leaf nitrogen and more tests in natural populations.

We examined patterns of genetic variance and covariance in two traits (i) carbon stable isotope ratio delta13C (dehydration avoidance) and (ii) time to flowering (drought escape), both of which are putative adaptations to local water availability. Greenhouse screening of 39 genotypes of Arabidopsis thaliana native to habitats spanning a wide range of climatic conditions, revealed a highly significant positive genetic correlation between delta13C and flowering time. Studies in a range of C3 annuals have also reported large positive correlations, suggesting the presence of a genetically based trade-off between mechanisms of dehydration avoidance (delta13C) and drought escape (early flowering). We examined the contribution of pleiotropy by using a combination of mutant and near-isogenic lines to test for positive mutational covariance between delta13C and flowering time. Ecophysiological mutants generally showed variation in delta13C but not flowering time. However, flowering time mutants generally demonstrated pleiotropic effects consistent with natural variation. Mutations that caused later flowering also typically resulted in less negative delta13C and thus probably higher water use efficiency. We found strong evidence for pleiotropy using near-isogenic lines of Frigida and Flowering locus C, cloned loci known to be responsible for natural variation in flowering time. These data suggest the correlated evolution of delta13C and flowering time is explained in part by the fixation of pleiotropic alleles that alter both delta13C and time to flowering.