1. Identification of new fusion genes and their clinical significance in endometrial cancer
- Author
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Tian Yao, Jin-Jin Liu, Li-Jun Zhao, Jing-Yi Zhou, Jia-Qi Wang, Yue Wang, Zhi-Qi Wang, Li-Hui Wei, Jian-Liu Wang, Xiao-Ping Li, and Yi Cui
- Subjects
Sequence analysis ,lcsh:Medicine ,Biology ,Fusion genes ,Bioinformatics ,medicine.disease_cause ,Genome ,Fusion gene ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Endometrial cancer ,Pregnancy ,medicine ,Humans ,Clinical significance ,RNA, Messenger ,Gene ,Chi-Square Distribution ,Sequence Analysis, RNA ,lcsh:R ,Cancer ,General Medicine ,Original Articles ,medicine.disease ,Prognosis ,Endometrial Neoplasms ,Neoplasm Proteins ,Nuclear Receptor Interacting Protein 1 ,Gene Expression Regulation, Neoplastic ,030220 oncology & carcinogenesis ,Drug resistance ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Female ,RNA, Long Noncoding ,Protein Tyrosine Phosphatases ,Carcinogenesis ,030217 neurology & neurosurgery ,Software - Abstract
Supplemental Digital Content is available in the text, Background: Fusion genes may play an important role in tumorigenesis, prognosis, and drug resistance; however, studies on fusion genes in endometrial cancer (EC) are rare. This study aimed to identify new fusion genes and to explore their clinical significance in EC. Methods: A total of 28 patients diagnosed with EC were enrolled in this study. RNA sequencing was used to obtain entire genomes and transcriptomes. STAR-comparison and STAR-fusion prediction were applied to predict the fusion genes. Chi-square tests and Student t tests were used to verify the clinical significance with SPSS 13.0 software. Results: New fusion genes were found, and the number of fusion genes varied from 3 to 110 among all patients with EC. The type of fusion genes varied and included messenger RNA (mRNA)-mRNA, long non-coding RNA (lncRNA)-lncRNA, and lncRNA-mRNA. There were six fusion genes with high fusion rates, namely, RP11–123O10.4–GRIP1, RP11–444D3.1–SOX5, RP11–680G10.1–GSE1, NRIP1–AF127936.7, RP11–96H19.1–RP11–446N19.1, and DPH7–PTP4A3. Further studies showed that these fusion genes are related to stage, grade, and recurrence, in which NRIP1–AF127936.7 and DPH7–PTP4A3 were found only in stage III patients with EC. DPH7–PTP4A3 was found in grades 2 and 3, and recurrent patients with EC. Conclusion: Fusion genes play an essential role in EC. Six genes that are overexpressed with high fusion rates are identified. NRIP1–AF127936.7 and DPH7–PTP4A3 might be related to stage, and DPH7–PTP4A3 be related to grade and recurrence.
- Published
- 2019
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