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Anthropogenically-induced global warming is expected to decrease primary productivity in the subtropical oceans by strengthening stratification of the water column and reducing the flux of nutrients from deep-waters to the sunlit surface layers. Identification of such changes is hindered by a paucity of long-term, spatially-resolved, biological time-series data at the basin scale. This paper exploits Atlantic Meridional Transect (AMT) data on physical and biogeochemical properties (1995–2014) in synergy with a wide range of remote-sensing (RS) observations from ocean colour, Sea Surface Temperature (SST), Sea Surface Salinity (SSS) and altimetry (surface currents), combined with different modelling approaches (both empirical and a coupled 1-D Ecosystem model), to produce a synthesis of the seasonal functioning of the North and South Atlantic Sub-Tropical Gyres (STGs), and assess their response to longer-term changes in climate. We explore definitive characteristics of the STGs using data of physical (SST, SSS and peripheral current systems) and biogeochemical variables (chlorophyll and nitrate), with inherent criteria (permanent thermal stratification and oligotrophy), and define the gyre boundary from a sharp gradient in these physical and biogeochemical properties. From RS data, the seasonal cycles for the period 1998–2012 show significant relationships between physical properties (SST and PAR) and gyre area. In contrast to expectations, the surface layer chlorophyll concentration from RS data (CHL) shows an upward trend for the mean values in both subtropical gyres. Furthermore, trends in physical properties (SST, PAR, gyre area) differ between the North and South STGs, suggesting the processes responsible for an upward trend in CHL may vary between gyres. There are significant anomalies in CHL and SST that are associated with El Nino events. These conclusions are drawn cautiously considering the short length of the time-series (1998–2012), emphasising the need to sustain spatially-extensive surveys such as AMT and integrate such observations with models, autonomous observations and RS data, to help address fundamental questions about how our planet is responding to climate change. A small number of dedicated AMT cruises in the keystone months of January and July would complement our understanding of seasonal cycles in the STGs.

The phytoplankton pigment composition (chlorophylls and carotenoids) from 17 Atlantic Meridional Transect (AMT) cruises over the period 1995–2005 was analysed to determine the distributions of pigments and plankton in the Atlantic Ocean between 50°N and 50°S. Data were quality assured by statistical methods, including regression of total chlorophyll a (TChla) versus accessory pigments (AP) and comparison of the AMT-TChla with contemporary SeaWiFS-TChla (cruises AMT-05 to -17). Comparisons of province-mean TChla (±SD) for in situ and satellite data showed good agreement for each cruise. ‘Taxa-specific’ pigments were used to define phytoplankton functional types (PFTs) for each of the biogeochemical provinces along the AMT. Pigment ratios (e.g. TChla/AP) were analysed for each cruise and for each province as indices (characteristic properties) of particular PFTs. Mostly robust positive correlations were observed between TChla and pigment ratios for different PFTs, for some provinces and most cruises. These were consistent with previous observations. Generally there were no significant trends of mean TChla or pigment ratios within provinces over the period 1995–2005, although the previously reported perturbation due to the 1997–1998 ENSO was evident.

We have developed a model linking phytoplankton absorption to phytoplankton size classes (PSCs) that uses a single variable, the optical absorption by phytoplankton at 443 nm, a ph (443), which can be derived from the inversion of ocean colour data. The model is based on the observation that the absolute value of a ph (443) co-varies with the spectral slope of phytoplankton absorption in the range of 443–510 nm, which is also a characteristic of phytoplankton size classes. The model when used for analysis of SeaWiFS global data, showed that picoplankton dominated ~ 79.1% of surface waters, nanoplankton ~ 18.5% and microplankton the remainder (2.3%). The N. and S. Atlantic and the N. and S. Pacific Oceans showed seasonal cycles with both micro and nanoplankton increasing in spring and summer in each hemisphere, while picoplankton, dominant in the oligotrophic gyres, decreased in the summer. The PSCs derived from SeaWiFS data were verified by comparing contemporary 8-day composites with PSCs derived from in situ pigment data from quasiconcurrent Atlantic Meridional Transect cruises.

Photosynthetic electron transport directly generates the energy required for carbon fixation and thus underlies the aerobic metabolism of aquatic systems. We determined photosynthetic electron turnover rates, ETRs, from ca. 100 FRR fluorescence water-column profiles throughout the subtropical and tropical Atlantic during six Atlantic Meridional Transect cruises (AMT 6, May–June 1998, to AMT 11, September–October 2000). Each FRR fluorescence profile yielded a water-column ETR-light response from which the maximum electron turnover rate ( ETR RCII max ) , effective absorption (σPSII) and light saturation parameter (Ek) specific to the concentration of photosystem II reaction centres (RCIIs) were calculated. ETR RCII max and Ek increased whilst σPSII decreased with mixed-layer depth and the daily integrated photosynthetically active photon flux when all provinces were considered together. These trends suggested that variability in maximum ETR can be partly attributed to changes in effective absorption. Independent bio-optical measurements taken during AMT 11 demonstrated that σPSII variability reflects taxonomic and physiological differences in the phytoplankton communities. ETR RCII max and Ek, but not σPSII, remained correlated with mixed-layer depth and daily integrated photosynthetically active photon flux when data from each oceanic province were considered separately, indicating a decoupling of electron turnover and carbon fixation rates within each province. Comparison of maximum ETRs with 14C-based measurements of Pmax further suggests that light absorption and C fixation are coupled to differing extents for the various oligotrophic Atlantic provinces. We explore the importance of quantifying RCII concentration for determination of ETRs and interpretation of ETR-C fixation coupling.

The successful exploitation of remotely sensed observations of water colour in the coastal zone requires atmospheric correction methods that can determine water reflectance from top-of-atmosphere radiometric measurements over waters containing significant non-phytoplanktonic particulate material. These so-called Case II waters often have significant water leaving radiance at near infra-red (NIR) wavelengths which invalidates conventional “dark pixel” atmospheric correction procedures, including those using the Siegel-type NIR iterative-correction scheme. A coupled ocean-atmosphere model is described that solves for water-leaving radiance and atmospheric path radiance over Case II turbid waters from measurements by the NASA ocean colour satellite sensor, SeaWiFS. The theoretical basis of this model is described, together with its implementation within the SeaWiFS data processing system, SeaDAS. The resulting products are validated using five test images of European waters, where the modified atmospheric correction leads to significant increases in normalised water leaving-radiances across the whole spectrum and to fewer negative water leaving radiances.

Reduced sulfur gases and optical properties were measured in the upper ocean during an Atlantic Meridional Transect cruise of the RRS James Clark Ross from England to the Falkland Islands in 1998. Sea surface concentrations of carbonyl sulfide (COS) exhibited a pronounced diel variation at low latitudes but no diel cycle at mid and high latitudes possibly because of oceanic fronts and the longer hydrolysis time constant in cold water. The highest COS concentrations were observed in coastal and upwelling areas. CS2 concentrations varied less than those of COS, and the highest concentrations were found in the North African upwelling area with decreasing concentrations both northward and southward of this maximum. Dimethylsulfide (DMS) had the largest concentrations in the upper ocean, but methyl mercaptan (CH3SH) was an important reduced sulfur species in some coastal and upwelling areas. This may be associated with high bacterial growth rates. Colored dissolved organic matter (CDOM) fluorescence and absorbance also exhibit the highest values in coastal and upwelling areas and the lowest values in the southern subtropical gyre. The results suggest that carbon disulfide (CS2) outgassed from the oceans and oxidized in the atmosphere may represent a larger source of COS to the atmosphere than the direct flux of COS across the sea-air interface.

Coincident pigment and underwater radiometric data were collected during a cruise along the 20°W meridian from 60°N to 37°N in the north-eastern Atlantic Ocean as part of the Natural Environment Research Council (NERC) thematic programme: plankton reactivity in the marine environment (PRIME). These data were used to simulate the retrieval of two bio-optical variables from remotelysensed measurements of ocean colour (for example by the NASA Sea-viewing wide field-of-view sensor, SeaWiFS), using two-band semi-empirical algorithms. The variables considered were the diffuse attenuation coefficient at 490 nm, ( K d (490), units: m −1 ) and the phytoplankton pigment concentration expressed as optically-weighted chlorophyll- a concentration [ C a , units: mg m −3 ]. There was good agreement between the measured and the retrieved bio-optical values. Algorithms based on the PRIME data were generated to compare the performance of local algorithms (algorithms which apply to a restricted area and/or season) with global algorithms (algorithms developed on data from a wide variety of water masses). The use of local algorithms improved the average accuracy, but not the precision, of the retrievals: errors were still ±36% ( K d ) and ±117% ( C a ) using local algorithms.

The use of CZCS-type band-ratio algorithms to estimate the diffuse attenuation coefficient, percentage light depths, and near-surface optically weighted phytoplankton pigment concentrations from remotely sensed ocean colour data was investigated on two cruises in the Arabian Sea and Gulf of Oman during autumn and winter 1994. The variations of upwelling radiance and downwelling irradiance with depth were measured along with phytoplankton pigment concentrations by HPLC. A spectroradiometer was used on the second cruise to investigate the feasibility of measuring water-leaving radiance from above the sea surface. Retrieval of the diffuse downwelling attenuation coefficient at 490 nm was accurate to within 22% of the actual value across both cruises. There was also a robust relationship between the diffuse attenuation coefficient and the 10, 1 and 0.1% light depths. Above-surface estimates of water-leaving radiance agreed with SeaWiFS-standard estimates to within 10% between 443 and 555 nm. The global 443 : 555 band-ratio algorithms of Aiken et al. [NASA Tech. Memo 104566, Vol. 29, SeaWiFS Technical Report Series, 34 pp] estimated near-surface chlorophyll-a and fluorometric pigment concentrations with mean absolute errors of less than 35% of the actual values (which were all less than 2.0 mg m-3). The performance of algorithms based on the 490 : 555 ratio was poorer. The estimates given by the algorithms were generally higher than the measured pigment concentrations and the variance of the accuracy of the estimates was high. There appears to be no significant change in the performance of the algorithms between cruises (approximately 2 1 2 months apart in time). There is no evidence that the Gulf of Oman should be treated as a separate bio-optical province to the Arabian Sea/Omani shelf area for the purpose of the retrieval of near-surface pigment concentrations from ocean colour observations.

Atmospheric and oceanic partial pressures of CO2 (pCO2) have been recorded automatically along two Atlantic meridional transects in 1995. The tropical Atlantic ocean (20°S–20°N) is generally a source of CO2 for the atmosphere, but in the region of the North Equatorial Countercurrent an undersaturation of CO2 has been observed. Undersaturations previously reported in the literature are explained by the decrease of salinity due to the high precipitations associated with the Intertropical Convergence Zone. In June 1995, strong CO2 undersaturations (ΔpCO2 = −70μatm) were observed near 8°N, which suggests, in addition of the salinity effect, an uptake of CO2 due to biological activity. This undersaturation, although weaker than in spring, also appeared at other periods of the year 1995.

2004 ENVISAT Symposium, Salzburg, AUSTRIA, SEP, 2004; We measured water leaving reflectance, phytoplankton pigments, optical properties and photosynthetic parameters in the southern Benguela ecosystem in October 2002. These data were used to validate MERIS standard products: reflectance (MERIS wavelengths) and Case 1 Chlorophyll- a. In this heterogeneous area, accurate validation required sampling within a few minutes of the satellite overpass. Inter-pigment relationships e. g. Total Chlorophyll (TChla) to Total Pigment (TP) were robust (R-2 similar to 0.99) yet pigment ratios (TChla/TP) were not constant (range 0.44 to 0.62) increasing log-linearly with biomass (R-2 similar to 0.7). Photosynthetic parameters (e. g. Photosynthetic Quantum Efficiency, PQE) and optical ratios (a(676)/a(440)) also increased log-linearly with biomass (R-2 similar to 0.8). PQE, pigment and optical ratios were linearly inter-correlated (R-2 similar to 0.7 to 0.8). From these data we derived the bio-optical traits for several phytoplankton functional types (PFTs): micro-plankton (diatoms and dinoflagellates) had high biomass, pigment ratios and PQE; nano-flagellates had low to intermediate biomass, pigment ratios and PQE; prokaryotes had very low biomass, pigment ratios and PQE. We present MERIS data analysed for PFTs and new products (PQE).

[1] Atmospheric and oceanic partial pressures of carbon dioxide and fluorescence were measured underway off the coast of northern Chile in January 1997. Seawater samples were taken for the analysis of nutrient and chlorophyll concentrations at 31 stations. The objectives were to improve the understanding of the biologically induced responses of upwelling processes off the coast of Chile and to assess the air-sea exchange of CO2 during the austral summer. The cruise sampled within a grid from 22°40S to 24°S extending offshore to 71°52′W during 10–16 January 1997 (survey 1) and 22–27 January 1997 (survey 2). Survey 1 measurements showed relatively uniform hydrographic and chemical properties, except south of the Mejillones peninsula, where colder and fresher water was observed. During the second survey, concurrent satellite imagery showed colder water in a narrow coastal band. The relatively cold and fresh water recorded there suggested that upwelled water originated mainly from subantarctic water rather than from the nutrient-rich equatorial subsurface water. Onshore-offshore variability dominated over longshore variability. The offshore subtropical water was characterized by a temperature of 23°C, a salinity of 34.9, and relatively uniform pCO2 around 400 μatm that was mainly temperature driven. Although strong CO2 drawdowns (pCO2 as low as 200 μatm) were located close to the coast following the upwelling events, overall, the region was a source of CO2 to the atmosphere. A pCO2 algorithm was constructed using the cruise data of sea surface temperature (SST) and salinity (S). Synthetic salinity was calculated from S-SST relationships determined for survey 2 and used with advanced very high resolution radiometer SST to calculate pCO2 over the cruise area, weekly, from January to March. European Centre for Medium-Range Weather Forecasts wind speeds were used to calculate the CO2 flux in the upwelling off Chile (22°S–29°S, 68°W–73°W). The region was a source of CO2 flux of 1.6 mmol m−2 d−1 from 1 January to 25 March 1997.

Geo-engineering proposals to mitigate global warming have focused either on methods of carbon dioxide removal, particularly nutrient fertilization of plant growth, or on cooling the Earth's surface by reducing incoming solar radiation (shading). Marine phytoplankton contribute half the Earth's biological carbon fixation and carbon export in the ocean is modulated by the actions of microbes and grazing communities in recycling nutrients. Both nutrients and light are essential for photosynthesis, so understanding the relative influence of both these geo-engineering approaches on ocean ecosystem production and processes is critical to the evaluation of their effectiveness. In this paper, we investigate the relationship between light and nutrient availability on productivity in a stratified, oligotrophic subtropical ocean ecosystem using a one-dimensional water column model coupled to a multi-plankton ecosystem model, with the goal of elucidating potential impacts of these geo-engineering approaches on ecosystem production. We find that solar shading approaches can redistribute productivity in the water column but do not change total production. Macronutrient enrichment is able to enhance the export of carbon, although heterotrophic recycling reduces the efficiency of carbon export substantially over time. Our results highlight the requirement for a fuller consideration of marine ecosystem interactions and feedbacks, beyond simply the stimulation of surface blooms, in the evaluation of putative geo-engineering approaches.

The remote sensing of turbid waters (Case II) using the Medium Resolution Imaging Spectrometer (MERIS) requires new approaches for atmospheric correction of the data. Unlike the open ocean (Case I waters) there are no wavelengths where the water-leaving radiance is zero. A coupled hydrological atmospheric model is described here. The model solves the water-leaving radiance and atmospheric path radiance in the near-infrared (NIR) over Case II turbid waters. The theoretical basis of this model is described, together with its place in the proposed MERIS processing architecture. Flagging procedures are presented that allow seamless correction of both Case I waters, using conventional models, and Case II waters using the proposed model. Preliminary validation of the model over turbid waters in the Humber estuary, UK is presented using Compact Airborne Spectrographic Imager (CASI) imagery to simulate the MERIS satellite sensor. The results presented show that the atmospheric correction scheme has superior perfo...