Search

Aim: We used two fungal data sources for occurrence records (fruitbodies and roots) to (1) test the influence of data source on estimating the environmental niche of ectomycorrhizal (ECM) fungi and (2) compare the differences in estimated niche area and density for ECM fungal species with conspicuous (easily observed, i.e. mushrooms) versus inconspicuous (difficult to observe and/or usually overlooked, i.e. crusts and truffles) fruitbodies. Location: Europe. Taxon: Sixty‐six ectomycorrhizal fungi. Methods: We used fungal records obtained from fruitbody and root data of 66 common ECM fungal species in European forests to estimate their environmental niches. The fruitbody data were extracted from public databases (GBIF, UNITE), while the root data (from individual ectomycorrhizas) were obtained from a dataset of 136 ICP Forests long‐term intensive monitoring plots. We estimated the niches for combined data sources (fruitbody and root data) and for each individual data source using six key environmental variables for ECM fungal community composition. We then examined how estimated niche overlap and area (number of cells in niche grid) varied for the two data sources between conspicuous and inconspicuous species. Results: We found that although the niches estimated using combined data from the two data sources had high overlap with the niches estimated from fruitbody data, the niches estimated from fruitbody data had low or medium overlap with the niches estimated using root data for most ECM fungi. The overlap between the two data sources for conspicuous species was significantly larger than that for inconspicuous species. Root data were important for estimating the niche of inconspicuous species, which had a high ratio of root data to fruitbody data. Main Conclusion: Our results indicate that although fruitbody data suffice for estimating the environmental niche for most conspicuous ECM fungi, combined datasets including fruitbody and root data can improve the accuracy of estimated niches and should be used. Root data for inconspicuous species are particularly useful, and thus, adopting root data in niche estimation will better infer the niches of ECM fungi. Inferring niches along environmental variables can guide future sampling and conservation of fungi. [ABSTRACT FROM AUTHOR]

Aim: In continuous environments, niche limits of species often determine their distribution limits. However, when these limits spatially coincide with a perceived dispersal barrier, the determinants of species' ranges may be confounded. We investigate the distribution pattern of the Brown Hornbill (Aves: Bucerotidae), which spans significant riverine barriers, but stops south of the Brahmaputra River. Considering its preference for low‐elevation evergreen forests, we posit that the lack of sufficient habitats north of the Brahmaputra prevents dispersal of the Brown Hornbill, and not the river itself. Location: The Brahmaputra valley and the Indo‐Burma hotspot. Taxa: Anorrhinus austeni, Aceros nipalensis. Methods: We analysed citizen‐science occurrence data on hornbill presence against a suite of climatic, canopy‐specific and topographical predictors to model the environmental niche of the Brown Hornbill. We used presence‐only maximum entropy modelling in an information theoretic framework, in conjunction with constructing binary logistic regression models using presence and pseudoabsence data. We compared niche models of the Brown Hornbill and the Rufous‐necked hornbill, a close relative with a similar distribution, but which has spanned the Brahmaputra River. Results: Despite the presence of suitable wet‐evergreen forests north of the Brahmaputra River, the hilly terrains in the region act as a biogeographic barrier for the Brown Hornbill, which prefers lowland evergreen forests. Further, highly suitable regions for the Brown and the Rufous‐necked Hornbills precisely delineate low and high‐elevation evergreen forests respectively, indicating that these birds are separated along an elevational axis. Main Conclusions: The Brahmaputra River lies at the cusp of two subtly different environmental regimes. It may therefore serve as the niche limit for certain organisms and not as a physical obstacle to their dispersal. Our study implicitly predicts how widespread deforestation prevalent in the lowland evergreen forests of this region adversely impacts the distributions of organisms that depend on them, such as the Brown Hornbill. Further, our study proffers an approach to ascertain determinants of species distributions in a hypothesis testing framework. [ABSTRACT FROM AUTHOR]

Rocio is a small genus of Neotropical freshwater fishes that is distributed in Atlantic drainages of northern Middle America. Two species of Rocio, R. spinosissima and R. octofasciata, exhibit sympatry in the Río Dulce basin in eastern Guatemala. Rocio spinosissima is endemic to the Río Dulce basin, while R. octofasciata has a larger geographic range that includes this area. Our goal was to explore the ecological and morphological variation shown by these two closely related species and determine their differences. A combination of field work, analysis of museum specimens, and ecological niche modelling helped to better understand the differences in habitat and environmental characteristics, along with the body shape variation. Local‐scale environmental data suggest that both species inhabit lentic environments, with R. spinosissima using narrower and low canopy‐covered habitats and R. octofasciata inhabiting areas with a larger range of environmental characteristics. Ecological Niche Models indicated that land cover, soil, precipitation, and temperature largely define the distribution of both species. Body shape differs between species, with R. spinosissima exhibiting a rounder and deeper body while R. octofasciata is more elongated. Specimens of R. octofasciata across its distribution also show variation in head shape, mouth position, fin, and caudal peduncle characteristics, possibly as a response to trophic strategies that reduce competition. Similarities in their environments and morphologies allow us to identify broadly overlapping niches in the two species of Rocio, while the fine scale differences documented between species will have conservation implications for the endemic R. spinosissima. [ABSTRACT FROM AUTHOR]

Aim: The abundance and distribution of multiple species are interconnected through various mechanisms (e.g. biotic interactions or common responses to the environment) shaping communities. Joint species distribution models (jSDM) have been introduced as a potential tool to integrate these mechanisms when modelling multiple species distributions, by inferring a residual matrix of species associations that could inform on biotic interactions. However, the direct link between these residual associations and biotic interactions has been challenged. Here, we test how the data type, resolution and sampling size affect the species associations identified by jSDMs and their benefits for predicting species given the known state of others (i.e. conditional prediction). Location: France. Taxon: Birds. Method: Utilizing standardized co‐abundances of 40 common bird species, across 7040 monitoring sites, and eight environmental variables at high resolution (200 m), we compared jSDM residual associations across data types (abundance vs. occurrence), resolution and sampling size. Additionally, we investigated correlations between residual associations and species functional similarities (eight traits). We then assessed to what extent residual associations contain valuable information for conditional predictions. Results: Our results show that species associations identified by jSDM are greatly influenced by data resolution and sampling size rather than data types (abundance vs. occurrence). We find positive correlations between species associations and functional similarity that challenges the inference of negative biotic interactions expected from niche partitioning. However, retrieving these high‐resolution residual species associations for conditional predictions enhanced predictive quality for all species (+235% on average), potentially synthesizing missing variables difficult to capture in the field. Main Conclusions: We highlight that species associations identified by jSDM using fine‐resolution co‐abundance datasets do not retrieve biotic interactions expected from niche partitioning (i.e. positive correlation with functional similarity) but probably missing environmental variables. Nonetheless, these residual associations contain valuable information to enhance predictive performance through currently underutilized conditional predictions. [ABSTRACT FROM AUTHOR]

Aim: Spatial models are valuable for revealing biodiversity patterns but are less commonly applied to soil microbes than to aboveground macroorganisms. Ectomycorrhizal (EM) fungi are symbiotic microbes with high taxonomic and functional diversity that are associated with forest trees. We aimed to predict regional‐scale spatial patterns of EM fungal richness and community composition. Location: Forests and subalpine ecosystems in Japan, from Hokkaido to Okinawa. Taxon: EM fungi (Asco‐ and Basidiomycetes). Methods: We used EM fungal DNA sequence data from 1507 soil cores at 39 sites covering a wide range of environmental conditions. The random forest machine learning approach was applied to determine the relative importance of environmental variables (i.e. climate, soil and ecosystem productivity) and to make spatial predictions. The spatial patterns of EM fungal richness and community composition were mapped at 1‐km2 grid resolution. Results: Temperature generally had a strong influence on EM fungal richness and community composition dissimilarity. Our regional spatial analysis revealed that (1) EM fungal richness was higher in northeastern and montane regions than in southwestern regions and low‐elevation plains, (2) different EM fungal lineages exhibited contrasting spatial diversity patterns and (3) community composition dissimilarity shifted sharply from high to low elevations, and gradually from northeastern to southwestern regions, mainly in relation to climate gradients. Areas with low applicability for spatial modelling were identified based on multidimensional environmental spaces, which will help to prioritize data collection for future research. Main Conclusions: Our study provides a baseline of the potential spatial patterns of EM fungal communities, which were explained primarily by climate variables and secondarily by soil factors and ecosystem productivity. The predicted spatial patterns may be valuable for identifying diversity hotspots and advancing the assessment of climate change impacts on ecologically important root‐associated fungi. [ABSTRACT FROM AUTHOR]

Microorganisms present biogeographical distribution patterns and defined environmental niches. Community complexity and methodological limitations have hindered investigations of the environmental niches of microorganisms and the associated ecological applications. As a step forward, multi-omics can now help define the metabolic niches of microorganisms. The proposed metabolic niche framework opens new ways to investigate metabolic plasticity, assess niche shifts, differentiate specialist from generalist phylotypes, evaluate the impacts of microbial invasions, and contribute to culturing efforts. The environmental niche concept describes the distribution of a taxon in the environment and can be used to understand community dynamics, biological invasions, and the impact of environmental changes. The uses and applications are still restricted in microbial ecology, largely due to the complexity of microbial systems and associated methodological limitations. The development of shotgun metagenomics and metatranscriptomics opens new ways to investigate the microbial niche by focusing on the metabolic niche within the environmental space. Here, we propose the metabolic niche framework, which, by defining the fundamental and realised metabolic niche of microorganisms, has the potential to not only provide novel insights into habitat preferences and the metabolism associated, but also to inform on metabolic plasticity, niche shifts, and microbial invasions. [ABSTRACT FROM AUTHOR]

Aim: Species depend upon a constrained set of environmental conditions, or environmental niches, for survival and reproduction that are being increasingly perturbed or lost under rapid climatic change. Seasonal environments, which require species to withstand shifting conditions or track their niches via movement, can offer an important system to study the range of biological responses to potentially cope with climate change. Here, we develop a novel methodological framework to identify niche‐tracking strategies, including the tracking of niche position and breadth, using a uniquely well‐sampled system of 619 New World bird species. Location: Western Hemisphere. Time period: 1980–2020. Major taxa studied: Birds (Aves). Methods: At continental scales, we identify the tracking of both environmental niche position and breadth and assess its phylogenetic and functional underpinning. Partitioning niche position and breadth tracking can inform whether climatic means or extremes constrain seasonal niches. Results: We uncover four primary niche‐tracking strategies, including the tracking of environmental niche position, niche breadth, both or neither. Species that track niche position most often also track niche breadth, but nearly 40% only track one component and 26% only track niche breadth and not position. There is only limited phylogenetic determinism to this variation, but a strong association with ecological and functional attributes that differs between niche position versus niche breadth tracking. Main conclusions: The observed diversity in type and strength of environmental niche‐tracking strategies points to highly differing sensitivity to ongoing climatic change, with narrow trackers of both position and breadth particularly susceptible. The trait associations of niche tracking imply significant functional consequences for communities and ecosystems as impending climate change affects some strategies more strongly than others. Seasonal environments and their diversity of niche‐tracking strategies offer exceptionally dynamic systems for understanding the biological responses and consequences of climate change. [ABSTRACT FROM AUTHOR]

Changing precipitation and temperature patterns due to climate change, shift ecological niches which pose a challenge for species. Furthermore, it is still unclear that if climate change faster than the speed of the species to move to more suitable environments. Climate Envelope models (GEMs) are used extensively in this matter to predict species geographical distribution. In this study, climate data and animal movement strategies integrated into the environmental niche model to analyze the successes of the species that have different movement strategies under the changing climate conditions. Four different movement strategies are formulized; lazy knowledge strategy (LKS), lazy no knowledge strategy (LNKS), proactive knowledge (PKS) and proactive no knowledge strategy (PNKS). In this study, mean annual temperature and annual precipitation data gathered for the RCP8.5 scenario from the HadGEM2-ES GCM model at a 10-minute resolution. Results show that the PKS has the highest survival rates which makes it the most successful strategy. Furthermore, the species with knowledge had performed higher survival rates than the species without knowledge due to their skill to find the most suitable cells around them. One-Way Anova test confirmed that there are significant differences between the strategies. Moreover, the analysis suggests that the species with knowledge of their environment have the most successful strategies for facing the climate change. [ABSTRACT FROM AUTHOR]

Under the changing climate, the persistence of Afrotemperate taxa may be threatened as suitable habitat availability decreases. The unique disjunct ranges of podocarps in southern Africa raise questions about the persistence of these species under climate change. Here, we identified likely environmental drivers of these distributions, characterized the current and future (2070) environmental niches, and projected distributions of four podocarp species in South Africa. Species distribution models were conducted using species locality data for Afrocarpus falcatus , Podocarpus latifolius , Pseudotropheus elongatus and Podocarpus henkelii and both historical climate data (1970–2000) and future climate scenarios (Representative Concentration Pathway [RCP] 4.5 and 8.5, 2061–2080) to estimate the current and future distributions. We also used this opportunity to identify the most important climatic variables that likely govern each species' distribution. Using niche overlap estimates, a similarity test, and indices of niche expansion, stability and unfilling, we explored how niches change under different climate scenarios. The distribution of the study species was governed by the maximum temperature of the warmest month, temperature annual range, mean temperature of the wettest quarter, and precipitation of the wettest, driest and warmest quarters. The current distribution of A. falcatus was predicted to expand to higher elevations under RCP 4.5 and RCP 8.5. Podocarpus henkelii was predicted to lose most of its suitable habitat under RCP 4.5 and expand under RCP 8.5; however, this was the opposite for P. elongatus and P. latifolius. Interestingly, P. elongatus, which had the smallest geographic distribution, showed the most vulnerability to climate change in comparison to the other podocarps. Mapping the distribution of podocarps and understanding the differences in their current and future climate niches provide insight into potential climate drivers of podocarp persistence and the potential for adaptation of these species. Overall, these results suggest that P. elongatus and P. henkelii may expand to novel environmental niches. [ABSTRACT FROM AUTHOR]

Global change is expected to have complex effects on the distribution and transmission patterns of zoonotic parasites. Modelling habitat suitability for parasites with complex life cycles is essential to further our understanding of how disease systems respond to environmental changes, and to make spatial predictions of their future distributions. However, the limited availability of high quality occurrence data with high spatial resolution often constrains these investigations. Using 449 reliable occurrence records for Echinococcus multilocularis from across Europe published over the last 35 years, we modelled habitat suitability for this parasite, the aetiological agent of alveolar echinococcosis, in order to describe its environmental niche, predict its current and future distribution under three global change scenarios, and quantify the probability of occurrence for each European country. Using a machine learning approach, we developed large‐scale (25 × 25 km) species distribution models based on seven sets of predictors, each set representing a distinct biological hypothesis supported by current knowledge of the autecology of the parasite. The best‐supported hypothesis included climatic, orographic and land‐use/land‐cover variables such as the temperature of the coldest quarter, forest cover, urban cover and the precipitation seasonality. Future projections suggested the appearance of highly suitable areas for E. multilocularis towards northern latitudes and in the whole Alpine region under all scenarios, while decreases in habitat suitability were predicted for central Europe. Our spatially explicit predictions of habitat suitability shed light on the complex responses of parasites to ongoing global changes. [ABSTRACT FROM AUTHOR]

Aim of study: Detecting possible small-scale soil effects on height growth of single trees in monospecific stands of three important tree species (Abies alba, Fagus sylvatica, and Picea abies). Area of study: 37 mature stands along an ecological gradient in Southern Germany from the cold and wet “optimal niche zone” to warmer and drier niche zones, including gravelly soils with poor water supply. Material and methods: Measurement of achieved height and age of 15 to 20 sample trees per stand. Estimation of the available water capacity of the soil (AWC) in close proximity to sample trees based on soil texture following the German soil survey guidelines. Examining height growth depending on niche zone and AWC. Main results: On sites (stand level) with the lowest water regime, height growth increased significantly with AWC of microsites. The estimated effect on height growth over the whole range of AWC values was almost 8 m at those sites. In contrast, the effect was negative on optimal sites. For intermediate and marginal sites, the effect was positive, albeit not significant for marginal sites. Research highlights: To our knowledge this is the first study about small-scale effects of AWC on height growth of single trees in temperate European forests. Small-scale soil variability should be considered in future scientific studies and practical evaluation, involving single tree performance at stands with low water regime. This seems particularly important in genetic environmental associations studies and in the process of selecting trees for breeding purposes in such stands.

The North American-Caribbean genera Pholcophora Banks, 1896 and Tolteca Huber, 2000 are representatives of Ninetinae, a group of small, cryptic, and thus poorly known pholcid spiders. We present the first comprehensive revisions of the two genera, including extensive SEM data and descriptions of seven new species from Mexico (Pholcophora mazatlan Huber sp. nov., P. papanoa Huber sp. nov., P. tehuacan Huber sp. nov., Tolteca huahua Huber sp. nov., T. manzanillo Huber sp. nov., T. oaxaca Huber sp. nov., and T. sinnombre Huber sp. nov.). We add new CO1 sequences of nine species to previously published molecular data and use these for a preliminary analysis of relationships. We recover a North American-Caribbean clade including ‘true’ (mainland) Pholcophora, Tolteca (Mexico), and a Caribbean clade consisting of the genus Papiamenta Huber, 2000 (Curaçao) and Caribbean ‘Pholcophora’. First karyotype data for Tolteca (2n♂ = 13, X1X2Y and 15, X1X2Y, respectively) reveal a strong reduction of the number of chromosome pairs within the North American-Caribbean clade, and considerable karyotype differentiation among congeners. This agrees with considerable CO1 divergence among species of Tolteca but contrasts with very inconspicuous morphological divergence. Environmental niche analyses show that the widespread P. americana Banks, 1896 (western USA, SW Canada) occupies a very different niche than its Mexican congeners and other close relatives. Caribbean taxa also have a low niche overlap with ‘true’ Pholcophora and Tolteca, supporting the idea that Caribbean ‘Pholcophora’ are taxonomically misplaced.

The genus Leptospermum (Myrtaceae) is widespread in Australia and contains several species that are of increasing interest to produce bioactive honey. Here, we used the Maxent algorithm to investigate bioclimatic, climatic, and soil variables as predictors for potential distributions of seven Leptospermum species that have been identified as useful for bioactive honey production in Australia (L. lanigerum, L. liversidgei, L. nitens, L. polygalifolium, L. scoparium, L. speciosum, and L. whitei). Bioclimatic and climatic variables, mainly those related to moist conditions, were the best predictors for the distribution of the species. Leptospermum lanigerum and L. scoparium were suitable species in areas in southwestern Australia and Tasmania, while L. polygalifolium was suitable for eastern Australia. For L. nitens, appropriate areas were found only in western and southern regions, whereas only border ranges in Queensland and New South Wales were considered suitable for L. liversidgei, L. speciosum, and L. whitei. Notably, the latter areas were identified as a potential 'hotspot' for Leptospermum species. Our study can assist the incipient Leptospermum honey industry in Australia in identifying suitable local species and the local maintenance requirements for the species chosen. [ABSTRACT FROM AUTHOR]

Background: The Iberian Peninsula comprises one of the largest boundaries between Mediterranean and Eurosiberian vegetation, known as sub-Mediterranean zone. This ecotone hosts many unique plant species and communities and constitutes the low-latitude (warm) margin of numerous central European species which co-occur with Mediterranean vegetation. Two of the main species found in this region are the Eurosiberian European beech (Fagus sylvatica L.) and the Mediterranean Pyrenean oak (Quercus pyrenaica Willd.). It remains unclear how the different physiological and adaptive strategies of these two species reflect their niche partitioning within a sub-Mediterranean community and to what extent phenotypic variation (intraspecific variability) is driving niche partitioning across Eurosiberian and Mediterranean species. Methods: We quantified functional niche partitioning, based on the n-dimensional hypervolume to nine traits related to resource acquisition strategies (leaf, stem and root) plus relative growth rate as an additional wholeplant trait, and the environmental niche similarity between Pyrenean oak and European beech. Further, we analyzed the degree of phenotypic variation of both target species and its relationship with relative growth rates (RGR) and environmental conditions. Plant recruitment was measured for both target species as a proxy for the average fitness. Results: Species' functional space was highly segregated (13.09% overlap), mainly due to differences in niche breadth (59.7%) rather than niche replacement (25.6%), and beech showed higher trait variability, i.e., had larger functional space. However, both species shared the environmental space, i.e., environmental niches were overlapped. Most plant traits were not related to abiotic variables or RGR, neither did RGR to plant traits. Conclusions: Both target species share similar environmental space, however, show notably different functional resource-use strategies, promoting a high complementarity that contributes to maintaining a high functionality in sub-Mediterranean ecosystems. Therefore, we propose that conservation efforts be oriented to preserve both species in these habitats to maximize ecosystem functionality and resilience. [ABSTRACT FROM AUTHOR]

Background: The Iberian Peninsula comprises one of the largest boundaries between Mediterranean and Eurosiberian vegetation, known as sub-Mediterranean zone. This ecotone hosts many unique plant species and communities and constitutes the low-latitude (warm) margin of numerous central European species which co-occur with Mediterranean vegetation. Two of the main species found in this region are the Eurosiberian European beech (Fagus sylvatica L.) and the Mediterranean Pyrenean oak (Quercus pyrenaica Willd.). It remains unclear how the different physiological and adaptive strategies of these two species reflect their niche partitioning within a sub-Mediterranean community and to what extent phenotypic variation (intraspecific variability) is driving niche partitioning across Eurosiberian and Mediterranean species. Methods: We quantified functional niche partitioning, based on the n-dimensional hypervolume to nine traits related to resource acquisition strategies (leaf, stem and root) plus relative growth rate as an additional whole-plant trait, and the environmental niche similarity between Pyrenean oak and European beech. Further, we analyzed the degree of phenotypic variation of both target species and its relationship with relative growth rates (RGR) and environmental conditions. Plant recruitment was measured for both target species as a proxy for the average fitness. Results: Species’ functional space was highly segregated (13.09% overlap), mainly due to differences in niche breadth (59.7%) rather than niche replacement (25.6%), and beech showed higher trait variability, i.e., had larger functional space. However, both species shared the environmental space, i.e., environmental niches were overlapped. Most plant traits were not related to abiotic variables or RGR, neither did RGR to plant traits. Conclusions: Both target species share similar environmental space, however, show notably different functional resource-use strategies, promoting a high complementarity that contributes to maintaining a high functionality in sub-Mediterranean ecosystems. Therefore, we propose that conservation efforts be oriented to preserve both species in these habitats to maximize ecosystem functionality and resilience.

Abstract The quantification of Hutchinson's n‐dimensional hypervolume has enabled substantial progress in community ecology, species niche analysis and beyond. However, most existing methods do not support a partitioning of the different components of hypervolume. Such a partitioning is crucial to address the ‘curse of dimensionality’ in hypervolume measures and interpret the metrics on the original niche axes instead of principal components. Here, we propose the use of multivariate normal distributions for the comparison of niche hypervolumes and introduce this as the multivariate‐normal hypervolume (MVNH) framework (R package available on https://github.com/lvmuyang/MVNH). The framework provides parametric measures of the size and dissimilarity of niche hypervolumes, each of which can be partitioned into biologically interpretable components. Specifically, the determinant of the covariance matrix (i.e. the generalized variance) of a MVNH is a measure of total niche size, which can be partitioned into univariate niche variance components and a correlation component (a measure of dimensionality, i.e. the effective number of independent niche axes standardized by the number of dimensions). The Bhattacharyya distance (BD; a function of the geometric mean of two probability distributions) between two MVNHs is a measure of niche dissimilarity. The BD partitions total dissimilarity into the components of Mahalanobis distance (standardized Euclidean distance with correlated variables) between hypervolume centroids and the determinant ratio which measures hypervolume size difference. The Mahalanobis distance and determinant ratio can be further partitioned into univariate divergences and a correlation component. We use empirical examples of community‐ and species‐level analysis to demonstrate the new insights provided by these metrics. We show that the newly proposed framework enables us to quantify the relative contributions of different hypervolume components and to connect these analyses to the ecological drivers of functional diversity and environmental niche variation. Our approach overcomes several operational and computational limitations of popular nonparametric methods and provides a partitioning framework that has wide implications for understanding functional diversity, niche evolution, niche shifts and expansion during biotic invasions, etc.

Individual decisions regarding how, why and when organisms interact with one another and with their environment scale up to shape patterns and processes in communities. Recent evidence has firmly established the prevalence of intraspecific variation in nature and its relevance in community ecology, yet challenges associated with collecting data on large numbers of individual conspecifics and heterospecifics have hampered integration of individual variation into community ecology.Nevertheless, recent technological and statistical advances in GPS‐tracking, remote sensing and behavioural ecology offer a toolbox for integrating intraspecific variation into community processes. More than simply describing where organisms go, movement data provide unique information about interactions and environmental associations from which a true individual‐to‐community framework can be built.By linking the movement paths of both conspecifics and heterospecifics with environmental data, ecologists can now simultaneously quantify intraspecific and interspecific variation regarding the Eltonian (biotic interactions) and Grinnellian (environmental conditions) factors underpinning community assemblage and dynamics, yet substantial logistical and analytical challenges must be addressed for these approaches to realize their full potential.Across communities, empirical integration of Eltonian and Grinnellian factors can support conservation applications and reveal metacommunity dynamics via tracking‐based dispersal data. As the logistical and analytical challenges associated with multi‐species tracking are surmounted, we envision a future where individual movements and their ecological and environmental signatures will bring resolution to many enduring issues in community ecology. [ABSTRACT FROM AUTHOR]

The topographic gradients of the Tropical Andes may have triggered species divergence by different mechanisms. Topography separates species' geographical ranges and offers climatic heterogeneity, which could potentially foster local adaptation to specific climatic conditions and result in narrowly distributed endemic species. Such a pattern is found in the Andean centered palm genus Aiphanes. To test the extent to which geographic barriers and climatic heterogeneity can explain distribution patterns in Aiphanes , we sampled 34 out of 36 currently recognized species in that genus and sequenced them by Sanger sequencing and/or sequence target capture sequencing. We generated Bayesian, likelihood, and species-tree phylogenies, with which we explored climatic trait evolution from current climatic occupation. We also estimated species distribution models to test the relative roles of geographical and climatic divergence in their evolution. We found that Aiphanes originated in the Miocene in Andean environments and possibly in mid-elevation habitats. Diversification is related to the occupation of the adjacent high and low elevation habitats tracking high annual precipitation and low precipitation seasonality (moist habitats). Different species in different clades repeatedly occupy all the different temperatures offered by the elevation gradient from 0 to 3,000 m in different geographically isolated areas. A pattern of conserved adaptation to moist environments is consistent among the clades. Our results stress the evolutionary roles of niche truncation of wide thermal tolerance by physical range fragmentation, coupled with water-related niche conservatism, to colonize the topographic gradient. [ABSTRACT FROM AUTHOR]

The process of phenotypic adaptation to the environments is widely recognized. However, comprehensive studies integrating phylogenetic, phenotypic, and ecological approaches to assess this process are scarce. Our study aims to assess whether local adaptation may explain intraspecific differentiation by quantifying multidimensional differences among populations in closely related lucanid species, Platycerus delicatulus and Platycerus kawadai, which are endemic saproxylic beetles in Japan. First, we determined intraspecific analysis units based on nuclear and mitochondrial gene analyses of Platycerus delicatulus and Platycerus kawadai under sympatric and allopatric conditions. Then, we compared differences in morphology and environmental niche between populations (analysis units) within species. We examined the relationship between morphology and environmental niche via geographic distance. P. kawadai was subdivided into the "No introgression" and "Introgression" populations based on mitochondrial COI gene – nuclear ITS region discordance. P. delicatulus was subdivided into "Allopatric" and "Sympatric" populations. Body length differed significantly among the populations of each species. For P. delicatulus, character displacement was suggested. For P. kawadai, the morphological difference was likely caused by geographic distance or genetic divergence rather than environmental differences. The finding showed that the observed mitochondrial–nuclear discordance is likely due to historical mitochondrial introgression following a range of expansion. Our results show that morphological variation among populations of P. delicatulus and P. kawadai reflects an ecological adaptation process based on interspecific interactions, geographic distance, or genetic divergence. Our results will deepen understanding of ecological specialization processes across the distribution and adaptation of species in natural systems. [ABSTRACT FROM AUTHOR]

The topographic gradients of the Tropical Andes may have triggered species divergence by different mechanisms. Topography separates species’ geographical ranges and offers climatic heterogeneity, which could potentially foster local adaptation to specific climatic conditions and result in narrowly distributed endemic species. Such a pattern is found in the Andean centered palm genus Aiphanes. To test the extent to which geographic barriers and climatic heterogeneity can explain distribution patterns in Aiphanes, we sampled 34 out of 36 currently recognized species in that genus and sequenced them by Sanger sequencing and/or sequence target capture sequencing. We generated Bayesian, likelihood, and species-tree phylogenies, with which we explored climatic trait evolution from current climatic occupation. We also estimated species distribution models to test the relative roles of geographical and climatic divergence in their evolution. We found that Aiphanes originated in the Miocene in Andean environments and possibly in mid-elevation habitats. Diversification is related to the occupation of the adjacent high and low elevation habitats tracking high annual precipitation and low precipitation seasonality (moist habitats). Different species in different clades repeatedly occupy all the different temperatures offered by the elevation gradient from 0 to 3,000 m in different geographically isolated areas. A pattern of conserved adaptation to moist environments is consistent among the clades. Our results stress the evolutionary roles of niche truncation of wide thermal tolerance by physical range fragmentation, coupled with water-related niche conservatism, to colonize the topographic gradient.

Abstract The process of phenotypic adaptation to the environments is widely recognized. However, comprehensive studies integrating phylogenetic, phenotypic, and ecological approaches to assess this process are scarce. Our study aims to assess whether local adaptation may explain intraspecific differentiation by quantifying multidimensional differences among populations in closely related lucanid species, Platycerus delicatulus and Platycerus kawadai, which are endemic saproxylic beetles in Japan. First, we determined intraspecific analysis units based on nuclear and mitochondrial gene analyses of Platycerus delicatulus and Platycerus kawadai under sympatric and allopatric conditions. Then, we compared differences in morphology and environmental niche between populations (analysis units) within species. We examined the relationship between morphology and environmental niche via geographic distance. P. kawadai was subdivided into the “No introgression” and “Introgression” populations based on mitochondrial COI gene – nuclear ITS region discordance. P. delicatulus was subdivided into “Allopatric” and “Sympatric” populations. Body length differed significantly among the populations of each species. For P. delicatulus, character displacement was suggested. For P. kawadai, the morphological difference was likely caused by geographic distance or genetic divergence rather than environmental differences. The finding showed that the observed mitochondrial–nuclear discordance is likely due to historical mitochondrial introgression following a range of expansion. Our results show that morphological variation among populations of P. delicatulus and P. kawadai reflects an ecological adaptation process based on interspecific interactions, geographic distance, or genetic divergence. Our results will deepen understanding of ecological specialization processes across the distribution and adaptation of species in natural systems.

Aim: Invasive species provide an opportunity to study biogeography in action, allowing us to observe how species adapt and fill their environmental niche when introduced to new ecological settings. Here we use sea spurge—a foredune specialist plant species native to Europe which has recently spread across Australia's southern coasts—as a model system to explore species' environmental niches adaptations and potential for future spread following introduction outside their native range. Location: Europe and Australia. Taxon: Sea spurge, Euphorbiaparalias, Euphorbiaceae. Methods: We compiled presence‐absence data of E.paralias from >190,000 vegetation surveys in the native and invaded range. We combined presence‐absence data with information on climate, soil, coastal morphology and human pressure, to test whether E.paralias' environmental niche has shifted following invasion and used species distributions models (SDMs) to map its invasion potential under current and future climatic conditions. Results: The environmental niche of E.paralias has shifted since reaching Australia, expanding into areas further away from people, closer to the shoreline and with higher temperatures. SDMs revealed that alongside broad‐scale gradients in temperature and rainfall, the distribution of E.paralias is also constrained by soil substrate and dune morphology—highlighting the importance of these fine‐scale drivers in shaping invasion dynamics in coastal environments. Moreover, SDMs suggest that future expansion in Australia will result from continued niche filling, not changes in climatic suitability. Main conclusions: Despite its impressive dispersal ability, E.paralias has not yet reached equilibrium in its invaded range and is likely to continue to expand its distribution in Australia regardless of climate change. E.paralias' key to success has been its ability to suit novel environments. We provide one of the first examples of how to leverage distribution data and SDMs to test hypotheses about niche conservatism and expansion in coastal dune invasive plant species. [ABSTRACT FROM AUTHOR]

To forecast climate change impacts across habitats or taxa, thermal vulnerability indices (e.g., safety margins and warming tolerances) are growing in popularity. Here, we present their history, context, formulation, and current applications. We highlight discrepancies in terminology and usage, and we draw attention to key assumptions underpinning the main indices and to their ecological and evolutionary relevance. In the process, we flag biases influencing these indices that are not always evaluated. These biases affect both components of index formulations, namely: (i) the characterisation of the thermal environment; and (ii) an organism's physiological and behavioural responses to more frequent and severe warming. Presently, many outstanding questions weaken a thermal vulnerability index approach. We describe ways to validate vulnerability index applications and outline issues to be considered in further developing these indices. Accurate forecasts of the impacts of climate change are essential for managing biodiversity and minimising further species losses. Indices reflecting forecasts are useful when they are simple enough to be implemented at large scales, but this needs to be balanced against their ability to predict actual impacts. Thermal vulnerability indices such as safety margins and warming tolerance have increased in popularity for making both regional and global predictions of species vulnerability to climate change, but concerns have been raised about their forecasting potential. By estimating the deviation between species' thermal sensitivity and thermal exposure, these indices often do not reflect variation relevant to the organism. They also fall short of considering many intrinsic and extrinsic factors that affect species vulnerability, weakening their usefulness. Under specific circumstances, safety margins can however answer particular questions relating to species' relative sensitivity and exposure, and can be complemented by other approaches, all of which require validation. [ABSTRACT FROM AUTHOR]

The quantification of Hutchinson's n‐dimensional hypervolume has enabled substantial progress in community ecology, species niche analysis and beyond. However, most existing methods do not support a partitioning of the different components of hypervolume. Such a partitioning is crucial to address the 'curse of dimensionality' in hypervolume measures and interpret the metrics on the original niche axes instead of principal components. Here, we propose the use of multivariate normal distributions for the comparison of niche hypervolumes and introduce this as the multivariate‐normal hypervolume (MVNH) framework (R package available on https://github.com/lvmuyang/MVNH).The framework provides parametric measures of the size and dissimilarity of niche hypervolumes, each of which can be partitioned into biologically interpretable components. Specifically, the determinant of the covariance matrix (i.e. the generalized variance) of a MVNH is a measure of total niche size, which can be partitioned into univariate niche variance components and a correlation component (a measure of dimensionality, i.e. the effective number of independent niche axes standardized by the number of dimensions). The Bhattacharyya distance (BD; a function of the geometric mean of two probability distributions) between two MVNHs is a measure of niche dissimilarity. The BD partitions total dissimilarity into the components of Mahalanobis distance (standardized Euclidean distance with correlated variables) between hypervolume centroids and the determinant ratio which measures hypervolume size difference. The Mahalanobis distance and determinant ratio can be further partitioned into univariate divergences and a correlation component.We use empirical examples of community‐ and species‐level analysis to demonstrate the new insights provided by these metrics. We show that the newly proposed framework enables us to quantify the relative contributions of different hypervolume components and to connect these analyses to the ecological drivers of functional diversity and environmental niche variation.Our approach overcomes several operational and computational limitations of popular nonparametric methods and provides a partitioning framework that has wide implications for understanding functional diversity, niche evolution, niche shifts and expansion during biotic invasions, etc. [ABSTRACT FROM AUTHOR]

The urgency of predicting future impacts of environmental change on vulnerable populations is advancing the development of spatially explicit habitat models. Continental-scale climate and microclimate layers are now widely available. However, most terrestrial organisms exist within microclimate spaces that are very small, relative to the spatial resolution of those layers. We examined the effects of multi-resolution, multi-extent topographic and climate inputs on the accuracy of hourly soil temperature predictions for a small island generated at a very high spatial resolution (

Abstract Background Visceral leishmaniasis (VL) is a neglected disease that is spread to humans by the bites of infected female phlebotomine sand flies. Although this vector-borne disease has been eliminated in most parts of China, it still poses a significant public health burden in the Xinjiang Uygur Autonomous Region. Understanding of the spatial epidemiology of the disease remains vague in the local community. In the present study, we investigated the spatiotemporal distribution of VL in the region in order to assess the potential threat of the disease. Methods Based on comprehensive infection records, the spatiotemporal patterns of new cases of VL in the region between 2005 and 2015 were analysed. By combining maps of environmental and socioeconomic correlates, the boosted regression tree (BRT) model was adopted to identify the environmental niche of VL. Results The fitted BRT models were used to map potential infection risk zones of VL in the Xinjiang Uygur Autonomous Region, revealing that the predicted high infection risk zones were mainly concentrated in central and northern Kashgar Prefecture, south of Atushi City bordering Kashgar Prefecture and regions of the northern Bayingolin Mongol Autonomous Prefecture. The final result revealed that approximately 16.64 million people inhabited the predicted potential infection risk areas in the region. Conclusions Our results provide a better understanding of the potential endemic foci of VL in the Xinjiang Uygur Autonomous Region with a 1 km spatial resolution, thereby enhancing our capacity to target the potential risk areas, to develop disease control strategies and to allocate medical supplies.

Abstract In this study, the taxonomic diversity of the Xylodon raduloides species complex (Hymenochaetales, Basidiomycota) is examined. Specimens were studied using an integrative taxonomic approach that includes molecular phylogenetic and morphological analyses, and environmental niche comparisons. Four different species were found inside the Xylodon raduloides complex, with a biogeographic distribution pattern bound by geographic regions: Europe, North America, Patagonia, and Australia–New Zealand. Molecular, morphological, and environmental evidences delimit two lineages within this complex: a Northern Hemisphere clade with longer basidiospores and wider ranges in temperature and precipitation tolerance, and a Southern Hemisphere clade with smaller and more spherical basidiospores, and an isothermal and more humid climate preference. The integrative taxonomic approach used in this study demonstrates congruence between data sets and shows how morphological and environmental characteristics contribute to the differentiation of fungal species complexes. By combining various sources of taxonomic information, three new species are described: Xylodon laurentianus, X. novozelandicus, and X. patagonicus.

Explaining and modeling species communities is more than ever a central goal of ecology. Recently, joint species distribution models (JSDMs), which extend species distribution models (SDMs) by considering correlations among species, have been proposed to improve species community analyses and rare species predictions while potentially inferring species interactions. Here, we illustrate the mathematical links between SDMs and JSDMs and their ecological implications and demonstrate that JSDMs, just like SDMs, cannot separate environmental effects from biotic interactions. We provide a guide to the conditions under which JSDMs are (or are not) preferable to SDMs for species community modeling. More generally, we call for a better uptake and clarification of novel statistical developments in the field of biodiversity modeling. In an era of global changes, developing reliable biodiversity models has become an important research area. Species distribution models are the common tools to understand and predict the distributions of species across space and time. However, they fail to explicitly account for species interactions. To this aim, joint species distribution models were introduced to tease apart the effect of the environment from that of species interactions, to improve rare species modeling, to account for functional traits, and to improve the predictive power of biodiversity models. Nevertheless, most announced advantages have remained unfulfilled, and there is still a need to better integrate the effect of species interactions in the response of species to environmental change. [ABSTRACT FROM AUTHOR]

Aim: Understanding the mechanisms that allow the coexistence of species is key to preserve full ecosystem functioning. In dynamic environments, the study of ecological niches faces the complexity associated to the three dimensionality of the habitat and requires information that reflects such heterogeneity. Within this context, this study intends to identify the segregation mechanisms behind the co‐occurrence of five phylogenetically related pelagic birds by applying a functional perspective based on seabirds' vertical ranges and prey availability features such as depth and body size. Location: Bay of Biscay. Methods: Based on the hypothesis that niche differentiation may occur in any of the three dimensions of the marine environment, we (a) identified the biologically meaningful vertical range affecting seabird species, (b) modelled their environmental and trophic niches, (c) estimated an environmental and trophic overlap index for each pairwise species, and (d) developed a conceptual framework with the most plausible segregation hypotheses. Results: The application of the conceptual framework revealed that in this particular area, pelagic birds coexist through environmental and trophic niche partitioning and potentially through vertical segregation, based on the different biologically meaningful vertical ranges we identified for each species. Indeed, some species responded to prey and oceanographic conditions on the surface (10 m), while others responded to the conditions on deeper waters (above the depth of maximum temperature gradient). These different responses could be interpreted as an additional mechanism to reduce competition, although seabirds diving records would be needed to contrast this hypothesis. Main conclusions: Niche differentiation was found to be primarily driven by trophic and environmental niche partitioning, although species were also influenced by conditions on the vertical dimension. Considering all the dimensions of the niche is essential to fully understand how diving seabirds coexist in dynamic systems and provides insights on species' 3D niches that may help advance into their management. [ABSTRACT FROM AUTHOR]

The establishment success of a population is a function of abiotic and biotic factors and introduction dynamics. Understanding how these factors interact has direct consequences for understanding and managing biological invasions and for applied ecology more generally. Here we use a mesocosm approach to explore how the size of founding populations and the number of introduction events interact with environmental conditions (temperature) to determine the establishment success of laboratory-reared Drosophila melanogaster. We found that temperature played the biggest role in establishment success, eclipsing the role of the other experimental factors when viewed overall. Under optimal temperature conditions propagule pressure was of negligible importance to establishment success. At adverse temperatures, however, establishment success increased with the total founding population size. This effect was considerably stronger at the cold than at the hot extreme. Whether the population was introduced all at once or by increments (changing the number of introduction events) had a negligible global effect. However, once again, a stronger effect of increasing number of introduction events was seen at adverse temperatures, with hot and cold extremes revealing opposite effects: adding flies incrementally decreased their establishment success at the hot extreme, but increased it at the cold extreme. These differing effects at hot and cold thermal extremes implies that different establishment mechanisms are at play at either extreme. These results suggest that the effort required to prevent (or conversely, to facilitate) the establishment of populations varies with the environment in ways that can be complicated but predictable.

Seagrass restoration can help reverse global meadow loss and restore ecosystem services, including habitat provision for commercial fish and shellfish, carbon sequestration, and improved water quality. However, restoration projects are generally expensive, and site selection remains a challenge due to uncertainty about how environmental variables affect the survival and spread of seedlings. Long-term Zostera marina (eelgrass) success/failure and expansion data from the Virginia Coast Reserve can be used to determine whether the factors that control seedling survival also explain the regional distribution of seagrass meadows. We tracked plant survival and failure within restoration plots and at natural recruitment sites from 2001 to 2015 and used machine learning methods to identify the relative importance of multiple environmental predictors, including water residence time, fetch distance, water temperature, depth, and sediment grain size. Low water residence time was the best predictor of survival, but short fetch length best explained the natural recruit distribution, consistent with hydrodynamic control of seed dispersal. Restoration plot data suggests that the eelgrass fundamental niche covers > 100 km2 within this system, triple both the current extent and the realized niche predicted by the observed natural spread. Our results corroborate historical records that eelgrass was formerly widespread in areas where it has not spread naturally, likely due to insufficient seed delivery. Additional seeding in these areas would, therefore, increase total seagrass coverage and accelerate recovery. Mapping the total habitable area can help managers maximize the extent of seagrass and other bottom uses, including shellfish aquaculture. [ABSTRACT FROM AUTHOR]

Recurrent polyploid formation and weak reproductive barriers between independent polyploid lineages generate intricate species complexes with high diversity and reticulate evolutionary history. Uncovering the evolutionary processes that formed their present-day cytotypic and genetic structure is a challenging task. We studied the species complex of Cardamine pratensis, composed of diploid endemics in the European Mediterranean and diploid-polyploid lineages more widely distributed across Europe, focusing on the poorly understood variation in Central Europe. To elucidate the evolution of Central European populations we analyzed ploidy level and genome size variation, genetic patterns inferred from microsatellite markers and target enrichment of low-copy nuclear genes (Hyb-Seq), and environmental niche differentiation. We observed almost continuous variation in chromosome numbers and genome size in C. pratensis s.str., which is caused by the co-occurrence of euploid and dysploid cytotypes, along with aneuploids, and is likely accompanied by inter-cytotype mating. We inferred that the polyploid cytotypes of C. pratensis s.str. are both of single and multiple, spatially and temporally recurrent origins. The tetraploid Cardamine majovskyi evolved at least twice in different regions by autopolyploidy from diploid Cardamine matthioli. The extensive genome size and genetic variation of Cardamine rivularis reflects differentiation induced by the geographic isolation of disjunct populations, establishment of triploids of different origins, and hybridization with sympatric C. matthioli. Geographically structured genetic lineages identified in the species under study, which are also ecologically divergent, are interpreted as descendants from different source populations in multiple glacial refugia. The postglacial range expansion was accompanied by substantial genetic admixture between the lineages of C. pratensis s.str., which is reflected by diffuse borders in their contact zones. In conclusion, we identified an interplay of diverse processes that have driven the evolution of the species studied, including allopatric and ecological divergence, hybridization, multiple polyploid origins, and genetic reshuffling caused by Pleistocene climate-induced range dynamics.

Since alien species may threaten native ecosystems when becoming invasive, one of the main challenges is try to predict their potential spread. Despite bees are essential pollinators and provide important ecosystem services in their native areas, outside these areas they could represent a risk for the local bee fauna, e.g. by competing for resources or by transmitting pathogens, as it was observed for species of Megachile, the bee genus with the highest number of recorded alien species. Here, using two complementary methods (Multidimensional Envelope procedure (MDE) and the Maximum Entropy algorithm (MaxEnt)), we aim to explore environmental niche as well as to identify potential worldwide distribution of the giant resin bee Megachile sculpturalis, native to Asia and recently introduced in North America and Europe. The two methodological approaches predict an important expansion for the species and reveal a preference for areas of Palearctic and Nearctic regions with reduced temperature fluctuations and moderate precipitation regimes. The Southern hemisphere seems not having good conditions for this species. Estimations for the future (2070) predict a further, though limited expansion to northern areas in the North hemisphere. However, during roughly 25 years of spreading outside its native range, M. sculpturalis clearly expanded the range of inhabitable environmental conditions, which may increase its potential invasiveness in a pattern difficult to predict using only correlative methods. Physiological and ecological data are necessary to better assess the potential niche of this bee species and in consequence to better predict its future spreading dynamics.

Recurrent polyploid formation and weak reproductive barriers between independent polyploid lineages generate intricate species complexes with high diversity and reticulate evolutionary history. Uncovering the evolutionary processes that formed their present-day cytotypic and genetic structure is a challenging task. We studied the species complex of Cardamine pratensis , composed of diploid endemics in the European Mediterranean and diploid-polyploid lineages more widely distributed across Europe, focusing on the poorly understood variation in Central Europe. To elucidate the evolution of Central European populations we analyzed ploidy level and genome size variation, genetic patterns inferred from microsatellite markers and target enrichment of low-copy nuclear genes (Hyb-Seq), and environmental niche differentiation. We observed almost continuous variation in chromosome numbers and genome size in C. pratensis s.str., which is caused by the co-occurrence of euploid and dysploid cytotypes, along with aneuploids, and is likely accompanied by inter-cytotype mating. We inferred that the polyploid cytotypes of C. pratensis s.str. are both of single and multiple, spatially and temporally recurrent origins. The tetraploid Cardamine majovskyi evolved at least twice in different regions by autopolyploidy from diploid Cardamine matthioli. The extensive genome size and genetic variation of Cardamine rivularis reflects differentiation induced by the geographic isolation of disjunct populations, establishment of triploids of different origins, and hybridization with sympatric C. matthioli. Geographically structured genetic lineages identified in the species under study, which are also ecologically divergent, are interpreted as descendants from different source populations in multiple glacial refugia. The postglacial range expansion was accompanied by substantial genetic admixture between the lineages of C. pratensis s.str., which is reflected by diffuse borders in their contact zones. In conclusion, we identified an interplay of diverse processes that have driven the evolution of the species studied, including allopatric and ecological divergence, hybridization, multiple polyploid origins, and genetic reshuffling caused by Pleistocene climate-induced range dynamics. [ABSTRACT FROM AUTHOR]

Many marine species exhibit poleward migrations following climate change. The Barents Sea, a doorstep to the fast‐warming Arctic, is experiencing large scale changes in its environment and its communities. Tracking and anticipating changes for management and conservation purposes at the scale of the ecosystem necessitate quantitative knowledge on individual species distribution drivers. This paper aims at identifying the factors controlling demersal habitats in the Barents Sea, investigating for which species we can predict current and future habitats and inferring those most likely to respond to climate change. We used non‐linear quantile regressions (QGAM) to model the upper quantile of the biomass response of 33 fish species to 10 environmental gradients and revealed three environmental niche typologies. Four main predictors seem to be limiting species habitat: bottom and surface temperature, salinity, and depth. We highlighted three cases of present and future habitat predictability: (a) Habitats of widespread species are not likely to be limited by the existing conditions within the Barents Sea. (b) Habitats limited by a single factor are predictable and could shift if impacted by climate change. If the factor is depth, the habitat may stagnate or shrink if the environment becomes unsuitable. (c) Habitats limited by several factors are also predictable but need to be predicted from QGAM applied on projected environmental maps. These modeled suitable habitats can serve as input to species distribution forecasts and end‐to‐end models, and inform fisheries and conservation management. [ABSTRACT FROM AUTHOR]

The establishment of cattle ranches throughout the world has prompted the release of dung beetles as biological control agents that reduce pasture fouling and control dung‐breeding flies. One of these beetles, Digitonthophagus gazella (Fabricius) (Coleoptera: Scarabaeidae), that is native to southeast Africa, has been introduced into the Americas, Australia, and New Zealand. Distribution records for this species have been used to develop climate models of potential future establishment. Recent studies, however, identify D. gazella as a complex of seven species. Taking into account this revision, and the clear identification of the records belonging to the actual D. gazella, we developed environmental models to identify factors that have contributed to the establishment of this species across regions and habitats. We compared the environmental conditions of D. gazella in its native range against those in the regions where the species has or has not established. Our results indicate that D. gazella is still absent in certain parts of Central and South America and parts of Africa where it could potentially establish. We speculate that its distribution in Africa is limited by competitive exclusion. The introduction of D. gazella in America is relatively recent, such that the full extent of its distribution has probably yet to be realized. In Australia and North America, D. gazella is present in regions not predicted according to its native environmental conditions. This discrepancy may reflect a lack of competitive exclusion, phenotypic plasticity, and/or genetic adaptation. Our analyses suggest that the species has the ability to adapt to a wide range of environmental conditions that are extremely different from those in their native region. The species represents a useful case study to indicate that an introduced species may expand its realized niche beyond what is expected based on apparent environmental limits in the species native range. [ABSTRACT FROM AUTHOR]

The tropics of the New World are a biodiversity hotspot, the genus Anthurium being an example of a megadiverse taxon with currently > 1000 described species. In this study, we provide detailed information on species distributions and analyse patterns of diversity and endemism, with a particular focus on the comparison of epiphytic and terrestrial congenerics. Using a dataset of occurrence records for 1041 Anthurium spp. (c. 98% of the genus), we modelled geographical species distributions using climate-based species distribution models or buffered convex hulls depending on the number of occurrences available. We identified nine bioregions using cluster analysis. The Andean slopes, Central America, the Chocó and the Atlantic Forest in eastern Brazil are the most important centres of diversity for Anthurium , whereas endemism is highest in the central Andes. These macroecological patterns agree largely with diversity centres for other Neotropical plant groups. Epiphytes, accounting for about two-thirds of all species, have much larger range sizes than terrestrials, but do not differ in elevational ranges. Almost 40% of all Anthurium spp. are restricted to the lowlands, but a few species grow at elevations of almost 4000 m. Although individual species have an average elevation range of just c. 1000 m, there are taxa that cover > 3500 m of elevation. [ABSTRACT FROM AUTHOR]

To test ecological niche theory, this study investigated the spatial patterns and the environmental niches of native and non‐native fishes within the invaded Great Fish River system, South Africa. For the native fishes, there were contrasting environmental niche breadths that varied from being small to being large and overlapped for most species, except minnows that were restricted to headwater tributaries. In addition, there was high niche overlap in habitat association among fishes with similar distribution. It was therefore inferred that habitat filtering‐driven spatial organisation was important in explaining native species distribution patterns. In comparison, most non‐native fishes were found to have broad environmental niches and these fishes showed high tolerance to environmental conditions, which generally supported the niche opportunity hypothesis. The proliferation of multiple non‐native fishes in the mainstem section suggest that they form a functional assemblage that is probably facilitated by the anthropogenic modification of flow regimes through inter‐basin water transfer. Based on the distribution patterns observed in the study, it was inferred that there was a likelihood of negative interactions between native and non‐native fishes. Such effects are likely to be exacerbated by altered flow regime that was likely to have negative implications for native ichthyofauna. [ABSTRACT FROM AUTHOR]

Premise: Worldwide, ecosystems are threatened by global changes, including biological invasions. Invasive species arriving in novel environments experience new climatic conditions that can affect their successful establishment. Determining the response of functional traits and fitness components of invasive populations from contrasting environments can provide a useful framework to assess species responses to climate change and the variability of these responses among source populations. Much research on macrophytes has focused on establishment from clonal fragments; however, colonization from sexual propagules has rarely been studied. Our objective was to compare trait responses of plants generated from sexual propagules sourced from three climatic regions but grown under common environmental conditions, using L. peploides subsp. montevidensis as a model taxon. Methods: We grew seedlings to reproductive stage in experimental mesocosms under a mediterranean California (MCA) climate from seeds collected in oceanic France (OFR), mediterranean France (MFR), and MCA. Results: Seed source region was a major factor influencing differences among invasive plants recruiting from sexual propagules of L. peploides subsp. montevidensis. Trait responses of young individual recruits from MCA and OFR, sourced from geographically distant and climatically distinct source regions, were the most different. The MCA individuals accumulated more biomass, flowered earlier, and had higher leaf N concentrations than the OFR plants. Those from MFR had intermediate profiles. Conclusions: By showing that the closer a seedling is from its parental climate, the better it performs, this study provides new insights to the understanding of colonization of invasive plant species and informs its management under novel and changing environmental conditions. [ABSTRACT FROM AUTHOR]

Aim: The Hutchinsonian niche is a foundational concept in ecology and evolutionary biology that describes fundamental characteristics of any species: the global maximum population growth rate (rmax); the niche optimum (the environment for which rmax is reached); and the niche width (the environmental range for which intrinsic population growth rates are positive). We examine whether these characteristics are related to inter‐ and intraspecific variation in functional traits. Location: Cape Floristic Region, South Africa. Time period: Present day. Major taxa studied: Twenty‐six plant species (Proteaceae). Methods: We measured leaf, plant‐architectural and seed traits across species geographical ranges. We then examined how species‐mean traits are related to demographically derived niche characteristics of rmax, in addition to niche optima and widths in five environmental dimensions, and how intraspecific trait variation is related to niche widths. Results: Interspecific trait variation generally exceeded range‐wide intraspecific trait variation. Species‐mean trait values were associated with variation in rmax (R2 = 0.27) but were more strongly related to niche optima (mean R2 = 0.56). These relationships generally matched trait–environment associations described in the literature. Both species‐mean traits and intraspecific trait variability were strongly related to niche widths (R2 = 0.66 and 0.59, respectively). Moreover, niche widths increased with intraspecific trait variability. Overall, the different niche characteristics were associated with few, largely non‐overlapping sets of traits. Main conclusions: Our study relating functional traits to Hutchinsonian niches demonstrates that key demographic properties of species relate to few traits with relatively strong effects. Our results further support the hypothesis that intraspecific trait variation increases species niche widths. Given that niche characteristics were related to distinct sets of traits, different aspects of environmental change might affect axes of trait variation independently. Trait‐based studies of Hutchinsonian niches thus yield important insights into the mechanisms shaping functional biodiversity, which should reinforce the role of traits in functional biogeography. [ABSTRACT FROM AUTHOR]

Aim: To provide distribution information and preliminary conservation assessments for all species of the pineapple family (Bromeliaceae), one of the most diverse and ecologically important plant groups of the American tropics—a global biodiversity hotspot. Furthermore, we aim to analyse patterns of diversity, endemism and the conservation status of the Bromeliaceae on the continental level in the light of their evolutionary history. Location: The Americas. Methods: We compiled a dataset of occurrence records for 3,272 bromeliad species (93.4% of the family) and modelled their geographic distribution using either climate‐based species distribution models, convex hulls or geographic buffers dependent on the number of occurrences available. We then combined this data with information on taxonomy and used the ConR software for a preliminary assessment of the conservation status of all species following Criterion B of the International Union for the Conservation of Nature (IUCN). Results: Our results stress the Atlantic Forest in eastern Brazil, the Andean slopes, Central America and the Guiana Highlands as centres of bromeliad diversity and endemism. Phylogenetically ancient subfamilies of bromeliads are centred in the Guiana highlands whereas the large radiations of the group spread across different habitats and large geographic area. A total of 81% of the evaluated bromeliad species are Possibly Threatened with extinction. We provide range polygons for 3,272 species, as well as newly georeferenced point localities for 911 species in the novel "bromeliad" r package, together with functions to generate diversity maps for individual taxonomic or functional groups. Main conclusions: Diversity centres of the Bromeliaceae agreed with macroecological patterns of other plant and animal groups, but show some particular patterns related to the evolutionary origin of the family, especially ancient dispersal corridors. A staggering 2/3rds of Bromeliaceae species might be threatened with extinction, especially so in tropical rain forests, raising concerns about the conservation of the family and bromeliad‐dependent animal species. [ABSTRACT FROM AUTHOR]

Aim: Locally abundant species are usually widespread, and this pattern has been related to properties of the niches and traits of species. However, such explanations fail to account for the potential of traits to determine species niches and often overlook statistical artefacts. Here, we examine how trait distinctiveness determines the abilities of species to exploit either common habitats (niche position) or a range of habitats (niche breadth) and how niche position and breadth, in turn, affect abundance and occupancy. We also examine how statistical artefacts moderate these relationships. Location: Sixteen sites in the Neotropics. Time period: 1993–2014. Major taxa studied: Aquatic invertebrates from tank bromeliads. Methods: We measured the environmental niche position and breadth of each species and calculated its trait distinctiveness as the average trait difference from all other species at each site. Then, we used a combination of structural equation models and a meta‐analytical approach to test trait–niche relationships and a null model to control for statistical artefacts. Results: The trait distinctiveness of each species was unrelated to its niche properties, abundance and occupancy. In contrast, niche position was the main predictor of abundance and occupancy; species that used the most common environmental conditions found across bromeliads were locally abundant and widespread. Contributions of niche breadth to such patterns were attributable to statistical artefacts, indicating that effects of niche breadth might have been overestimated in previous studies. Main conclusions: Our study reveals the generality of niche position in explaining one of the most common ecological patterns. The robustness of this result is underscored by the geographical extent of our study and our control of statistical artefacts. We call for a similar examination across other systems, which is an essential task to understand the drivers of commonness across the tree of life. [ABSTRACT FROM AUTHOR]

In this paper we analyzed environmental differentiation of closely related species from the Merodon ruficornis group. By applying principal component analysis (PCA) and environmental niche modelling (ENM)-based techniques, we estimated the level of niche divergence of closely related species. Our results indicate that ecology has an important role in the diversification process in related species from the M. ruficornis group. Distribution patterns of all analyzed species are mainly affected by the limiting effects of the temperature of the coldest quarter and month, as well as by the precipitation of the wettest and driest quarters. Our results demonstrated that among all related species, with the exception of M. ovaloides, overall or partial divergence in environmental space is present. Importantly, the results indicate that the environmental niches of all endemic species are restricted to smaller parts of the environmental space. In the case of niche overlap, the niches of endemic species are placed along the border of the realized niche of the widespread related species. For species in which distribution is not limited by geographical barriers, environmental preferences could be considered as limiting factors for further expansion, as in the case of M. alexandri, a lowland species with very strict climatic adaptations. Knowledge about the environmental factors that might influence the diversification process can provide an explanation for the high diversity in other Merodon species groups.

The entomophilous pollination niche (abundance, phenotypic traits, foraging behaviours and environmental tolerances of insect pollinators) helps to understand and better manage crop pollination. We apply this niche approach to assess how an entomophilous crop (blueberry, Vaccinium ashei) can be expanded into new territories (i.e., northern Spain) far from their original area of domestication (North America). Insect visits to blueberry flowers were monitored in a plantation on 12 different days, at 8 different times during day and covering various weather conditions. Abundance, visitation rate, pollen gathering behaviour, and frequency of inter-plant and inter-row movements were recorded. The pollinator assemblage was basically composed of one managed honeybee species (50.8% of visits) and three native bumblebee species (48.3%). There was a marked pattern of seasonal segregation throughout bloom, with bumblebees dominating the early bloom and honeybee the late bloom. Pollinators also segregated along gradients of daily temperature and relative humidity. Finally, the two pollinator types differed in foraging behaviour, with bumblebees having a visitation rate double that of honeybee, collecting pollen more frequently and changing plant and row more frequently. The spatio-temporal and functional complementarity between honeybee and bumblebees suggested here encourages the consideration of an integrated crop pollination strategy for blueberries, based on the concurrence of both wild and managed bees.