25 results on '"De Champs C"'
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2. Detection of different classes of carbapenemases: Adaptation and assessment of a phenotypic method applied to Enterobacteriaceae, Pseudomonas aeruginosa and Acinetobacter baumannii, and proposal of a new algorithm.
- Author
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Gautier G, Guillard T, Podac B, Bercot B, Vernet-Garnier V, and de Champs C
- Subjects
- Bacterial Proteins classification, Molecular Biology methods, Penicillins pharmacology, Phenotype, Sensitivity and Specificity, beta-Lactamases classification, beta-Lactams pharmacology, Acinetobacter baumannii enzymology, Algorithms, Bacterial Proteins isolation & purification, Bacteriological Techniques methods, Enterobacteriaceae enzymology, Microbial Sensitivity Tests methods, Pseudomonas aeruginosa enzymology, Reagent Kits, Diagnostic, beta-Lactamases isolation & purification
- Abstract
A new phenotypic method for detecting carbapenemases has been adapted (assembling of two MAST® kits, including one that contains faropenem to which a temocillin disk has been added) then assessed using 101 bacterial strains (Enterobacteriaceae with assays on Pseudomonas aeruginosa and Acinetobacter baumannii) including 62 which produce genetically identified carbapenemases. Concerning Carbapenemase-Producing Enterobacteriaceae (CPE), there is 100% sensitivity for Klebsiella pneumoniae carbapenemase (KPC, Ambler class A) and OXA-48 (Ambler class D), and 91% for metallo-beta-lactamase (MBL, Ambler class B), with a 97% sensitivity for all carbapenemases, with a specificity of 100%. The test is also efficient for detecting Pseudomonas aeruginosa carbapenemases (sensitivity between 82 and 100% and 100% specificity). The major innovation is the combined use of faropenem and temocillin for reliable detection (excellent performance with 100% sensitivity and specificity) of OXA-48. This study has led to the development of a new algorithm to detect the different classes of carbapenemases, for first-line diagnosis, by combining this modified MAST® test with immunochromatographic methods and molecular biology techniques., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
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3. Characterization of quinolone resistance mechanisms in Enterobacteriaceae isolated from companion animals in Europe (ComPath II study).
- Author
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de Jong A, Muggeo A, El Garch F, Moyaert H, de Champs C, and Guillard T
- Subjects
- Animals, Anti-Bacterial Agents pharmacology, Bacterial Proteins genetics, Cat Diseases epidemiology, Cat Diseases microbiology, Cats, Dog Diseases epidemiology, Dog Diseases microbiology, Dogs, Enterobacter cloacae drug effects, Enterobacter cloacae genetics, Enterobacteriaceae classification, Enterobacteriaceae isolation & purification, Enterobacteriaceae Infections epidemiology, Enterobacteriaceae Infections microbiology, Klebsiella pneumoniae drug effects, Klebsiella pneumoniae genetics, Microbial Sensitivity Tests, Plasmids drug effects, Drug Resistance, Multiple, Bacterial genetics, Enterobacteriaceae drug effects, Enterobacteriaceae genetics, Enterobacteriaceae Infections veterinary, Pets microbiology, Quinolones pharmacology
- Abstract
ComPath is an ongoing European programme dedicated to monitor antibiotic susceptibility of bacterial pathogens from diseased dogs and cats. The objective was to characterize determinants associated with quinolone resistance among 160 enrofloxacin non-wild type strains (100 Escherichia coli, 45 Proteus mirabilis, 14 Klebsiella pneumoniae, 1 Enterobacter cloacae) selected among 843 non-duplicate Enterobacteriaceae isolates collected in 12 European countries (2013-2014). These strains with non-wild type MICs of ≥0.25 mg/L, for P. mirabilis ≥0.5 mg/L, were screened for PMQR determinants (qnr, oqxAB, qepA and aac(6')-Ib-cr), and for QRDR mutations in gyrA, gyrB, parC and parE genes. Among them, 20% (32/160) carried at least one PMQR (18/32 qnrB, qnrS or qnrD, 10/32 aac(6')-Ib-cr and 13/32 oqxAB), and 80% (128/160) no PMQR. qnrB was detected in 3 E. coli, 2 K. pneumoniae and 1 E. cloacae strains; qnrS in 6 E. coli and 1 P. mirabilis and aac(6')-Ib-cr in 4 E. coli, 5 K. pneumoniae and 1 E. cloacae strains. All qnrD1 were detected in P. mirabilis. oqxAB was detected in 12/14 K. pneumoniae and 1 E. cloacae. No qepA genes were detected. From the 32 PMQR-positive strains, 10 showed enrofloxacin MICs ≤2 mg/L and 22 MICs ≥8 mg/L, the latter carrying 1-4 mutations in QRDR. For the 128 non-PMQR strains, 37 showed enrofloxacin MICs ≤2 mg/L with 0-2 QRDR mutations, and 91 MICs ≥4 mg/L carrying 1-4 QRDR mutations. In conclusion, qnr was the major PMQR and qnrD only detected in Proteeae. Mutations in QRDR play a markedly greater role in mediating fluoroquinolone resistance than PMQR., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
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4. Characterization of quinolone resistance mechanisms in Enterobacteriaceae recovered from diseased companion animals in Europe.
- Author
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Guillard T, de Jong A, Limelette A, Lebreil AL, Madoux J, and de Champs C
- Subjects
- Animals, Cats, Dogs, Enterobacteriaceae Infections microbiology, Europe, Microbial Sensitivity Tests, Mutation, Pets, Cat Diseases microbiology, Dog Diseases microbiology, Drug Resistance, Bacterial genetics, Enterobacteriaceae drug effects, Enterobacteriaceae genetics, Enterobacteriaceae Infections veterinary, Quinolones pharmacology
- Abstract
ComPath is a European monitoring programme dedicated to the collection of bacterial pathogens from diseased dogs and cats to determine their antibiotic susceptibility. The objective was to characterize genetic determinants associated with quinolone resistance among 69 enrofloxacin non-wild type strains selected among 604 non-duplicate Enterobacteriaceae isolates collected in 10EU countries from 2008 to 2010: quinolone resistance determining region (QRDR) and plasmid-mediated quinolone resistance (PMQR). Among them, 17% (12/69) carried at least one PMQR (9/12 qnrB, qnrS or qnrD and 4/12 aac(6')-Ib-cr) and 83% (57/69) no PMQR. All the Klebsiella pneumoniae isolates chromosomally carried oqxAB . No qepA genes were detected. Eight strains did not carry any mutations in QRDR (4 PMQR-positive and 4 PMQR-negative strains). From the 12 PMQR-positive strains, 4 showed enrofloxacin MICs≤2μg/mL, and 8 MICs≥8μg/mL (resistant). These latter strains carried 1-5 mutations in QRDR, including a ParE I529L mutation. qnrD was found in 2 Proteus mirabilis and the plasmids were similar to pDIJ09-518a previously described. For the 57 non-PMQR strains, 29 strains showed MICs≤2μg/mL (4 with no QRDR mutations, 21 with 1 mutation in GyrA, 4 with 2 mutations in GyrA) and 28 showed enrofloxacin MICs≥8μg/mL carrying at least 2 mutations in QRDR, including a ParE I529L mutation for 2 Escherichia coli strains with a total of 5 QRDR mutations. No GyrB mutations were found. qnr was the major PMQR and qnrD was only detected in Proteus spp. Twelve strains carried at least 4 mutations., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2016
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5. Discrimination between native and Tn6010-associated oqxAB in Klebsiella spp., Raoultella spp., and other Enterobacteriaceae by using a two-step strategy.
- Author
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Guillard T, Lebreil AL, Hansen LH, Kisserli A, Berger S, Lozniewski A, Alauzet C, and de Champs C
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- Microbial Sensitivity Tests, Polymerase Chain Reaction, Anti-Bacterial Agents pharmacology, Enterobacteriaceae drug effects, Klebsiella drug effects
- Abstract
We developed a two-step PCR-based strategy to detect genes encoding OqxAB, allowing a specific assignment of Tn6010-associated oqxAB in Enterobacteriaceae. Chromosomal location in this setup was confirmed by hybridization with I-CeuI-restricted genomes. This approach led us to find that Klebsiella sp. and Raoultella sp. reference strains chromosomally carried oqxAB., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
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6. Molecular characterization and epidemiology of cefoxitin resistance among Enterobacteriaceae lacking inducible chromosomal ampC genes from hospitalized and non-hospitalized patients in Algeria: description of new sequence type in Klebsiella pneumoniae isolates.
- Author
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Gharout-Sait A, Touati A, Guillard T, Brasme L, and de Champs C
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- Algeria, Bacterial Proteins genetics, DNA, Bacterial genetics, Enterobacteriaceae isolation & purification, Genotype, Humans, Klebsiella pneumoniae drug effects, Klebsiella pneumoniae isolation & purification, Microbial Sensitivity Tests, Polymerase Chain Reaction, Sequence Analysis, DNA, beta-Lactam Resistance, beta-Lactamases genetics, Anti-Bacterial Agents pharmacology, Cefoxitin pharmacology, Enterobacteriaceae drug effects, Enterobacteriaceae genetics, Klebsiella pneumoniae genetics
- Abstract
In this study, 922 consecutive non-duplicate clinical isolates of Enterobacteriaceae obtained from hospitalized and non-hospitalized patients at Bejaia, Algeria were analyzed for AmpC-type β-lactamases production. The ampC genes and their genetic environment were characterized using polymerase chain reaction (PCR) and sequencing. Plasmid incompatibility groups were determined by using PCR-based replicon typing. Phylogenetic grouping and multilocus sequence typing were determined for molecular typing of the plasmid-mediated AmpC (pAmpC) isolates. Of the isolates, 15 (1.6%) were identified as AmpC producers including 14 CMY-4-producing isolates and one DHA-1-producing Klebsiella pneumoniae. All AmpC-producing isolates co-expressed the broad-spectrum TEM-1 β-lactamase and three of them co-produced CTX-M and/or SHV-12 ESBL. Phylogenetic grouping and virulence genotyping of the E. coli isolates revealed that most of them belonged to groups D and B1. Multilocus sequence typing analysis of K. pneumoniae isolates identified four different sequence types (STs) with two new sequences: ST1617 and ST1618. Plasmid replicon typing indicates that blaCMY-4 gene was located on broad host range A/C plasmid, while LVPK replicon was associated with blaDHA-1. All isolates carrying blaCMY-4 displayed the transposon-like structures ISEcp1/ΔISEcp1-blaCMY-blc-sugE. Our study showed that CMY-4 was the main pAmpC in the Enterobacteriaceae isolates in Algeria., (Copyright © 2015 Elsevier Editora Ltda. All rights reserved.)
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- 2015
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7. Use of avibactam to detect Ambler class A carbapenemases and OXA-48 β-lactamases in Enterobacteriaceae.
- Author
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Porres-Osante N, de Champs C, Dupont H, Torres C, and Mammeri H
- Subjects
- Humans, Microbial Sensitivity Tests methods, Azabicyclo Compounds, Enterobacteriaceae enzymology, beta-Lactamase Inhibitors, beta-Lactamases analysis
- Published
- 2014
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8. Mobile insertion cassette elements found in small non-transmissible plasmids in Proteeae may explain qnrD mobilization.
- Author
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Guillard T, Grillon A, de Champs C, Cartier C, Madoux J, Berçot B, Lebreil AL, Lozniewski A, Riahi J, Vernet-Garnier V, and Cambau E
- Subjects
- Base Sequence, Drug Resistance, Bacterial genetics, Enterobacteriaceae drug effects, Gene Order, Genes, Bacterial, Microbial Sensitivity Tests, Molecular Sequence Data, Plasmids chemistry, DNA Transposable Elements, Enterobacteriaceae genetics, Plasmids genetics
- Abstract
qnrD is a plasmid mediated quinolone resistance gene from unknown origin, recently described in Enterobacteriaceae. It encodes a pentapeptide repeat protein 36-60% different from the other Qnr (A, B, C, S and VC). Since most qnrD-positive strains were described as strains belonging to Proteus or Providencia genera, we hypothesized that qnrD originated in Proteeae before disseminating to other enterobacterial species. We screened 317 strains of Proteeae for qnrD and its genetic support by PCR. For all the seven qnrD-positive strains (4 Proteus mirabilis, 1 Proteus vulgaris and 2 Providencia rettgeri) the gene was carried onto a small non-transmissible plasmid, contrarily to other qnr genes that are usually carried onto large multi-resistant plasmids. Nucleotide sequences of the qnrD-bearing plasmids were 96% identical. Plasmids contained 3 ORFs apart from qnrD and belonged to an undescribed incompatibility group. Only one plasmid, in P. vulgaris, was slightly different with a 1,568-bp insertion between qnrD and its promoter, leading to absence of quinolone resistance. We sought for similar plasmids in 15 reference strains of Proteeae, but which were tested negative for qnrD, and found a 48% identical plasmid (pVERM) in Providencia vermicola. In order to explain how qnrD could have been inserted into such native plasmid, we sought for gene mobilization structures. qnrD was found to be located within a mobile insertion cassette (mic) element which sequences are similar to one mic also found in pVERM. Our conclusions are that (i) the small non-transmissible qnrD-plasmids described here may result from the recombination between an as-yet-unknown progenitor of qnrD and pVERM, (ii) these plasmids are maintained in Proteeae being a qnrD reservoir (iii) the mic element may explain qnrD mobilization from non-transmissible plasmids to mobilizable or conjugative plasmids from other Enterobacteriaceae, (iv) they can recombined with larger multiresistant plasmids conjugated in Proteeae.
- Published
- 2014
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9. High-resolution melting analysis for rapid characterization of qnr alleles in clinical isolates and detection of two novel alleles, qnrB25 and qnrB42.
- Author
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Guillard T, de Champs C, Moret H, Bertrand X, Scheftel JM, and Cambau E
- Subjects
- Bacteriological Techniques methods, DNA, Bacterial chemistry, Enterobacteriaceae drug effects, Enterobacteriaceae Infections microbiology, Humans, Mass Screening methods, Molecular Sequence Data, Sequence Analysis, DNA, Anti-Bacterial Agents pharmacology, DNA, Bacterial genetics, Drug Resistance, Bacterial, Enterobacteriaceae genetics, Quinolones pharmacology, Real-Time Polymerase Chain Reaction methods, Transition Temperature
- Abstract
Objectives: qnr genes are plasmid-mediated quinolone resistance genes. Five qnr families have been described with several alleles (7 alleles of qnrA, 53 alleles of qnrB, 1 allele of qnrC, 1 allele of qnrD and 6 alleles of qnrS). Their detection requires a PCR specific for each qnr family and further sequencing for allele characterization., Methods: High-resolution melt curve analysis (HRMA) was coupled to multiplex and simplex real-time PCR assays for detection and characterization of qnrA, qnrB and qnrS alleles. The protocol was set using 27 reference strains harbouring the most frequent alleles and was applied to 55 clinical isolates unknown for qnr positivity., Results: Out of the 27 reference strains tested, 21 alleles showed distinct profiles using HRMA: 6 qnrA, 12 qnrB and 3 qnrS. For the qnrB alleles showing similar profiles, we gathered them into four groups that were easily distinguished. For the alleles that we could not test, in silico analysis showed that they would be identified using the HRMA protocol set. Among the clinical isolates, 28 qnr-positive isolates were detected and the qnr allele was characterized as 8 qnrA1, 4 qnrB1, 5 qnrB2, 3 qnrB4, 1 qnrB8, 1 qnrB5, 3 qnrS1 and 1 qnrS2, with concordant results with PCR sequencing. Two new qnrB alleles were detected and distinguished using HMRA. They were further designated as qnrB25 and qnrB42., Conclusions: We developed an HRMA assay for characterizing the qnr alleles in clinical isolates. This high-throughput method can be used to screen a large number of isolates. This method allowed the detection of new qnrB alleles.
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- 2012
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10. Rapid detection of qnr and qepA plasmid-mediated quinolone resistance genes using real-time PCR.
- Author
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Guillard T, Moret H, Brasme L, Carlier A, Vernet-Garnier V, Cambau E, and de Champs C
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- Benzothiazoles, Diamines, Enterobacteriaceae drug effects, Enterobacteriaceae isolation & purification, Enterobacteriaceae Infections microbiology, Genes, Bacterial, Humans, Microbial Sensitivity Tests methods, Organic Chemicals metabolism, Quinolines, Staining and Labeling methods, Anti-Bacterial Agents pharmacology, DNA, Bacterial genetics, Drug Resistance, Bacterial, Enterobacteriaceae genetics, Plasmids, Polymerase Chain Reaction methods, Quinolones pharmacology
- Abstract
Plasmid-mediated quinolone resistance genes in clinical strains cannot be detected by phenotypic traits but require gene detection. We developed a multiplex real-time polymerase chain reaction (PCR) assay using high-resolution melting master mix with ResoLight dye to detect qnr genes and a simplex real-time PCR assay using SYBR Green I to detect qepA genes. Using qnr-positive and qepA1-positive control strains, the ResoLight method was able to rapidly identify qnrA, qnrB, qnrS, qnrC, and qnrD genes; the SYBR Green I method identified qepA genes. Among 118 extended spectrum beta-lactamase-producing Enterobacteriaceae isolates, the 2 new assays efficiently detected and identified qnr in 9 strains, but no qepA gene. To our knowledge, this is the first study describing the detection of all 5 qnr and qepA genes using real-time PCR. The 2 tests constitute a significant step forward for screening for plasmid quinolone resistance genes in clinical strains., (Copyright © 2011 Elsevier Inc. All rights reserved.)
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- 2011
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11. [Real-time PCR for fast detection of plasmid-mediated qnr genes in extended spectrum beta-lactamase producing Enterobacteriaceae].
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Guillard T, Cavallo JD, Cambau E, Duval V, Bajolet O, Brasme L, de Champs C, and Vernet-Garnier V
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- Anti-Bacterial Agents pharmacology, Benzothiazoles, Citrobacter drug effects, Citrobacter enzymology, Citrobacter genetics, Diamines, Enterobacter drug effects, Enterobacter enzymology, Enterobacter genetics, Enterobacteriaceae drug effects, Enterobacteriaceae enzymology, Escherichia coli drug effects, Escherichia coli enzymology, Escherichia coli genetics, Escherichia coli Proteins genetics, Fluorescent Dyes, Klebsiella pneumoniae drug effects, Klebsiella pneumoniae enzymology, Klebsiella pneumoniae genetics, Organic Chemicals, Quinolines, Bacterial Proteins genetics, Computer Systems, Drug Resistance, Multiple, Bacterial genetics, Enterobacteriaceae genetics, Fluoroquinolones pharmacology, Polymerase Chain Reaction methods, R Factors genetics, beta-Lactamases genetics, beta-Lactams pharmacology
- Abstract
Aim of the Study: To develop a fast and reliable real time PCR technique for detecting plasmid-mediated quinolone resistance genes qnrA, qnrB and qnrS., Methods: A real-time PCR assay using SYBR Green I and Roche LightCycler(®) was developed to detect qnr genes. Detection of qnr genes was based on comparison of melting temperature differences with a positive control of each qnr genes. This assay was performed to study 138 isolates collected from diagnostic and screening samples in the Champagne-Ardenne region in 2004 (France)., Results: In optimized conditions, the three positive controls tested alone and with isolates confirmed the specificity of the PCR primers. Each PCR assay was able to test 30 strains in 60min for 1 qnr gene. Out of 138 isolates screened, 3.6 % isolates were positive for a qnrA1, 1.5 % for qnrS1 and no qnrB-like gene. Prevalence of qnr determinants was 5 % and reached 9.5 % in clinical isolates., Conclusion: Real-time PCR is a fast and reliable technique for screening of qnr-positive strains. This study shows a relatively high prevalence of qnr determinants (5 %) among ESBL-producing Enterobacteriaceae., (Copyright © 2009 Elsevier Masson SAS. All rights reserved.)
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- 2010
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12. Extended-spectrum beta-lactamase characterisation and heavy metal resistance of Enterobacteriaceae strains isolated from hospital environmental surfaces.
- Author
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Touati A, Zenati K, Brasme L, Benallaoua S, and de Champs C
- Subjects
- Bacterial Proteins biosynthesis, Cations, Divalent toxicity, Enterobacteriaceae drug effects, Enterobacteriaceae enzymology, Humans, Microbial Sensitivity Tests, Cross Infection microbiology, Drug Resistance, Bacterial, Enterobacteriaceae isolation & purification, Enterobacteriaceae Infections microbiology, Environmental Microbiology, Metals, Heavy toxicity, beta-Lactamases biosynthesis
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- 2010
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13. Rapid detection of aac(6')-Ib-cr quinolone resistance gene by pyrosequencing.
- Author
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Guillard T, Duval V, Moret H, Brasme L, Vernet-Garnier V, and de Champs C
- Subjects
- Bacteriological Techniques methods, Base Sequence, DNA, Bacterial chemistry, DNA, Bacterial genetics, Humans, Molecular Sequence Data, Plasmids, Sensitivity and Specificity, Anti-Bacterial Agents pharmacology, Drug Resistance, Bacterial, Enterobacteriaceae drug effects, Enterobacteriaceae genetics, Genes, Bacterial, Quinolones pharmacology, Sequence Analysis methods
- Abstract
Pyrosequencing was used to rapidly detect aac(6')-Ib and aac(6')-Ib-cr genes. This plasmid-mediated quinolone resistance determinant is increasing in extended-spectrum beta-lactamase-producing Enterobacteriaceae. This method is faster and more cost-effective than the methods previously described. Sequences obtained with this pyrosequencing method showed 100% concordance with conventional sequencing.
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- 2010
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14. High prevalence of CTX-M-type beta-lactamases among clinical isolates of Enterobacteriaceae in Bamako, Mali.
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Duval V, Maiga I, Maiga A, Guillard T, Brasme L, Forte D, Madoux J, Vernet-Garnier V, and De Champs C
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- Drug Resistance, Bacterial, Enterobacteriaceae drug effects, Humans, Random Amplified Polymorphic DNA Technique, Enterobacteriaceae enzymology, beta-Lactamases genetics
- Published
- 2009
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15. Incidence of class A extended-spectrum beta-lactamases in Champagne-Ardenne (France): a 1 year prospective study.
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Brasme L, Nordmann P, Fidel F, Lartigue MF, Bajolet O, Poirel L, Forte D, Vernet-Garnier V, Madoux J, Reveil JC, Alba-Sauviat C, Baudinat I, Bineau P, Bouquigny-Saison C, Eloy C, Lafaurie C, Siméon D, Verquin JP, Noël F, Strady C, and De Champs C
- Subjects
- Acinetobacter baumannii drug effects, Acinetobacter baumannii genetics, Anti-Bacterial Agents pharmacology, Bacterial Infections epidemiology, Bacterial Infections microbiology, Drug Resistance, Bacterial, Enterobacteriaceae drug effects, Enterobacteriaceae genetics, France epidemiology, Humans, Population Surveillance, Pseudomonas aeruginosa drug effects, Pseudomonas aeruginosa genetics, Time Factors, Acinetobacter baumannii enzymology, Enterobacteriaceae enzymology, Pseudomonas aeruginosa enzymology, beta-Lactamases classification, beta-Lactamases isolation & purification
- Abstract
Objectives: To assess the frequency and diversity of extended spectrum beta-lactamases (ESBLs) in the Champagne-Ardenne region France, and to identify genetic elements associated with the bla(CTX-M) genes., Methods: During 2004, all the non-duplicate isolates of Pseudomonas aeruginosa and Acinetobacter baumannii resistant to ceftazidime and of Enterobacteriaceae intermediate or resistant to ceftazidime and/or cefotaxime, screening samples excluded, were collected in 10 public hospitals and 3 private clinics. bla genes were sequenced and bla(CTX-M) environment characterized by PCR mapping., Results: In Enterobacteriaceae (138/21 861; 0.6%), ESBLs were predominantly TEM-24 (n = 52; 37.7%) and CTX-M-15 (n = 37; 26.8%). Three new enzymes were identified, CTX-M-61 (CTX-M-1 group), TEM- and SHV-type. A. baumannii (n = 5) produced VEB-1 and P. aeruginosa (n = 2) SHV-2a. ISEcp1 was detected in 22/27 strains, disrupted in 7 of them. The IS903-like element was downstream of bla(CTX-M-14) and bla(CTX-M-16). ISCR1 was found upstream of bla(CTX-M-2) and bla(CTX-M-9), and ISCR1 and bla(CTX-M-2) were located on a sul1-type class 1 integron. In comparison with 2001-02, ESBL distribution among Enterobacteriaceae showed an increase in CTX-M-type (44.9% vs 3.7% P < 10(-7)) due to Escherichia coli CTX-M-15 and to the almost total disappearance of TEM-3 (0.9% vs 51.2%). E. coli was the most frequent species (50.0% vs 5.1% in 1998) despite a similar prevalence to that in 1998 (0.5% vs 0.2%)., Conclusions: A careful detection of bla(CTX-M)-type spread to other species would help to anticipate clonal endemics such as those observed in Enterobacter aerogenes TEM-24.
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- 2007
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16. Frequency and diversity of Class A extended-spectrum beta-lactamases in hospitals of the Auvergne, France: a 2 year prospective study.
- Author
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De Champs C, Chanal C, Sirot D, Baraduc R, Romaszko JP, Bonnet R, Plaidy A, Boyer M, Carroy E, Gbadamassi MC, Laluque S, Oules O, Poupart MC, Villemain M, and Sirot J
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- Amino Acid Substitution, Cloning, Molecular, DNA Primers, Enterobacteriaceae enzymology, France epidemiology, Gene Frequency, Humans, Isoelectric Focusing, Population Surveillance, Prospective Studies, Pseudomonas aeruginosa enzymology, Reverse Transcriptase Polymerase Chain Reaction, Cross Infection epidemiology, Cross Infection microbiology, Enterobacteriaceae drug effects, Enterobacteriaceae genetics, Pseudomonas aeruginosa drug effects, Pseudomonas aeruginosa genetics, beta-Lactamases genetics
- Abstract
Objectives: To evaluate the frequency and diversity of extended-spectrum beta-lactamases (ESBLs) produced by Enterobacteriaceae and Pseudomonas aeruginosa in one French region., Methods: During 2001-2002, all the non-duplicate isolates of P. aeruginosa resistant to ceftazidime and of Enterobacteriaceae intermediate or resistant to ceftazidime and/or cefotaxime and/or aminoglycosides with an AAC(6') I phenotype were collected in nine hospitals of the area. ESBL isoelectric points were determined, bla genes were amplified and sequenced and epidemic isolates were genotyped with ERIC2-PCR., Results: ESBLs were observed in 297 Enterobacteriaceae (0.8%). The most frequent were TEM-3 like (n=152; 51.2%) and TEM-24 (n=115; 38.7%). Four new enzymes were observed, TEM-112 (pI 5.4), TEM-113 (pI 6.3), TEM-114 (pI 5.9) and TEM-126 (pI 5.4). Other TEMs were TEM-8, TEM-12, TEM-16, TEM-19, TEM-20, TEM-21, TEM-29 and TEM-71. The other ESBLs were SHV-4, SHV-5 and SHV-12, CTX-M-1, CTX-M-3, CTX-M-14 and CTX-M-15. In 37 P. aeruginosa (0.7%) only one ESBL was observed, PER-1. Five epidemic strains were detected, Serratia marcescens TEM-3 and four observed in several hospitals, Enterobacter aerogenes TEM-24, Citrobacter koseri TEM-3, Proteus mirabilis TEM-3 and P. aeruginosa PER-1., Conclusion: ESBL frequency was lower than in 1998, and CTX-M-type frequency higher (2.1% of ESBLs in 2001, 4.9% in 2002). This long-term survey detected new sporadic enzymes (TEM-112, TEM-113, TEM-114 and TEM-126) and interhospital epidemic strains while avoiding any overestimation of ESBL frequency that may otherwise have occurred because of acute epidemics.
- Published
- 2004
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17. Inducible AmpC beta-lactamase of a new member Enterobacteriaceae.
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Bonnet R, Chanal C, Ageron E, Sirot D, De Champs C, Grimont P, and Sirot J
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- Amino Acid Sequence, Anti-Bacterial Agents pharmacology, Bacterial Proteins chemistry, Bacterial Proteins genetics, Base Sequence, DNA-Directed RNA Polymerases genetics, Enterobacteriaceae drug effects, Enterobacteriaceae genetics, Enzyme Induction, Microbial Sensitivity Tests, Molecular Sequence Data, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, beta-Lactam Resistance, beta-Lactamases chemistry, beta-Lactamases genetics, beta-Lactams pharmacology, Enterobacteriaceae classification, Enterobacteriaceae enzymology, beta-Lactamases biosynthesis
- Abstract
Extensive biochemical testing and 16S rRNA and rpoB sequence analysis revealed that clinical strain CF01Ent1, initially identified as Buttiauxella agrestis by the use of Api 32 biochemical strips, is a new organism in the Enterobacteriaceae family. It produced an inducible AmpC-type beta-lactamase whose sequence shares 69 to 72% identity with those of the other AmpC-type beta-lactamases of ENTEROBACTERIACEAE: This enzyme exhibits an atypical high affinity for all beta-lactams tested.
- Published
- 2002
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18. Novel cefotaximase (CTX-M-16) with increased catalytic efficiency due to substitution Asp-240-->Gly.
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Bonnet R, Dutour C, Sampaio JL, Chanal C, Sirot D, Labia R, De Champs C, and Sirot J
- Subjects
- Amino Acid Sequence, Aspartic Acid genetics, Brazil, DNA, Bacterial analysis, Drug Resistance, Microbial, Enterobacteriaceae drug effects, Enterobacteriaceae genetics, Escherichia coli drug effects, Escherichia coli enzymology, Escherichia coli genetics, Gene Transfer Techniques, Glycine genetics, Humans, Molecular Sequence Data, Sequence Homology, Amino Acid, beta-Lactamases metabolism, Amino Acid Substitution genetics, Cefotaxime pharmacology, Cephalosporin Resistance genetics, Cephalosporins pharmacology, Enterobacteriaceae enzymology, Mutation, beta-Lactamases genetics
- Abstract
Three clinical strains (Escherichia coli Rio-6, E. coli Rio-7, and Enterobacter cloacae Rio-9) collected in 1996 and 1999 from hospitals in Rio de Janeiro (Brazil) were resistant to broad-spectrum cephalosporins and gave a positive double-disk synergy test. Two bla(CTX-M) genes encoding beta-lactamases of pl 7.9 and 8.2 were implicated in this resistance: the bla(CTX-M-9) gene observed in E. coli Rio-7 and E. cloacae Rio-9 and a novel CTX-M-encoding gene, designated bla(CTX-M-16), observed in E. coli strain Rio-6. The deduced amino acid sequence of CTX-M-16 differed from CTX-M-9 only by the substitution Asp-240-->Gly. The CTX-M-16-producing E. coli transformant exhibited the same level of resistance to cefotaxime (MIC, 16 microg/ml) but had a higher MIC of ceftazidime (MIC, 8 versus 1 microg/ml) than the CTX-M-9-producing transformant. Enzymatic studies revealed that CTX-M-16 had a 13-fold higher affinity for aztreonam and a 7.5-fold higher k(cat) for ceftazidime than CTX-M-9, thereby showing that the residue in position 240 can modulate the enzymatic properties of CTX-M enzymes. The two bla(CTX-M-9) genes and the bla(CTX-M-16) gene were located on different plasmids, suggesting the presence of mobile elements associated with CTX-M-encoding genes. CTX-M-2 and CTX-M-8 enzymes were found in Brazil in 1996, and two other CTX-M beta-lactamases, CTX-M-9 and CTX-M-16, were subsequently observed. These reports are evidence of the diversity of CTX-M-type extended-spectrum beta-lactamases in Brazil.
- Published
- 2001
- Full Text
- View/download PDF
19. A 1998 survey of extended-spectrum beta-lactamases in Enterobacteriaceae in France. The French Study Group.
- Author
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De Champs C, Sirot D, Chanal C, Bonnet R, and Sirot J
- Subjects
- Data Collection, France, Humans, Enterobacteriaceae enzymology, beta-Lactamases metabolism
- Abstract
In a 3-month period in 1998, 79 consecutive isolates of Enterobacteriaceae producing an extended-spectrum beta-lactamase (ESBL) were collected. ESBLs were predominantly TEM derivatives (74 of 79): TEM-24-like (40 isolates), TEM-3-like (29 isolates), TEM-21 (3 isolates), and TEM-4 and TEM-52 (1 isolate each). Four isolates produced SHV derivatives SHV-4 (three isolates) and SHV-5 (one isolate), and one strain produced a CTX-M-3 enzyme. The high proportion of TEM-24-like-producing Enterobacter aerogenes isolates (36 of 79) suggests the occurrence of an epidemic strain in France.
- Published
- 2000
- Full Text
- View/download PDF
20. A novel CTX-M beta-lactamase (CTX-M-8) in cefotaxime-resistant Enterobacteriaceae isolated in Brazil.
- Author
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Bonnet R, Sampaio JL, Labia R, De Champs C, Sirot D, Chanal C, and Sirot J
- Subjects
- Amino Acid Sequence, Base Sequence, Brazil, Cephalosporins pharmacology, Cloning, Molecular, DNA, Bacterial analysis, Enterobacteriaceae drug effects, Enterobacteriaceae genetics, Gene Transfer Techniques, Humans, Kinetics, Molecular Sequence Data, Sequence Homology, Amino Acid, beta-Lactamases classification, beta-Lactamases metabolism, beta-Lactams pharmacology, Bacterial Proteins, Cefotaxime pharmacology, Cephalosporin Resistance genetics, Enterobacteriaceae enzymology, beta-Lactamases genetics
- Abstract
To estimate the diversity of extended-spectrum beta-lactamases in Brazil, 18 strains from different species of the family Enterobacteriaceae exhibiting a positive double-disk synergy test were collected by a clinical laboratory from several hospitals in Rio de Janeiro, Brazil, in 1996 and 1997. Four strains (Proteus mirabilis, Enterobacter cloacae, Enterobacter aerogenes, and Citrobacter amalonaticus) hybridized with a 550-bp CTX-M probe. The P. mirabilis strain produced a CTX-M-2 enzyme. The E. cloacae, E. aerogenes, and C. amalonaticus isolates harbored a bla gene which was identified by cloning and sequencing as a bla(CTX-M) gene. E. coli HB101 transconjugants and the E. coli DH5alpha transformant harboring a recombinant plasmid produced a CTX-M beta-lactamase with an isoelectric point of 7.6 conferring a resistance phenotype characterized by a higher level of resistance to cefotaxime than to ceftazidime, as observed with the other CTX-M enzymes. The deduced protein sequence showed a novel Ambler class A CTX-M enzyme, named CTX-M-8, which had 83 to 88% identity with the previously described CTX-M enzymes. The phylogenic study of the CTX-M family including CTX-M-8 revealed four CTX-M types, CTX-M-8 being the first member of a new phylum of CTX-M enzymes. The evolutionary distances between the four types of CTX-M were large, suggesting that the four clusters branched off early from a distant unknown enzyme and that intermediate enzymes probably existed.
- Published
- 2000
- Full Text
- View/download PDF
21. Adhesive properties and antibiotic resistance of Klebsiella, Enterobacter, and Serratia clinical isolates involved in nosocomial infections.
- Author
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Livrelli V, De Champs C, Di Martino P, Darfeuille-Michaud A, Forestier C, and Joly B
- Subjects
- Adhesins, Bacterial analysis, Adult, Aged, Aged, 80 and over, Cell Line, Child, Preschool, Cross Infection epidemiology, Disease Reservoirs, Drug Resistance, Microbial, Enterobacteriaceae ultrastructure, Enterobacteriaceae Infections epidemiology, Female, Fimbriae, Bacterial, France epidemiology, Humans, Hydroxamic Acids analysis, Infant, Infant, Newborn, Intestines microbiology, Klebsiella Infections epidemiology, Klebsiella Infections microbiology, Male, Middle Aged, Serratia Infections epidemiology, Serratia Infections microbiology, Bacterial Adhesion, Cross Infection microbiology, Enterobacteriaceae drug effects, Enterobacteriaceae pathogenicity, Enterobacteriaceae Infections microbiology
- Abstract
Intestinal colonization by Klebsiella, Enterobacter, and Serratia (KES) strains is a crucial step in the development of nosocomial infections. We studied the adhesive properties, antibiotic resistance, and involvement in colonization or infection of 103 KES clinical isolates: 30 Klebsiella pneumoniae (29%), 16 Klebsiella oxytoca (15%), 30 Enterobacter aerogenes (29%), 14 Enterobacter cloacae (14%), and 13 Serratia sp. (13%) isolates. Half of them were resistant to several antimicrobial agents, including aminoglycosides and beta-lactam antibiotics. A total of 27 of 30 K. pneumoniae isolates (90%) adhered to the human cell line Intestine-407 (Int-407), while none of the K. oxytoca or E. aerogenes isolates and only 2 of the E. cloacae isolates adhered. Three adhesive patterns were observed for K. pneumoniae: an aggregative adhesion in 57% of the isolates, a diffuse adhesion in only one isolate, and a new pattern, localized adhesion, in 30% of the isolates. While most of the sensitive strains adhered with the aggregative phenotype, the localized pattern was associated with resistant K. pneumoniae isolates producing the CAZ-5 beta-lactamase. Furthermore, 45% of such localized-adhesion isolates were involved in severe infections. The distributions of type 1 and type 3 fimbriae, enteroaggregative E. coli, and cf29, pap, and afa/Dr adhesin-encoding genes were determined by using specific DNA probes. No relationship was found between the adhesive pattern and the production of specific fimbriae, suggesting that several unrecognized adhesive factors are involved. Our study indicates that special adhesive properties associated with resistance to antimicrobial agents could account for the pathogenicity of certain nosocomial strains.
- Published
- 1996
- Full Text
- View/download PDF
22. Clinical and bacteriological study of nosocomial infections due to Enterobacter aerogenes resistant to imipenem.
- Author
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de Champs C, Henquell C, Guelon D, Sirot D, Gazuy N, and Sirot J
- Subjects
- Bacterial Outer Membrane Proteins analysis, Bacterial Typing Techniques, Cephalosporinase metabolism, Cilastatin pharmacology, Cilastatin therapeutic use, Cilastatin, Imipenem Drug Combination, Cross Infection drug therapy, Drug Combinations, Drug Resistance, Microbial genetics, Enterobacteriaceae enzymology, Enterobacteriaceae genetics, Enterobacteriaceae Infections drug therapy, Humans, Imipenem therapeutic use, Klebsiella pneumoniae drug effects, Microbial Sensitivity Tests, Plasmids, beta-Lactamases metabolism, Cross Infection microbiology, Enterobacteriaceae drug effects, Enterobacteriaceae Infections microbiology, Imipenem pharmacology
- Abstract
Enterobacter aerogenes strains resistant to imipenem were isolated in 10 patients, 7 of whom had received imipenem-cilastatin. The strains were differentiated by biotype, antibiotype, and plasmid content. All of the strains overproduced a chromosomal cephalosporinase and lost a major outer membrane protein with a size of about 40 kDa. In 5 of the 10 patients, E. aerogenes strains resistant to extended-spectrum cephalosporin were isolated during the same stay. In three patients, the similarity between the imipenem-susceptible and -resistant strains suggests the occurrence of mutation and reversion in vivo. The combination imipenem-cilastatin has been critically important for use with multiresistant strains of Enterobacter spp., but its use increases the risk of selection of imipenem-resistant strains.
- Published
- 1993
- Full Text
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23. Concomitant dissemination of three extended-spectrum beta-lactamases among different Enterobacteriaceae isolated in a French hospital.
- Author
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de Champs C, Sirot D, Chanal C, Poupart MC, Dumas MP, and Sirot J
- Subjects
- DNA, Bacterial analysis, DNA, Bacterial isolation & purification, Enterobacter drug effects, Enterobacter genetics, Enterobacteriaceae drug effects, Enterobacteriaceae Infections microbiology, Escherichia coli enzymology, Escherichia coli genetics, France, Humans, Klebsiella pneumoniae drug effects, Klebsiella pneumoniae genetics, Microbial Sensitivity Tests, Nucleic Acid Hybridization, Transfection, beta-Lactamases genetics, Cross Infection microbiology, Enterobacteriaceae enzymology, beta-Lactamases isolation & purification
- Abstract
From January 1988 to August 1989, 267 non-repetitive strains of Enterobacteriaceae producing extended-spectrum beta-lactamases (ESBla) derived from TEM (CTX-1/TEM-3, CAZ-6) or SHV (CAZ-5) were isolated from 219 colonized or infected patients. ESBlas were characterized by analytical isoelectric focusing. Biotypes, resistance phenotypes and plasmid patterns were determined in order to differentiate the isolates in each species. Among the 116 CTX-1-producing Enterobacteriaceae, 48 strains were differentiated: 27 from 74 Klebsiella pneumoniae isolates, seven from 22 Enterobacter aerogenes isolates, and 14 from a combined total of seven K. oxytoca, five Serratia marcescens, six Escherichia coli, 1 Enterobacter cloacae and 1 Citrobacter freundii. CAZ-5 has been isolated since January 1988 in 16 different strains among 101 K. pneumoniae isolates. CAZ-6 was first identified in K. pneumoniae (January 1988). Among the 48 Enterobacteriaceae producing CAZ-6, 12 strains were differentiated: four from 39 E. aerogenes isolates, three from four K. pneumoniae, and five from a combined total of two S. marcescens, two E. coli and one E. cloacae. During this outbreak, CTX-1 was found to be encoded by 85 kb (Inc 7/M) or greater than or equal to 150 kb (Inc 6/C) plasmids. CAZ-6 was always encoded by an 85 kb (Inc 7/M) plasmid and CAZ-5 by a greater than 150 kb plasmid. These results show that strain epidemics and plasmid dissemination occurred mainly in K. pneumoniae and E. aerogenes for CTX-1, in E. aerogenes for CAZ-6, and in K. pneumoniae for CAZ-5. They also suggest that the bla(tem) gene (CTX-1) has spread between different plasmids present in the same ecosystem.
- Published
- 1991
- Full Text
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24. Prospective survey of colonization and infection caused by expanded-spectrum-beta-lactamase-producing members of the family Enterobacteriaceae in an intensive care unit.
- Author
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De Champs C, Sauvant MP, Chanal C, Sirot D, Gazuy N, Malhuret R, Baguet JC, and Sirot J
- Subjects
- Acute Kidney Injury complications, Adult, Aged, Female, Humans, Male, Middle Aged, Prospective Studies, Carrier State microbiology, Enterobacteriaceae enzymology, Enterobacteriaceae Infections microbiology, Intensive Care Units, beta-Lactamases biosynthesis
- Abstract
The occurrence of expanded-spectrum-beta-lactamase-producing strains was prospectively studied in 56 patients in an intensive care unit. Ten patients were infected or colonized; some of these patients had asymptomatic intestinal colonization. Four different expanded-spectrum beta-lactamases were identified and used as epidemiological markers to survey nosocomial infections.
- Published
- 1989
- Full Text
- View/download PDF
25. Selective digestive decontamination by erythromycin-base in a polyvalent intensive care unit.
- Author
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de Champs, C L, Guelon, D P, Garnier, R M, Poupart, M C, Mansoor, O Y, Dissait, F L, and Sirot, J L
- Subjects
DIGESTIVE organ microbiology ,CROSS infection prevention ,CARRIER state (Communicable diseases) ,CRITICAL care medicine ,CROSS infection ,DRUG resistance in microorganisms ,ENTEROBACTERIACEAE ,ERYTHROMYCIN ,GASTRIC juice ,HYDROLASES ,INTENSIVE care units ,LONGITUDINAL method ,RECTUM ,ENTEROBACTERIACEAE diseases ,PREVENTION - Abstract
Objective: To study the effect of selective digestive tract decontamination by erythromycin-base on the incidence of carriage and infection with MR Enterobacteriaceae producing an extended spectrum beta-lactamase (ESB).Design: After a 10-week prospective survey to ascertain the baseline incidence in two bays (1 and 3) of the same ICU, bay 1 was compared with bay 3 during a further survey of 6 months. The patients in bay 1 received erythromycin-base.Setting: Two non-contiguous bays, 1 and 3, of 4 beds, in the same polyvalent ICU of a university hospital.Patient: Consecutive patients with unit stay longer than 2 days; 34 patients were included during the control period, 43 in bay 1 (decontamination) and 46 in bay 3 (control) during the trial period.Intervention: Erythromycin-base, 1 g t.i.d. in powder form administered by gastric tube to patients in bay 1 from admission to discharge.Measurements and Results: Digestive tract carriage was monitored by cultures of gastric and rectal swab specimens, sampled twice a week. Enterobacteriaceae were isolated on Drigalski agar with incorporated ceftazidime (4 mg/l). In bay 1 there was a decrease in ESB producing Enterobacteriaceae (23% vs 10%, p = 0.0004) from rectal swab, especially in K. pneumoniae (15% vs 2%, p = 10(-5)), during the decontamination period in comparison to the control period. During the trial period the only differences observed between bays 1 and 3 were in the gastric samples: K. pneumoniae were less often isolated in bay 1 than in bay 3 (0% vs 3%, p = 0.03). Intestinal carriage with multiresistant Enterobacteriaceae occurred in 28% patients in bay 1 and 30% patients in bay 3 during the trial period (p = 0.79). Erythromycin-base did not delay the carriage by patients in bay 1 (log rank test p = 0.42).Conclusion: Erythromycin-base was not effective in preventing digestive tract carriage due to Enterobacteriaceae resistant to third generation cephalosporin by production of chromosomal cephalosporinase. The decrease in isolates containing K. pneumoniae in bay 1 cannot be definitively attributed to erythromycin-base, since the number of this species in bay 3 was low. [ABSTRACT FROM AUTHOR]- Published
- 1993
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