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Confined to a small region in central Angola, the giant sable antelope ( Hippotragus niger variani) experienced a dramatic decline in numbers and is currently one of the most endangered African mammals. In spite of its iconic status, conservation efforts have been hindered by unsustainable hunting and lack of adequate tools to promote its recovery. In this work, we developed a set of 57 microsatellites specific for the giant sable, which revealed depleted levels of genetic diversity and an allele frequency spectrum consistent with a recent evolutionary history characterized by severe population crashes. In contrast, the high number of private alleles exhibited by other H. niger populations from Zimbabwe and Tanzania may suggest the occurrence of reduced levels of gene flow among sable populations. Our microsatellite panel was successfully tested on the roan antelope, Hippotragus equinus, and will prove highly applicable on the characterization of different Hippotragus populations, but in particular for the conservation of the Angolan giant sable antelope. [ABSTRACT FROM AUTHOR]

The giant sable antelope ( Hippotragus niger variani) is a critically endangered subspecies with a range restricted to a small area in the Angolan plateau. It is known to display geophagic behaviour, eating the soil of some Macrotermes termitaria. The aim of this study was to understand the importance of this behaviour for the giant sable and other ungulates sharing its range. We identified termite mounds used for geophagy based on local information confirmed by self-triggering cameras. We collected and analysed soil samples of seven termitaria consumed by ungulates, the adjacent topsoil 50 m away from each, and seven control nonconsumed termitaria. Consumed termite mounds were richer in minerals than control mounds, and both were richer than the surrounding topsoil. Sodium levels showed the greatest contrasts and were about 20 times more abundant in consumed termitaria than in controls. The amount of sodium in background soil was extremely low (9.3 ppm), suggesting that this mineral is a limiting nutrient in the range of the giant sable. These results indicate that the observed geophagic habits may be driven by a need to compensate for a sodium deficiency. This situation should be considered in the planning of the species' conservation. [ABSTRACT FROM AUTHOR]

Genome-wide assessment of genetic diversity has the potential to increase the ability to understand admixture, inbreeding, kinship and erosion of genetic diversity affecting both captive (ex situ) and wild (in situ) populations of threatened species. The sable antelope (Hippotragus niger), native to the savannah woodlands of sub-Saharan Africa, is a species that is being managed ex situ in both public (zoo) and private (ranch) collections in the United States. Our objective was to develop whole genome sequence resources that will serve as a foundation for characterizing the genetic status of ex situ populations of sable antelope relative to populations in the wild. Here we report the draft genome assembly of a male sable antelope, a member of the subfamily Hippotraginae (Bovidae, Cetartiodactyla, Mammalia). The 2.596 Gb draft genome consists of 136,528 contigs with an N50 of 45.5 Kbp and 16,927 scaffolds with an N50 of 4.59 Mbp. De novo annotation identified 18,828 protein-coding genes and repetitive sequences encompassing 46.97% of the genome. The discovery of single nucleotide variants (SNVs) was assisted by the re-sequencing of seven additional captive and wild individuals, representing two different subspecies, leading to the identification of 1,987,710 bi-allelic SNVs. Assembly of the mitochondrial genomes revealed that each individual was defined by a unique haplotype and these data were used to infer the mitochondrial gene tree relative to other hippotragine species. The sable antelope genome constitutes a valuable resource for assessing genome-wide diversity and evolutionary potential, thereby facilitating long-term conservation of this charismatic species. [ABSTRACT FROM AUTHOR]