1. Comparative Phenotypic and Genotypic Analysis of Edwardsiella Isolates from Different Hosts and Geographic Origins, with Emphasis on Isolates Formerly Classified as E. tarda, and Evaluation of Diagnostic Methods.
- Author
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Reichley SR, Ware C, Steadman J, Gaunt PS, García JC, LaFrentz BR, Thachil A, Waldbieser GC, Stine CB, Buján N, Arias CR, Loch T, Welch TJ, Cipriano RC, Greenway TE, Khoo LH, Wise DJ, Lawrence ML, and Griffin MJ
- Subjects
- Animals, Bacterial Proteins genetics, DNA Gyrase genetics, Edwardsiella tarda chemistry, Edwardsiella tarda genetics, Enterobacteriaceae Infections diagnosis, Enterobacteriaceae Infections microbiology, Fish Diseases diagnosis, Multiplex Polymerase Chain Reaction methods, Phylogeography, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA methods, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Superoxide Dismutase genetics, Edwardsiella tarda classification, Edwardsiella tarda isolation & purification, Enterobacteriaceae Infections veterinary, Fish Diseases microbiology, Genotype, Phenotype
- Abstract
Edwardsiella spp. are responsible for significant losses in important wild and cultured fish species worldwide. Recent phylogenomic investigations have determined that bacteria historically classified as Edwardsiella tarda actually represent three genetically distinct yet phenotypically ambiguous taxa with various degrees of pathogenicity in different hosts. Previous recognition of these taxa was hampered by the lack of a distinguishing phenotypic character. Commercial test panel configurations are relatively constant over time, and as new species are defined, appropriate discriminatory tests may not be present in current test panel arrangements. While phenobiochemical tests fail to discriminate between these taxa, data presented here revealed discriminatory peaks for each Edwardsiella species using matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) methodology, suggesting that MALDI-TOF can offer rapid, reliable identification in line with current systematic classifications. Furthermore, a multiplex PCR assay was validated for rapid molecular differentiation of the Edwardsiella spp. affecting fish. Moreover, the limitations of relying on partial 16S rRNA for discrimination of Edwardsiella spp. and advantages of employing alternative single-copy genes gyrB and sodB for molecular identification and classification of Edwardsiella were demonstrated. Last, sodB sequencing confirmed that isolates previously defined as typical motile fish-pathogenic E. tarda are synonymous with Edwardsiella piscicida , while atypical nonmotile fish-pathogenic E. tarda isolates are equivalent to Edwardsiella anguillarum Fish-nonpathogenic E. tarda isolates are consistent with E. tarda as it is currently defined. These analyses help deconvolute the scientific literature regarding these organisms and provide baseline information to better facilitate proper taxonomic assignment and minimize erroneous identifications of Edwardsiella isolates in clinical and research settings., (Copyright © 2017 American Society for Microbiology.)
- Published
- 2017
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