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Despite desert ecosystem being crucial to our understanding of natural geography, species evolution and global climate change, there is limited information on the dynamics of their composition and the diversity of endophytic fungi communities driven by plant identity and organ differentiation. Here, an extensive investigation of endophytic fungal microbiome in root, stem, and leaf organs associated with five xerophyte shrubs in an extremely arid desert, Northwest China, were examined. The fungal community dominated by Dothideomycetes and Pleosporales. Shrub species strongly drive the niche-based processes of endophytic fungi across the root, stem and leaf compartments. The diversity and composition of endophytic fungi in stem showed higher variability among plant species than leaf and root. The fungal communities in root libraries were more diverse and exhibited a remarkable differentiation of community composition. We further demonstrated the significant host preferences and tissue specificity of desert endophytic fungi, and unique specific taxa were also observed. The co-occurrence network revealed the coexistence of fungal endophytes in arid desert, and the root fungal network harbored the highest interspecies connectivity. Members of Pleosporales were the most common keystone species in the root fungal network. This is the first report of mycobiota in both plant species and organ differentiation in an extremely arid desert ecosystem.

Investigations into the edaphic associations, host affiliations and soil depth of dark septate endophytes (DSE) in arid desert environments can help explain their spatial distribution and the response mechanisms in desert ecosystems. Soils were sampled to a depth of 50 cm in the rhizospheres of Psammochloa villosa, Hedysarum laeve and Artemisia ordosica in the Mu Us sandland of northwest China in July 2015. The plant species and soil depth significantly influenced the distribution and colonization of DSE. Hyphal and total root colonization were significantly higher under P. villosa than the others in the 0–20 cm layer. The maximum colonization of P. villosa and H. laeve occurred in the 10–20 cm and 20–30 cm soil layers, respectively, while 30–40 cm soil layer under A. ordosica. Of twelve DSE species isolated from the roots of these plants, Phoma radicina and Bipolaris zeae were reported in desert ecosystems for the first time. Hyphal colonization was significantly and positively correlated with soil total nitrogen (TN) and significantly and negatively correlated with the soil carbon/nitrogen (C/N) ratio. Microsclerotial colonization was significantly and positively correlated with soil organic carbon (SOC), and total colonization was significantly and positively correlated with soil TN and total phosphorus (TP) and significantly and negatively correlated with soil C/N. Variation of DSE colonization was mostly attributed to effects of plant species. We concluded that the species composition and colonization of the DSE fungi were influenced by the plant species, soil depth and soil nutrient availability in this desert ecosystem. This research provides a basis for further understanding the ecological adaptability of DSE and their roles in promoting vegetation restoration and reducing desertification in arid ecosystems.

Despite the evident importance of arbuscular mycorrhizal fungi (AMF) associated with the root system of plants inhabiting desert regions, limit is known about the distribution and activity of AMF in desert ecosystems. Accordingly, AMF diversity, community composition and glomalin were investigated in the northern desert of China. Soil samples from 0 to 30 cm in depth over seven plots were collected under the canopy of Hedysarum scoparium in July of 2015 and 2016. A total of 51 molecular operational taxonomic units (OTUs) were identified by MiSeq sequencing based on small subunit (SSU) ribosomal RNA genes, and Diversispora celata and Diversispora trimurales were discovered for the first time in a desert ecosystem in China. The abundant genera included Glomus (56.4%), Diversispora (25.1%), Claroideoglomus (6.0%), Funneliformis (6.1%) and Paraglomus (5.5%). Archaeospora and Scutellospora sequences represented

With the intensification of desertification in northwest China, drought has become a serious environmental problem restricting plant growth and ecological restoration. Recently, dark septate endophytes (DSEs) have attracted more attention because of their ability to improve plants’ resistance to drought. Here, we investigated DSE colonization and species diversity in roots of Lycium ruthenicum collected from Anxi and Minqin, in northwest China, during July, September, and December 2019. This study aimed to evaluate the influence of seasonality and sampling sites on DSEs. In different seasons, DSE colonization varied with the phenology of L. ruthenicum. At different sites, DSE colonization significantly differed. Four isolates were reported in desert ecosystems for the first time. The results showed microsclerotial colonization was directly affected by changing seasons, while hyphal colonization and species diversity were directly affected by sampling sites. The soil organic carbon, pH, alkaline phosphatase, and alkali-hydrolyzable nitrogen were the main predictors of DSE colonization and species diversity. We conclude that DSE colonization and diversity showed significant spatial–temporal heterogeneity and were closely related to soil factors. This research provides a basis for the further understanding of the ecological functions of DSEs and their application potential for vegetative restoration and agricultural cultivation in drylands.

Background: Desert shrubs represent high productivity and play essential roles in maintaining the biodiversity and stability of ecosystem functioning in arid desert ecosystems. These xerophytic plants provide specific biotic and abiotic conditions for the resident specialist microorganisms. However, a robust understanding of the structural composition of the fungal microbiome associated with desert plants and especially the relationship between above- and belowground communities is currently lacking. In this study, we examined the endophytic fungal communities associated with the root, stem, and leaf tissues of five desert shrubs using Illumina MiSeq sequencing of internal transcribed spacer 2 (ITS2) sequences.Results: A total of 337 operational taxonomic units (OTUs) of endophytic fungi were identified at a 97% sequence similarity level. Pleosporales were dominant and played an irreplaceable role as keystone species in maintaining the connectivity and complexity of the fungal networks. Desert shrub identity significantly affected the community composition of the endophytic fungi in different tissues. Compared with the fungi in the aboveground tissues, root-associated fungi represented the most abundant reservoir of biodiversity in the desert habitat and displayed significantly high tissue specificity. Interestingly, the aboveground stems and leaves showed higher taxonomic overlap with underground root tissues than with each other. The root fungal network revealed the highest connectivity, and the interspecies relationships between desert fungal OTUs revealed a high percentage of co-presence rather than mutual exclusion. In addition, members of Hypocreales played a central role in connecting the above- and belowground fungal networks.Conclusions: This study represents the first example of research revealing plant-fungus endophytic associations in an extremely arid desert ecosystem with the simultaneous consideration and comparison of above- and belowground niches. Understanding the complex host-microbe interactions associated with desert plants could provide a basis for the exploitation of plant-fungus associations in the manipulation of the shrub microbiome for ecological restoration purposes.

Relict plants, remnants of Tertiary flora, survived geochronological ages, however, studies intended to ascertain the background of their fungal symbionts are limited. Different from many other relict plants, Gymnocarpos przewalskii Maxim. inhabits arid deserts region, mainly distributed in northwest China. In order to inquire the arbuscular mycorrhizal fungi (AMF) associated to G. przewalskii and their ecological significance in desert ecosystems, the seasonal dynamics of AMF and glomalin were surveyed in Anxi and Minqin in Gansu Province, northwest China. Soil samples in the rhizosphere of G. przewalskii were collected in July, September and December 2019, respectively. In total, 41 and 46 AMF species were identified via morphological techniques in Anxi and Minqin, respectively. Meanwhile, high throughput sequencing (HTS) data diagnosed 29 and 61 AMF OTUs in Anxi and Minqin, respectively. Glomus was the dominant genus in different seasons and locations in both morphological investigation and HTS data. AMF colonization (44.67–75.30%) and spore densities (19–248 per 20 g soil) varied sharply among seasons and locations. AMF colonization and spore densities showed significant positive correlations to most edaphic factors, except soil carbon: nitrogen ratio. Glomalin-related soil protein (GRSP) dramatically contributed to local soil carbon pool (51.54% in Anxi, 40.37% in Minqin), and the GRSP contents in soil were significantly affected by soil properties, season, and location. Random forest analysis indicated that soil humidity and total GRSP were the main factors shaping AMF communities. Our results showed that AMF colonization, spore density, and species diversity were higher and AMF community composition was less variable in Minqin where the soil nutrition levels were lower, which emphasized the necessity of AMF symbiosis for plants in harsh environments. The present research demonstrated the seasonal dynamics of soil AMF communities and glomalin and determined influential environmental factors in desert ecosystems. Our findings provide novel views on desert soil resource management and relict plant protection from an aspect of plant-AMF symbiosis.

The vertical diversity and distribution of arbuscular mycorrhizal (AM) fungi were investigated in the Mu Us Desert, northwest China. Soils were sampled to 50 cm in depth in the rhizospheres of Hedy...

Dark septate endophytes (DSE) are diverse facultative biotrophic ascomycetes that ubiquitously colonise plant roots and may facilitate plant growth and productivity. However, the relationship between DSE resources and medicinal plants is still unclear. Here, we investigated DSE colonisation and species composition associated with roots of 25 medicinal plants collected from Anguo Medicine Planting Site in the farmland habitat, northern China in May 2017 using morphological characteristics and ITS sequencing. Typical DSE colonisation structures were observed in the roots of 25 medicinal plants. Total DSE colonisation was in the range of 2.22–100% and was significantly and positively correlated with soil organic matter, urease, and phosphatase. Host species purely explained 80.8%, 74.0%, and 79.0% of the observed variation in hyphal, microsclerotial, and total DSE colonisation, respectively. Of the 14 DSE taxa isolated from all 25 medicinal plant roots, six species were reported here for the first time in medicinal plants. Nonmetric multidimensional scaling analysis revealed that DSE colonisation and species composition significantly differed between different plant species. The DSE colonisation and species composition were predominately affected by plant identity than by soil factors. We conclude that the dynamics of DSE in the roots of medicinal plants exhibited a highly correlated plant species pattern, which further correlated with soil nutrient availability and enzymatic activity. This research provides a basis for further understanding of the ecological functions of DSE and their roles in the promotion of yield and quality of medicinal plants in the farmland ecosystems.

Fungal endophytes can improve plant tolerance to abiotic stress, however, the role of these plant–fungal interactions in desert species ecology and their management implications remain unclear. This study aimed to assess the effects of dark septate endophytes (DSE) on the performance of Artemisia ordosica and associated soil factors and microbial functional group abundance under salt stress. We investigated the effects of three DSE (Alternaria chlamydosporigena [AC], Paraphoma chrysanthemicola [PC] and Bipolaris sorokiniana [BS]) isolated from desert habitats on plant morphology, physiology and rhizosphere soil microhabitat of A. ordosica seedlings under different NaCl concentrations (0, 1, 2, 3 g NaCl/kg soil) in a growth chamber. The three DSE strains could colonize the roots of A. ordosica, and the symbiotic response with host plants depended on DSE species and NaCl concentration. The greatest benefits associated with DSE occurred under 1 g NaCl/kg soil. Specifically, AC promoted the accumulation of total biomass and enhanced superoxide dismutase (SOD) activity; PC promoted the accumulation of root biomass and increased indoleacetic acid (IAA) contents; and BS enhanced SOD activity and glutathione (GSH) and IAA contents. DSE reduced the root Na+ content. Interestingly, BS promoted gram-positive (G +) under 1 g NaCl/kg soil and the abundance of arbuscular mycorrhizal (AM) fungi under 3 g NaCl/kg soil. PC positively affected fungi, AM fungi, gram-negative (G −) bacteria and actinomycetes under 2 g NaCl/kg soil, and increased AM fungi and G – bacteria under 3 g NaCl/kg soil, while AC increased the abundance of all examined microbes under 3 g NaCl/kg soil. Structural equation modeling (SEM) demonstrated that DSE inoculation significantly influenced the relationship between the growth of A. ordosica, soil factors and rhizospheric microbial functional groups under NaCl stress treatments. DSE enhanced the root development of host plants and altered the soil nutrient content and microbiota under different NaCl concentrations, possibly contributing to plant growth and ecological adaptability under saline environment. These results contribute to the understanding of ecological function of DSE inoculation in improving the adaptability of plants to salt stress and may be used to promote vegetation restoration in salinized desert areas.

Arbuscular mycorrhizal (AM) fungi may facilitate the revegetation of degraded ecosystems by decreasing abiotic and biotic stresses on pioneer plants. In addition to assessing the AM status of pioneer plants, monitoring the dynamics of an AM fungal community after revegetation can provide key information for the selection of plant-AM fungal combinations that adapt to the disturbed conditions to promote the establishment and growth of mycorrhizal-dependent pioneer plants. Accordingly, species composition, diversity, and spore density of the AM fungal community inhabiting the root zones of 12-year- and 30-year-old planted Caragana microphylla were determined in the desertified grassland in northern China. Moreover, the content of glomalin-related soil proteins (GRSP) was measured to assess AM fungal biomass. A total of 23 AM fungal species belonging to Acaulospora, Claroideoglomus, Dentiscutata, Funneliformis, Glomus, Rhizophagus, and Septoglomus, were identified. Soil phosphorus availability or organic-carbon content significantly affected AM fungal composition and diversity. However, edaphic properties can explain only approximately 30% of the variations in the AM fungal community. Spore density and GRSP content recorded at the 30-year revegetated dune were significantly higher than those at the 12-year revegetated dune. No significant differences in community composition and diversity of AM fungi were recorded at the dunes with different revegetation duration. This indicates that there might be a certain degree of host-specificity existing in the C. microphylla-AM fungal association. Both taxonomic and phylogenetic analyses should be performed in further research to obtain comprehensive information about the composition and dynamics of an AM fungal community during revegetation of the desertified grassland.

Spatial dynamics of DSE in the roots and rhizospheres of Hedysarum scoparium Fisch. et Mey. and soil factors were investigated at seven arid and semi-arid locations in northwest China in July 2015. Sampling sites were found to have a significant influence on the morphology, components, distribution, and infection of DSE in the roots of H. scoparium . Of nine DSE species isolated from H. scoparium roots, five are reported here for the first time from desert ecosystems. Hyphal infection in roots was positively correlated with soil urease and phosphatase activity. The presence of microsclerotia in roots was positively correlated with soil ammonium, and negatively correlated with soil organic matter and pH. We conclude that DSE infection is spatially predictable, and is influenced by nutrient availability and enzymatic activity. This research provides a basis for further understanding the ecological functions of DSE, and their roles in the promotion of vegetation restoration and in reducing erosion and desertification in arid ecosystems.

The soil microbial community and edaphic factors in the rhizosphere and bulk soils of Hedysarum scoparium were investigated at seven arid desert locations in northwest China in July 2016. Plant and edaphic factors had significant effects on the community composition and functional diversity of soil microbes. Bacteria (ranging from 2.57 to 4.23 nmol g−1) contributed the most to the microbial community composition, followed by actinomycetes, followed by fungi. Carbohydrates, polymers, and carboxylic acids were the main carbon sources for soil microorganisms. Principal component analysis showed that the carbon source catabolism of soil microorganisms was higher in the rhizosphere than in bulk soils. Spearman correlation analyses revealed that the content of Gram-negative bacteria was significantly negatively correlated with the amino acids and that the content of AM fungi was significantly positively correlated with the carbohydrates and amines. Soil organic carbon, pH, and ammoniacal-N were significant predictors of microbial community composition, whereas soil organic carbon, phosphatase activity, and soil moisture were closely correlated with microbial carbon catabolism. This study indicated that soil microbial community composition and functional diversity are influenced by plants, nutrient availability, and enzymatic activity in the arid desert and serve as useful indicators for evaluating the soil quality and function of the desert ecosystem based on their relationships with the microbial community and soil nutrient distribution.

Although the spatial patterns of soil microbial community composition are well studied, little is known about the main factors driving microbial distributions in desert ecosystems. Therefore, the objective of this study was to examine the comprehensive effect of spatial scale, plant cover and environmental properties on soil microorganisms under Ammopiptanthus mongolicus canopies at 5 desert locations in Northwest China. Sampling site significantly influenced the soil microbial community structure and metabolic functions under A. mongolicus canopies. Variation of soil microbial communities was mostly attributed to the simultaneous effects of plant cover and soil factors, while purely plant cover explained more variation in catabolic function than did the principle coordinates of neighbour matrices (PCNM) and soil factors. Soil microbial structure and catabolic metabolism were both significantly affected by phosphatase, glomalin and soil organic carbon. Bacterial and actinomycete phospholipid fatty acids (PLFAs) were positively correlated with ammonium nitrogen (N), and the utilization of carbohydrates, carboxylic acids and amino acids was positively correlated with Olsen phosphorus (P). Bacteria (1.43–4.79 nmol∙g−1) were most common in the microbial community, followed by actinomycetes (0.54–1.89 nmol∙g−1) and fungi (0.29–0.48 nmol∙g−1). Carbohydrates (12%–85%) and amino acids (5%–59%) were the main carbon sources for soil microbes. Soil microbial community abundance and catabolic utilization were significantly higher in the rhizosphere of A. mongolicus than in the bulk soils, and principal component analyses (PCAs) significantly separated the rhizospheric soil microbes from those of infertile bulk soils. The results of this study support the conclusion that soil microbial composition and catabolic functional diversity in desert soils are spatially predictable and determined more by specific soil properties and plant cover than by large-scale distance. This research provides a basis for evaluating the management of soil resources and microbial function in desert environments.

Arbuscular mycorrhiza (AM) fungi are the most common underground symbiosis. They can form vesicles and arbuscules in the roots of about 80% of plant species. In this paper, using the arbuscular mycorrhiza’s colonization as an evaluating indicator in combination with other experimental indicators, we composed a system of evaluating various indices to analyze desert soil conditions. A fuzzy optimization system model was introduced to analyze the experimental results. The results showed that the soil quality was Yulin > Ecology Station > Yanchi > Shapotou > Dingbian. ‘μi’, an indicator of soil quality, was the greatest in the topmost layer of soil, in the 0–10 cm soil, at the sampling sites Yulin, Ecology Station, Yanchi and Dingbian. However, at Shapotou the maximum value of μi was found in the 10–20 cm soil layer. The weight value of the AM fungal index ranged from 37% to 95% at different sites.

The aim of this study was to determine the spatial distribution and trophic diversity of free-living soil nematode populations in the most extreme xeric period, along a temperature gradient from the northern Negev Desert toward its southern edge, with mean annual temperature of 20–23°C and mean annual rainfall of 150–42 mm, respectively. Seventeen nematode taxa were identified, with bacterial feeding found to be dominant, with 52%, 24% and 12% at three stations, respectively. We found that when environmental temperatures reached high values, the influence of soil moisture and organic matter on the nematode population minimized, temperature being one of the factors determining community composition and structure.

The temporal and spatial dynamics of vesicular–arbuscular mycorrhizal (VAM) fungi were investigated in a desert ecosystem. Soil samples under the canopy of Zygophyllum dumosum were collected monthly between November 1999 and October 2000 from 0–10 and 10–20 cm depths. VAM fungal colonization and spore density were used to compare the responses of VAM fungi to soil conditions. The mean percent colonization and spore density of VAM fungi reached maximal values in November 1999 and September 2000. Soil moisture was positively correlated with colonization of VAM structure groups. Vesicular and arbuscular colonization were positively correlated with soil organic matter and total soluble N. Spore density was also positively correlated with total soluble N. Our results suggest that spore density and the extent of vesicular and arbuscular colonization are useful indicators for evaluating changes in desert soil ecosystems.