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The pelagic / anoxic hypolimnion population of Spirostomum teres was investigated as a part of the long-term ciliates’ monitoring (2003–2016) in an oligo- to mesotrophic monomictic hyposaline crater lake Alchichica (Puebla / Veracruz, Mexico), including an analysis of picoplankton (both heterotrophic, HPP and autotrophic, APP) and inorganic compounds of nitrogen (ammonium, nitrite, nitrate), phosphorus (dissolved reactive phosphorus, DRP) and silicon. Additionally, detailed studies of the ciliate vertical distribution and feeding activity measured upon fluorescently labelled APP (picocyanobacteria) were carried out. The results were compared with those from a neighbour freshwater crater lake La Preciosa and with a meromictic karstic lake La Cruz (Cuenca, Spain). The ciliate vertical distribution within the water column was very well defined: During the first decade, the benthic population was frequently found throughout a developing stratification of the lake. The established stratification of the lake turned the conditions favourable for the formation of an oxycline / hypolimnion population, typically, several meters below the deep chlorophyll maximum (formed basically by diatoms); the population preferred the layers without detectable dissolved oxygen. However, an observed gradient of light (PAR) could support both oxygenic and anoxygenic photosynthesis. Late stratification after deepening of the thermocline reduced the layers with S. teres population to a minimum apparently due to the drastic change in physicochemical conditions within a metalimnion, coupled with an oxycline, and limited to 1 to 2 meters; microstratification was found. Last years, the very bottom population disappeared or it was reduced and the late stratification S. teres peaks were smaller or did not appeared. Generally, S. teres oxycline / anoxic hypolimnion population was observed from June through November. Optimum picoplankton numbers in conditions that supported the ciliate growth were found: The ciliate was peaking at APP of 0.6 to 1 × 105 cells mL–1; the optimum of HPP was observed round 1.4 × 106 cells mL–1. S. teres was efficiently feeding upon picocyanobacteria in numbers of 105 cells mL–1 reaching the clearance rate of 2000 nL cell–1h–1, which represented in average 130 to 210 cells cell–1h–1 ingested. Feeding upon purple sulphur bacteria was observed but only during the end of the lake stable stratification when the ciliate population was already dropping. On the other hand, the volume specific clearance of S. teres upon picocyanobacteria (103 h–1) did not support the hypothesis that they could serve as a sole prey. Feeding upon eukaryote phytoplankton (chlorophytes Monoraphidium minutum, diatoms Cyclotella choc tawhatcheeana) could be of higher importance that previously supposed. Additionally, a use of ingested and retained photosynthetic prokaryotes is hypothesized.

The nitrogen (N) cycle is highly dependent on microbial processes. Distribution of these communities is one of the most important factors in the variation of the N cycling in warm‐monomictic lakes. However, the effects of the alternation of water stratification and mixing periods on the ecology of microbial communities involved in these processes are rarely studied in this type of aquatic ecosystem. We explored vertical and seasonal patterns of picoplankton and the genetic potential for ammonium oxidation (amoA gene for bacteria and archaea), denitrification (nirS and nirK), anammox (hzsA), and DNRA (nrfA) and their relationships with the main limnological variables in Lake Alchichica (Central Mexican Plateau) to provide insight into the distribution and importance of these planktonic communities in warm‐monomictic tropical lakes. Ten depths were sampled during late stratification (November 2015) and mixing (February 2016) periods, covering the epilimnion, metalimnion (oxycline), and hypolimnion layers in the first case. We showed that temperature and oxygen stratification shaped the distribution of picoplankton and functional N genes in this lake. These communities also varied in relation to nutrient availability and underwent temporal changes throughout the water column. The amoA genes, along with autotrophic picoplankton, were more abundant during the stratification, indicating that nitrification could be potentially more important during this period, mainly at the oxycline layer. Denitrifying genes showed strong variations during the stratification period, with highest gene copy numbers at the oxycline and hypolimnion layers. Anoxic conditions were characterised by a relative increase in the abundance of the nrfA gene with depth, which was positively correlated with NH₄ ⁺ concentration. On the other hand, the hzsA gene was not detected in any sample. Our findings highlight the importance of thermal stratification as one of the main factors influencing the genetic potential for N transformations within the water column in warm‐monomictic tropical lakes.

The response of planktonic (phytoplankton, ciliates, rotifers and crustaceans) and littoral (Ephemeroptera, Plecoptera, Trichoptera and Heteroptera: Nepomorpha) assemblages to chemical recovery was studied over a twelve-year period (1999–2011) in eight glacial lakes in the Bohemian Forest (central Europe). The region suffered from high atmospheric pollution from the 1950s to the late 1980s, but has since been recovering from acidification due to 86% and 44% decrease in sulphur and nitrogen deposition, respectively, during the 1990s–2000s. Despite the rapid improvement in water chemistry of all the eight studied lakes, only four have partly recovered so far (low-aluminium lakes), while the other four lakes still remain strongly acidic (high-aluminium lakes). Although biotic responses (especially in the low-Al lakes) showed important signs of recovery, such as reappearance of some indigenous or acid-sensitive species, decline in eurytopic acid-tolerant species and colonisation by vagile species, the assemblages of all the lakes still suffer from acid stress. Our results also indicate an increasing role of biotic interactions between colonisers and residents leading to the reconstruction of aquatic food webs in the low-Al lakes.

Microbes can modulate ecosystem function since they harbor a vast genetic potential for biogeochemical cycling. The spatial and temporal dynamics of this genetic diversity should be acknowledged to establish a link between ecosystem function and community structure. In this study, we analyzed the genetic diversity of bacterial phosphorus utilization genes in two microbial assemblages, microbialites and bacterioplankton of Lake Alchichica, a semiclosed (i.e., endorheic) system with marked seasonality that varies in nutrient conditions, temperature, dissolved oxygen, and water column stability. We focused on dissolved organic phosphorus (DOP) utilization gene dynamics during contrasting mixing and stratification periods. Bacterial alkaline phosphatases (phoX and phoD) and alkaline beta-propeller phytases (bpp) were surveyed. DOP utilization genes showed different dynamics evidenced by a marked change within an intra-annual period and a differential circadian pattern of expression. Although Lake Alchichica is a semiclosed system, this dynamic turnover of phylotypes (from lake circulation to stratification) points to a different potential of DOP utilization by the microbial communities within periods. DOP utilization gene dynamics was different among genetic markers and among assemblages (microbialite vs. bacterioplankton). As estimated by the system's P mass balance, P inputs and outputs were similar in magnitude (difference was

noxia, and ciliates might play a very important role in the plankton community budget there. We analysed changes in the composition and biomass of the ciliate assemblage and other microbial loop components throughout the oxycline just at the end of stratification in a warm-monomictic lake, Lake Alchichica, Mexico (four samplings: 2006-2008, 2010); the results were compared with those obtained from another lake from the region, La Preciosa, sampled in 2010. Bacteria, autotrophic picoplankton (APP) and flagellates were analysed using epifluorescence microscopy. Ciliates were evaluated either in DAPI stained samples (looking for pigmented organelles and/or ingested phototrophs) or in quantitative protargol stain (QPS) permanent preparations, where they were identified at the genus or species level. The end of the stratification period in Lake Alchichica was characterized by almost uniform heterotrophic picoplankton (HPP) numbers (106 cells mL-1) throughout the water column. Meanwhile, APP showed epilimnetic and/or metalimnetic maxima of 105 cells mL-1 followed by an order of magnitude drop in the hypolimnion. A very important peak (105 cells mL-1) of the autotrophic or mixotrophic flagellate Pyramimonas sp. was observed repeatedly above and within the oxycline of Lake Alchichica. Ciliate biomass maxima were found around the oxycline and in the above-bottom layer. The top of the oxycline was dominated by Euplotes spp. and Spirostomum teres fine- to coarse-filter feeders (feeding upon APP, nanodiatoms and algae). Raptorial haptorids (in particular, Phialina sp.) were the second most important group, generally occupying the layer below euplotids, followed by Holophrya and Prorodon facultative anaerobic prostomes. Sometimes, strictly anaerobic Caenomorpha sp. was found to be important in the anoxic hypolimnion. Minute picoplankton feeding species (both APP and heterotrophic bacteria feeders) were important throughout the water column: in the epilimnion, vorticellids (2006-2008) or scuticociliates (2010) dominated. Typically, the scuticociliate maximum was located in the oxycline and/or above the bottom. Some microaerophilic species were isolated; thus, their identification could be carried out. However, the apparent polymorphic ciliate life cycles were not described completely, and the species composition was only estimated: two dominant species (SC 1 – Cristigera-like and SC 2 – Cyclidim-like) covered nearly the total scuticociliate biomass. Strictly anaerobic scuticociliates were not isolated but observed in the deepest layers of the lake (bacteria symbiotic Isocyclidium globosum and Cristigera sp.). Significant statistical relation within the ciliate distribution and environmental variables was not confirmed due to unique species composition in the respective years. However, general trends in the distribution of ciliates on a species level were observed. Scuticociliates, including two important tentatively identified species, did not present unambiguous ecological position, and the study of their live cycle should be the next step in investigations.

The prokaryotic picoplankton (PPP) composition was studied in the tropical high-altitude saline Lake Alchichica, Mexico, using fluorescence in situ hybridization. Thetemporal dynamics of the PPP followed the annual hydrodynamics of this warm-monomictic lake. The abundance of both the autotrophic (APP) and heterotrophic(HPP) functional groups of PPP increased during the mixing period to reachmaximum values at the beginning of the stratification period, when the highesthybridization percentages for the domain Bacteria were also registered. The increasein PPP was most likely related to the availability of nutrients soon after the start ofthe mixing period. Throughout the rest of the stratification, APP and HPP decreasedsignificantly together with the hybridization percentages, mostly related to theexhaustion of nutrients in the mixing zone. In spite of being oligosaline, the prokar-yotic composition of Lake Alchichica was more typical of fresh than of saltier waterbodies. During the mixing period, the Pcy and Planctomycetes (PLA) formed the mainbacterioplankton fraction. Meanwhile throughout the stratification period PLA,Betaproteobacteria (BET) and Gammaproteobacteria (GAM) were the most abun-dant groups in the epilimnion and metalimnion. The domain Archaea (ARCH), BET,GAM, Paracoccus the principal denitrifier of the Alphaproteobacteria and sulphate-reducing bacteria were dominant in the oxycline and hypolimnion in associationwith dissolved oxygen depletion and the nutrient enrichment of the deeper strata.KEYWORDS: prokaryoplankton; warm-monomictic; oligosaline; tropical high-altitude

The recent interest in the plankton structures and dynamics in tropical and subtropical lakes has revealed important trends that set these lakes apart from temperate lakes, and one of the main differences is the enhanced importance of the microbial food web with respect to net plankton. Ciliates are a key component of subtropical and tropical microbial webs because of their role as dominant picoplankton grazers and their ability to channel picoplankton production to the uppermost trophic levels. Plankton ciliates have been found to play a crucial role in the survival of fish larvae in lakes that share several features with Lake Catemaco, a eutrophic tropical Mexican lake. Therefore, the plankton ciliate composition, abundance, and biomass of Lake Catemaco were studied to assess their role in the microbial food web. The data were obtained from surface and bottom water samples collected at eleven points during three surveys in 2011 and an additional survey in 2013, with the surveys covering the local climatic seasons. The most abundant components of the plankton ciliate assemblages were small prostomatids (Urotricha spp.), choreotrichs (Rimostrombidium spp.), cyclotrichs (Mesodinium and Askenasia), and scuticociliates (Cyclidium, Cinetochilum, Pleuronema, and Uronema). Other important ciliates in terms of abundance and/or biomass were haptorids (Actinobolina, Belonophrya, Monodinium, Paradileptus, and Laginophrya), Halteria, oligotrichs (Limnostrombidium and Pelagostrombidium), Linostomella, Bursaridium, Cyrtolophosis, and Litonotus. The ciliate abundance averaged 57 cells mL-1 and ranged from 14 to 113 cells mL-1. The mean ciliate biomass was 71 µg C L-1 and ranged from 10 to 202 µg C L-1. Differences were not detected in ciliate abundance or biomass between the sampling points or sampling depths (surface to bottom); however, significant differences were observed between seasons for both variables. Nano-sized filamentous cyanobacteria were the most abundant component of the plankton, and their abundance was assessed through epifluorescence microscopy counts. The autotrophic and heterotrophic picoplankton abundance was measured through epifluorescence, and their abundance and biomass were higher at the study site relative to other shallow freshwater ecosystems. The total ciliate biomass distribution patterns were similar to those of filamentous cyanobacteria and autotrophic or heterotrophic picoplankton, although the nanociliate biomasses peaked when the picoplankton and filamentous cyanobacteria were least abundant. The consequences of this increased importance of ciliates on the structure of the plankton at Lake Catemaco will be discussed along with the probable causes.

Seasonal changes in the structure of ciliate assemblages in eleven oligotrophic mountain lakes at different altitudes, covering a wide pH range from 4.9 to 6.9, were studied. Seven mountain lakes lay above the timberline (0vre NeÅdalsvatn and Stavsvatn, Norway; Lochnagar, Scotland; Starolesnianske pleso and Nizne Terianske pleso, Slovak Republic; Chuna ozero, Russia; Lago Paione Superiore, Italy) and four acidified lakes (Cerne, Certovo, Plesne and Prasilske jezero, Sumava Mountains, Czech Republic) in the mountain forest. Additionally, thr tropical high latitude Lago de Alchichica (Mexico) was analysed. Ciliate taxons were identified using the quantitative protargol staining approach, and feeding patterns were tentatively detected by using fluorescence microscopy methods. Nano- to microphytoplankton hunters and/ or mixotrophic ciliates prevailed in all acidic lakes. Numbers of ciliates were very low (seasonal lake mean below 200 cells/I) except in two Tatra lakes (to 21000 cells/I). Prostomes of the genera Urotricha, Holophrya and Prorodon dominated in most of the samples, both numerically as well as in biomass (seasonal lake mean from 13.6 to 100% and 4.6 to 99.7%, respectively), particularly in acidified water lakes (Starolesnianske, Certovo and Prasilske jezero). Among mixotrophs, oligotrichs of genera Pelagostrombidium and Limnostrombidium were the most prominent (up to 49.9 and 64.6%, respectively). The picoplankton-feeders (minute oligotrichs, peritrichs and scuticociliates) were found to be an important component even in the oligotrophic environment but this ecological type never dominated within the water column (up to 22.2 and 30.3 %, respectively). Major food sources of gymnostomes, prevailing only in Lochnagar (82.5 and 87.5 %, respectively; Mesodinium sp.), remained unclear; large Askenasia spp. were apparently mixotrophic. Using a cluster analysis, the lakes were grouped according to the total numbers of ciliates and contributions of distinct ecological groups with different feeding patterns. Within low acidic lakes, Lochnagar differed from all others. The rest of the lakes was divided into two subgroups: remote pristine lakes of the Northern transect (the Norwegian lakes and Chuna ozero), and the others, geographically affiliated to the south transect (Pyreneans, Alps, Tatra Mts.). Such a differentiation is in good agreement with the clustering based on chemical parameters reported for the lakes. No marked differences in the ciliate distribution were detected when the above timberline- and forest surrounded mountain lakes were compared.

International audience; Since ciliates rarely possess structures that easily fossilize, we are limited in our ability to use paleontological studies to reconstruct the early evolution of this large and ecologically important clade of protists. Tintinnids, a group of loricate (house-forming) planktonic ciliates, are the only group that has a significant fossil record. Putative tintinnid fossils from rocks older than Jurassic, however, possess few to no characters that can be found in extant ciliates; these fossils are best described as `incertae sedis eukaryotes'. Here, we review the Devonian fossil Nassacysta reticulata and propose that it is likewise another `incertae sedis eukaryote due to the lack of any unambiguous ciliate characters. Future tintinnid fossil descriptions would be most helpful if: (i) neutral terminology is used in the descriptions but ciliate-specific terminology in the interpretations; (ii) the current ciliate classification is used, although fossil data may expand or modify classifications based on modem forms; (iii) close collaboration with specialists studying extant ciliates is done; and (iv) editors include an expert of extant ciliates in the review process. (C) 2015 Elsevier B.V. All rights reserved.

Dissolved organic phosphorus utilization by different members of natural communities has been closely linked to microbial alkaline phosphatases whose affiliation and diversity is largely unknown. Here we assessed genetic diversity of bacterial alkaline phosphatases phoX and phoD, using highly diverse microbial consortia (microbialites and bacterioplankton) as study models. These microbial consortia are found in an oligo-mesotrophic soda lake with a particular geochemistry, exhibiting a low calcium concentration and a high Mg : Ca ratio relative to seawater. In spite of the relative low calcium concentration in the studied system, our results highlight the diversity of calcium-based metallophosphatases phoX and phoD-like in heterotrophic bacteria of microbialites and bacterioplankton, where phoX was the most abundant alkaline phosphatase found. phoX and phoD-like phylotypes were more numerous in microbialites than in bacterioplankton. A larger potential community for DOP utilization in microbialites was consistent with the TN : TP ratio, suggesting P limitation within these assemblages. A cross-system comparison indicated that diversity of phoX in Lake Alchichica was similar to that of other aquatic systems with a naturally contrasting ionic composition and trophic state, although no phylotypes were shared among systems.

The microbial loop of a naturally acidic bog lake, Grosse Fuchskuhle (Northeastern Germany), that had been artificially divided into 4 basins, was investigated. In the northeast (NE) and southwest (SW) basins, which differ strongly in chemistry and primary production, we conducted intensive studies of the main carbon fluxes through microbial food webs. In the less acidic, NE basin, much higher phytoplankton as well as bacterial biomass and production were found in parallel with negligible numbers of larger zooplankters. Weakly top-down controlled populations of protists were characterized by an exceptionally low numerical proportion of heterotrophic nanoflagellates (HNF) to ciliates (-1.5-3.5). The ciliate community was dominated by a scuticociliate, Cyclidium sp. (>95% of total ciliates), with an estimated grazing rate equal to 46-80% of heterotrophic bacterial production. In contrast, in the more humic, SW basin, both phyto- and bacterioplankton dynamics seemed to be top-down controlled by abundant populations of small fine-filter feeding cladocerans, Ceriodaphnia quadrangula and Diaphanosoma brachyurum. Consequently, ciliates disappeared from the food web structure of the SW basin, HNF dropped to negligible numbers and bacteria showed very uniform morphology, dominated by small cocci or short rods. Our investigations have shown that the division of the lake into separate compartments can lead to very different microbial food web structures with extreme species compositions.

Ciliate picoplanktivory was studied in two different freshwater systems with abundant auto- trophic picoplankton (APP): the eutrophic Rimov Reservoir (South Bohemia) during the late summer of 1993 and the oligo- to mesotrophic lake Piburger See (Tyrol) during May 1994. Picoplankton were sized by an image-analysis system and species-specific grazing rates of ciliates on bacteria and APP were determined using fluorescently labelled prey. According to the grazing data (as the mean uptake rate of picoplankton ind.~' h1), ciliates were split into three ecological groups in order of their decreas- ing picoplanktivory and increasing significance of nanophytoplankton in their diet, (i) Highly efficient fine suspension feeders consisting of vorticellids (4200 bacteria, 560 APP), four oligotrichs and Cyclidium sp. (380-1580 bacteria, 57-210 APP), with 2 u.m. (ii) Less efficient fine suspension feeders, coarse filter feeders and detritophages consisting of Cinetochilum margaritaceum, Pelagostrombidium fallax, Cyrtolophosis mucicola and Coleps spp. (60-173 bacteria, 2-27 APP), with 7-32% of individuals ingesting algae >2 n.m. (iii) Raptorial feeders consisting of four prostomatids belonging to the genera Urotricha and Balanion, with a negligible importance of picoplanktivory (8-61 bacteria, 0.2-14 APP). With the exception of one prostomatid. >58% of individuals ingested algae >2 (j.m. Grazing data for the six species from the first group were converted into organic carbon. Assuming a 35 % gross growth efficiency, the calculated potential doub- ling times were between 29 (Hatteria grandinella) and 43 h (an unidentified oligotrich), except for the mixotrophic Pelagohalteria viridis (118 h). The doubling times estimated from changes in ciliate abun- dance for four out of the six species were very close to the calculated values, indicating that this group of heterotrophic ciliates can meet all of its carbon requirements by feeding exclusively on picoplankton.

The most updated picture of the 16S rRNA phylogenetic tree of picocyanobacteria, including marine and freshwater strains, confirms the indication that Synechococcus 5.3 is not included in Synechococcus 5.1 but is its sister clade. The non-marine picocyanobacteria are considered as closely related to Cyanobium strains and proposed as monophyletic "Cyanobium-like" lineage. Nevertheless the relationships of these lineages to one another remain ambiguous. From this comes the need to enlarge the database with new sequences of isolated Synechococcus strains from a wider range of locations and environments to obtain a more realistic view of Synechococcus genus dispersal and evolution. In this study we aimed to resolve better the Synechococcus phylogenetic tree enlarging the sequence data set of non-marine picocyanobacteria including strains isolated from "extreme" lakes. Therefore we selected four high altitude athalassohaline maar crater-lakes in Mexico as a source for "non-marine halotolerant" Synechococcus, five glacial ultraoligotrophic North Patagonian lakes as extreme ecosystems, and six Italian lakes of glacial, volcanic and morenic origin, with different trophic conditions. Our objective was to create a new phylogenetic tree of non-marine Synechococcus upgraded adding 43 new sequences derived from isolated picocyanobacteria and to refine the taxonomic relationships between non-marine Synechococcus clades and Synechococcus 5.2 and 5.3. The new sequences fall into a number of both novel and previously described clades within the phylogenetic tree of 16S rRNA gene. The new cluster of Lake Nahuel Huapi (North Patagonia) forms a sister clade to the subalpine cluster II and the marine Synechococcus sub-cluster 5.2. Our finding of the novel clade of "Halotolerants" close to the marine sub-cluster 5.3 (Synechococcus RCC307) constitutes an important demonstration that euryhaline and marine strains affiliate closely. The intriguing results obtained shed new light on the importance of the non-marine halotolerants in the phylogenesis of picocyanobacteria.

Bacterial size and morphology are controlled by several factors including predation, viral lysis, UV radiation, and inorganic nutrients. We observed that bacterial biovolume from the hypolimnion of two oligotrophic lakes is larger than that of bacteria living in the layer from surface to 20 m, roughly corresponding to the euphotic/epilimnetic zone. One lake is located in the temperate region at low altitude (Lake Maggiore, Northern Italy) and the other in the tropical region at high altitude (Lake Alchichica, Mexico). The two lakes differ in oxygen, phosphorus and nitrogen concentrations and in the temperature of water column. If we consider the two lakes separately, we risk reducing the explanation of bacterial size variation in the water column to merely regional factors. Comparing the two lakes, can we gather a more general explanation for bacterial biovolume variation. The results showed that small bacteria dominate in the oxygenated, P-limited epilimnetic waters of both lakes, whereas larger cells are more typical of hypolimnetic waters where phosphorus and nitrogen are not limiting. Indeed, temperature per se cannot be invoked as an important factor explaining the different bacterial size in the two zones. Without excluding the top-down control mechanism of bacterial size, our data suggest that the average lower size of bacterial cells in the epilimnion of oligotrophic lakes is controlled by outcompetition over the larger cells at limiting nutrients.

To evaluate trophic relationships between ciliates and bacterioplankton during the stratification period in a lake, samples from three different layers [the upper part of the metalimnion (UM), the base of the metalimnion (BM) and the hypolimnion] were studied. The autotrophic picoplankton numbers, phylogenetic composition of heterotrophic picoplankton (HPP), and HPP composition in ciliates’ food vacuoles were analyzed. Additionally, in situ incubations in dialysis bags were performed at the same selected depths to assess potential changes in picoplankton composition related to ciliates’ feeding activity. Among the in situ HPP assemblage, no phylogenetic group dominated in the selected layers within the course of the study. The ciliate assemblage was dominated by scuticociliates, haptorids, and hypotrichs. Comparing ciliates’ food vacuole content and in situ HPP composition, a high preference for A lphaproteobacteria was found at all three depths. P lanctomycetes , and D elta - and G ammaproteobacteria were selected at BM and hypolimnion, respectively. However, selection of a given phylogenetic group in the time course of this study was observed only for A lphaproteobacteria in the UM. Similar trends were found in the incubations, but no relationship was found between the vacuole content of the ciliates and changes in HPP composition.

Phagotrophic protists are diverse and abundant in aquatic and terrestrial environments, making them fundamental to the transfer of matter/energy within their respective food webs. Recognising their grazing impact is essential to evaluate the role of protists in ecosystems, and this includes appreciating prey selectivity. Efforts have been made by groups and individuals to understand selective grazing behaviour by protists: many approaches and perspectives have been pursued, not all of which are compatible. This article, which is not a review, is the product of our discourse on this subject at the SAME 10 meeting. It is the work of individuals, assembled for their breadth of backgrounds, approaches, views, and expertise. Firstly, to communicate ideas and approaches, we develop a framework for selective feeding processes and suggest 6 steps: searching, contact, capture, processing, ingestion, digestion. We then separate study approaches into 2 categories: (1) those examining whole organisms at the community, population, and individual levels, and (2) those examining physiology and molecular attributes. Finally, we explore general problems associated with the field of protistan selective feeding (e.g. linking food selection into food webs and modeling). We do not present all views on any one topic, nor do we cover all topics; instead, we offer opinions and suggest avenues for continued study. Overall, this paper should stimulate further discourse on the subject and provide a roadmap for the future.

Ingestion of fluorescent particles by natural protozoan assemblage was studied in the Řimov Reservoir (Southern Bohemia) from April to October, 1987. Attached and free-living bacterial abundance, proportion of active bacteria, density of suspended particles and biomass of cladocerans were also monitored. Heterotrophic nanoflagellates (HNF; 5–12.8 102ml−1) were the dominant bacterial micrograzers during the spring period and consumed 3 to 9% of the total bacteria per day. After the spring phytoplankton bloom maximum densities of suspended particles and attached bacteria (up to 28% of the total counts) were found. Development of cladocerans in May sharply decreased the proportion of attached bacteria and kept them below 5% of the total counts. All the studied components of plankton except Cladocera decreased during the clearwater phase. The most significant drop was observed in the numbers of protozoans, and they were negligible for bacterial elimination. Bacterial losses during that time apparently were due to cladoceran grazing. During the summer period, ciliates (15–142 ml−1) were mostly dominant micrograzers, and protozoan community grazing increased up to 21% of bacterial standing stock per day. The proportion of active bacteria was strongly correlated with protozoan grazing (r=0.83).

Long term analyses of the microbial loop, centred on the picoplankton dynamics, were carried out over a five-year (1998 to 2002) period in Lake Alchichica (Puebla, Mexico), a high altitude tropical athalassohaline lake. The hydrodynamics of the lake followed a warm-monomictic pattern with mixing at a minimum temperature during the early dry season while the stratification was pronounced in the late dry season and throughout the rainy season; anoxic conditions in the hypolimnion lasted

Relationship between bacteria and ciliates was investigated in continuous cultures with and without the recycling of flocculated biomass. Monocultures of ciliates of various ecological types were used together with mixed cultures of bacteria or bacteria and flagellates. The effect of ciliates on the distribution of flocculated and dispersed, biomass was tested with respect to characterizing an optimum mixed culture for activated-sludge treatment. Monoprotozoal populations were not successful in stabilizing the morphology of a bacterial community in a system with recycling of flocculated biomass. Stabilization was observed (with particular ecological types of ciliates) in the system with a high residence time without recycling and/or in the system with the recycling inoculated by both flagellates and ciliates.

A methodical approach for the assessment of pelagic biomass and the main carbon fluxes in remote and hardly accessible mountain lakes was elaborated and tested. Number and biomass of bacteria (BAC), autotrophic picoplankton (APP), heterotrophic nanoflagellates (HNF), ciliates (CIL), phytoplankton (PHY), zooplankton smaller than 40 μm (ZOOS) and zooplankton larger than 40 μm (ZOOL) were investigated regularly during two ice-free periods in 13 European mountain lakes (1st level approach – fixed samples elaborated in specialized laboratories). Carbon fluxes measured in 9 lakes included: primary production, exudation by PHY and BAC uptake of exudates, BAC production, elimination of BAC. These processes were measured in the field by specialized teams (2nd level approach). The ranges of values found in mountain lakes were evaluated and possible methodical and interpretative errors discussed. BAC were a significant component of pelagic biomass. The intercomparison between different partners showed differences in bacterial counts lower than 10%, whereas the mean cell volumes measured fluctuated by more than 40%. APP was never found in a significant quantity, except in one lake. HNF and CIL, though regularly found, were usually scarce and only occasionally significant in terms of biomass. The main components of pelagic biomass were BAC, PHY and ZOOL+ZOOS, except for acidified lakes, where zooplankton was very low. In oligotrophic mountain lakes, the percentage of extracellular production in the total primary production was considerable. Bacterial abundance and production often reached values quite comparable with the situation found in lowland mesotrophic lakes during winter.

We analysed early spring protozooplankton peaks following winter stratification in two different basins (northeast, NE; southwest, SW) of an artificially-divided bog lake Grosse Fuchskuhle (Brandenburg, Germany). The maximum ciliate biomass and numbers (660 and 990 μg l -1 of organic carbon, and 290 and 260 cells ml -1 in NE and SW, respectively) were reached in the surface layer during the ice melting and then continuously decreased. The surface layers were numerically dominated by species of the genus Urotricha, while in the ciliate biomass during the first part of the study, a mixotrophic oligotrich, Pelagostrombidium mirabile prevailed (C org up to 940 μg l -1 ). We observed a conspicuous ciliate peak that could not be related to the feeding activity of the dominant ciliate species upon picoplankton. Seemingly, the peak was related to the specific conditions resulting from the ice melting where these ciliates could be concentrated. Additionally, the mixotrophy of oligotrichous species allowed them to penetrate below the oxycline, although feeding on nanoplankton such as flagellates was also very likely. Our direct measurements of uptake rates of bacteria showed that the abundant strombiduds were not nutritionally dependent on bacterivory. However, the ciliate uptake rate (up to 670 bacteria ciliate -1 h -1 ) contributed significantly to the overall bacteria mortality rate. The maximum (community average) cell-specific ciliate feeding rate of over 200 bacteria ciliates 1 h -1 was reached, along with an increasing contribution of scuticociliates, paralleled by a drop in large oligotrichs.

The in situ growth rates of dominant ciliate species were studied during and shortly after phytoplankton peaks in two water bodies: the eutrophic Ri'mov Reservoir (South Bohemia, Czech Republic) and the oligo-mesotrophic Piburger See (Tyrol, Austria). Growth rate estimates based on changes in ciliate abundances in incubated pre-screened samples (EN) were compared with those derived from the ciliate cell volume and ambient temperatures (£T). The values of EN were always rather lower than those of £T. During the studies, the food supply limited the ciliate growth depending on the ciliate feeding mode. An ecological grouping into filter feeding versus raptorial feeding ('hunt- ing') species, on the one hand, and attached/crawling (browsing) versus free swimming species, on the other hand, clearly affected experimental estimation. Both fine filter feeders (namely attached) and browsers exhibited a calculated £N closer to the theoretical (maximum) £T than did hunters and coarse filter feeders. It was apparent, for example, comparing £N and £T (day1) of the following species: filter feeders Halieria grandinella (£N = 0.42; £T >1.4), Strobilidium hexakinetum (0.34; >1.9), Pelagohalte- ria viridis (0.27; >0.9), Vorticella aquadulcis complex (0.75; >1.0); raptorial Balamon planctonicum (0.65; >1.5), Urotricha furcata (in Ri'mov Reservoir 0.65; >2.1; in Piburger See 0.20; >1.5), Rhab- doaskenasia minima (0.22; >1.0), Askenasia acrostomia (0.12; >0.6); opportunistic Cyrtolophosis mucicola (0.42; >1.6) and Cinetochilum margaritaceum (0.86; >1.4). Predation by rotifers apparently affected measurements in several samples containing —400 rotifers I"1; however, it seemed to be of little importance in the water column.

A limnological survey of eight small, atmospherically acidified, forested glacial lakes in the Bohemian Forest (Sumava, Bohmerwald) was performed in September 2003. Water chemistry of the tributaries and surface layer of each lake was determined, as well as species composition and biomass of the plankton along the water column, and littoral macrozoobenthos to assess the present status of the lakes. The progress in chemical reversal and biological recovery from acid stress was evaluated by comparing the current status of the lakes with results of a survey four years ago (1999) and former acidification data since the early 1990s. Both the current chemical lake status and the pelagic food web structure reflected the acidity of the tributaries and their aluminium (Al) and phosphorus (P) concentrations. One mesotrophic (Plesne jezero) and three oligotrophic lakes (Cerne jezero, Certovo jezero, and Rachelsee) are still chronically acidified, while four other oligotrophic lakes (Kleiner Arbersee, Prasilske jezero, Grosser Arbersee, and Laka) have recovered their carbonate buffering system. Total plankton biomass was very low and largely dominated by filamentous bacteria in the acidified oligotrophic lakes, while the mesotrophic lake had a higher biomass and was dominated by phytoplankton, which apparently profited from the higher P input. In contrast, both phytoplankton and crustacean zooplankton accounted for the majority of plankton biomass in the recovering lakes. This study has shown further progress in the reversal of lake water chemistry as well as further evidence of biological recovery compared to the 1999 survey. While no changes occurred in species composition of phytoplankton, a new ciliate species was found in one lake. In several lakes, this survey documented a return of zooplankton (e.g., Cladocera: Ceriodaphnia quadrangula and Rotifera: three Keratella species) and macrozoobenthos species (e.g., Ephemeroptera and Plecoptera). The beginning of biological recovery has been delayed for ∼20 years after chemical reversal of the lakes.