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International audience; The productivity of most marine ecosystems is limited by the availability of dissolved nitrogen (N) and phosphorus (P). Nutrient recycling is therefore a key process for ecosystem functioning. Fish recycle nutrients through the excretion of ammonia and phosphate and can influence the abundance and community structure of primary producers such as phytoplankton. However, the effect of fish on other plankton compartments, and whether all fish species have similar effects, is largely unknown. We used a tank experiment to test how 2 Mediterranean fish species, gilthead seabream Sparus aurata and golden mullet Chelon auratus, with distinctly different N and P excretion rates, can affect the abundance and community structure of 3 plankton compartments: phytoplankton, bacterioplankton, and microzooplankton. We found that the nutrients released by seabream (whose excreta had an N:P molar ratio greater than the Redfield ratio of 16:1) induced a substantial increase in the abundance of all plankton compartments. In addition, with seabream, the relative abundance of diatoms in the phytoplankton communities increased. However, no significant change was observed with mullet, which had a low excreta N:P molar ratio, suggesting that the growth of microbial plankton was limited by the availability of N. Our results demonstrate that nutrient excretion by fish affects the microbial food web through a species-specific bottom-up effect on the total abundance and community structure of the phytoplankton, bacterioplankton, and microzooplankton communities.

Author Correction: Demonstration of facilitation between microalgae to face environmental stress. In Scientific Reports, vol; 10, n°1, Article : 3557 ; DOI: 10.1038/s41598-020-59860-0 ; WOS:000563252500001 Author Correction: Demonstration of facilitation between microalgae to face environmental stress. In Scientific Reports, vol; 10, n°1, Article : 3557 ; DOI: 10.1038/s41598-020-59860-0 ; WOS:000563252500001The original version of this Article omitted an affiliation for Emna Krichen and the Acknowledgements section contained typographical errors and was incomplete. This erratum is available as an annex file.; International audience; Positive interactions such as facilitation play an important role during the biological colonization and species succession in harsh or changing environments. However, the direct evidence of such ecological interaction in microbial communities remains rare. Using common freshwater microalgae isolated from a High Rate Algal Pond HRAP treating wastewaters, we investigated with both experimental and modeling approaches the direct facilitation between two algal strains during the colonization phase. Our results demonstrate that the first colonization by microalgae under a severe chemical condition arose from the rapid growth of pioneer species such as Chlorella sorokiniana, which facilitated the subsequent colonization of low growth specialists such as Scenedesmus pectinatus. The pioneer species rapidly depleted the total available ammonia nitrogen favoring the specialist species initially inhibited by free ammonia toxicity. This latter species ultimately dominated the algal community through competitive exclusion under low nutrient conditions. We show that microbial successions are not only regulated by climatic conditions but also by interactions between species based on the ability to modify their growth conditions. We suggest that facilitation within the aquatic microbial communities is a widespread ecological interaction under a vast range of environmental stress.

International audience; Several studies focused on wastewater treatment in High Rate Algal Ponds (HRAP) suggest that highly variable climatic conditions cause large variations of microalgal biomass productivity. In the present study, we show that similar carbon, nitrogen and phosphorus removal efficiencies were reached in different HRAPs treating urban wastewaters located in two different temperate (Mediterranean and oceanic) climates. Furthermore, similar ecological successions were observed in these HRAPs. During the start-up phase, the consumption of organic matter by detritivores, already present in the wastewater, appears to be necessary for the microalgae to grow within two weeks in spring. The growth of the rapid-growing species, Chlorella sp., followed by the grazing-resilient species, Scenedesmus sp., combined with nitrifying and denitrifying bacterial activity, removed most the ammonia. The resulting exhaustion of ammonia would limit the complete removal of dissolved COD by bacteria and phosphate by microalgae in the HRAPs. This study shows that similar biological and environmental constraints were applied on the HRAPs, making the process efficiency highly reproducible under different temperate latitudes.

Recent observations in polar marine waters have shown that a large fraction of primary production may be lost to respiration by planktonic bacteria due to very low bacterial growth efficiencies in cold waters. Here we report that sea temperature may be a key factor (but not the only one) influencing the interaction between bacteria and primary production in North Atlantic and Arctic waters, suggesting that low primary production rates could not sustain bacterial carbon demand in the coldest Arctic waters. The use of freshly produced phytoplankton exudate by bacteria in early- and mid-summer was assessed, together with the bacterial uptake of dissolved inorganic nitrogen (DIN = nitrate and ammonium), in surface waters along a latitudinal gradient from the North Sea to the Arctic sea ice. Bacterial production was independent of the low primary production measured in the coldest waters. Under these conditions, heterotrophic bacteria can consume a large fraction of DIN and N-rich organic matter, making them strong contributors to N fluxes in these waters.

International audience; The impact of fish and oysters on components of the pelagic microbial food web (MFW) was studied in a 10 d mesocosm experiment using Mediterranean coastal waters. Two mesocosms contained natural water only (‘Controls’), 2 contained natural water with Crassostrea gigas (‘Oyster’), and 2 contained natural water with Atherina spp. (‘Fish’). Abundances and biomasses of microorganisms (viruses, bacteria, phytoplankton, heterotrophic flagellates, and ciliates) were measured to estimate their contribution to the total microbial carbon biomass. Two MFW indices, the microbial autotroph:heterotroph C biomass ratio (A:H) structural index and the gross primary production:respiration ratio (GPP:R) functional index, were defined. In the Fish mesocosms, selective predation on zooplankton led to a trophic cascade with 51% higher phyto- plankton C biomass and consequently higher A:H and GPP:R than in the Controls. By the end of the experiment, the Oyster mesocosms had a bacterial C biomass 87% higher and phytoplankton C biomass 93% lower than the Controls, giving significantly lower A:H and GPP:R (1), whereas oyster activities made the MFW more hetero- trophic (both indices

International audience; Rivers are known to be major contributors to eutrophication in marine coastal waters, but little is known on the short-term impact of freshwater surges on the structure and functioning of the marine plankton community. The effect of adding river water, reducing the salinity by 15 and 30%, on an autumn plankton community in a Mediterranean coastal lagoon (Thau Lagoon, France) was determined during a 6-day mesocosm experiment. Adding river water brought not only nutrients but also chlorophyceans that did not survive in the brackish mesocosm waters. The addition of water led to initial increases (days 1-2) in bacterial production as well as increases in the abundances of bacterioplankton and picoeukaryotes. After day 3, the increases were more significant for diatoms and dinoflagellates that were already present in the Thau Lagoon water (mainly Pseudo-nitzschia spp. group delicatissima and Prorocentrum triestinum) and other larger organisms (tintinnids, rotifers). At the same time, the abundances of bacterioplankton, cyanobacteria, and picoeukaryote fell, some nutrients (NH4 (+), SiO4 (3-)) returned to pre-input levels, and the plankton structure moved from a trophic food web based on secondary production to the accumulation of primary producers in the mesocosms with added river water. Our results also show that, after freshwater inputs, there is rapid emergence of plankton species that are potentially harmful to living organisms. This suggests that flash flood events may lead to sanitary issues, other than pathogens, in exploited marine areas.

Different calculations of bacterial carbon demand (BCD) were applied to bacterioplanktonic production datasets from oceanic euphotic waters and compared with estimates of dissolved and total phytoplanktonic production estimates. All calculations showed that the BCD in low productive waters was not supported by contemporary dissolved phytoplanktonic production or by the whole phytoplanktonic production when empirically modeled bacterial respiration and growth efficiency rates were used. This supports the new ecological concept of bacterial independence on phytoplankton production at the time scales (days, weeks) relevant to the microbial generation times observed in the oceans and used in biological and ecological models.

Positive relationships between heterotrophic bacteria and particulate phytoplankton production (respectively, BP and PPP) have been reported for several areas, suggesting that material produced by phytoplankton was a major substrate for bacterial growth. Since then, thousands of simultaneous measurements of both PPP and BP have been performed. A review of these data showed that BP may exceed PPP considerably (median ranged between 132% and 484%) in all aquatic systems with the lowest PPP. In oceanic waters, BP did not seem to be temporally synchronized with PPP and the median BP : PPP ratio is 15% with moderate PPP, but the immediate bacterial carbon (C) demand (including bacterial respiration) was greater than the corresponding total primary production (i.e. dissolved and particulate primary production) for >80% of both volumetric and areal datasets. In freshwaters, the strong covariation observed between BP and PPP seemed mainly due to a common response to sudden nutrient inputs into enclosed systems, leading to a similar range of production rates and temporal synchronicities. Indeed, phytoplankton exudates contributed directly to only 32% (median) of BP when C-tracking experiments were performed in freshwaters. Therefore, because direct C dependency of bacteria on phytoplankton is questionable, other C sources might be more significant for bacterial growth.

We estimated rates of heterotrophic bacterial and phytoplankton uptake of nitrate, ammonium, and urea using 15 N-labelled nitrogen and specific metabolic inhibitors of prokaryote and eukaryote nitrogen metabolism in the surface waters of the North Water (northern Baffin Bay) during autumn that were charactenzed by the absence of cyanobactena (comprising prochlonphytes). The percentage of nitrate + ammonium uptake by heterotrophic bacteria ranged between 44 and 78% of the measured total uptake and was the highest when the phytoplankton biomass was relatively low (

The influence of dissolved inorganic nitrogen (DIN) enrichments on cell-normalized carbon uptake rate, chlorophyll a content, and apparent cell size of a picoeukaryote (1 microm) ( Ostreococcus tauri, the smallest eukaryotic cell) from a natural summer phytoplanktonic assemblage (200 microm) in a northern Mediterranean Lagoon (Thau Lagoon) was studied in 20-L enclosures in June 1995. The natural planktonic community was incubated in situ for 24 h with initial ammonium and nitrate enrichments and compared to a control without enrichment. O. tauri cell-normalized productivity was estimated from the combination of flow cytometric (FCM) enumeration and 2-h (radioactive) carbonate incorporation measured on post-incubation size fractions (1microm). No difference between the effects of the two DIN sources of enrichment on the studied biological parameters was measured during this experiment. Growth of natural O. tauri was perturbed by the low DIN availability in the control with drastic changes in cell productivity, chlorophyll content, and cell cycle (from the variations in apparent cell size) as compared to the DIN sufficiency conditions. On the other hand, a very high specific growth rate for natural O. tauri, up to 8 day(-1) under DIN enrichments, has been estimated from production and abundance data obtained during this experiment. This supports values measured in culture and suggests that the yearly high contribution of picophytoplankton to the total primary production in Thau Lagoon is likely to be due to their high growth rate rather than the previously suggested lack of grazing pressure.

The importance of heterotrophic bacteria relative to phytoplankton in the uptake of ammonium and nitrate was studied in Mediterranean coastal waters (Thau Lagoon) during autumn, when the Mediterranean Sea received the greatest allochthonous nutrient loads. Specific inhibitors and size-fractionation methods were used in combination with isotopic 15N tracers. NO3 − and NH4 + uptake was dominated by phytoplankton (60 % on average) during the study period, which included a flood event. Despite lower biomass specific NH4 + and NO3 uptake rates, free-living heterotrophic bacteria contributed significantly (>30 %) to total microbial NH4 + and NO3 − uptake rates in low chlorophyll waters. Under these conditions, heterotrophic bacteria may be responsible for more than 50 % of primary production, using very little freshly produced phytoplankton exudates. In low chlorophyll coastal waters as reported during the present 3-month study, the heterotrophic bacteria seemed to depend to a greater extent on allochthonous N and C substrates than on autochthonous substrates derived from phytoplankton.

International audience; The effects of grazing pressure and inorganic nutrient availability on the direct carbon transfer from freshly produced phytoplankton exudates to heterotrophic bacteria biomass production were studied in Mediterranean coastal waters. The short-term incorporation of 13C (H13CO3) in phytoplankton and bacterial lipid biomarkers was measured as well as the total bacterial carbon production (BP), viral lysis and the microbial community structure under three experimental conditions: (1) High inorganic Nutrient and High Grazing (HN + HG), (2) High inorganic Nutrient and Low Grazing (HN + LG) and (3) under natural in situ conditions with Low inorganic Nutrient and High Grazing (LN + HG) during spring. Under phytoplankton bloom conditions (HN + LG), the bacterial use of freshly produced phytoplankton exudates as a source of carbon, estimated from 13C enrichment of bacterial lipids, contributed more than half of the total bacterial production. However, under conditions of high grazing pressure on phytoplankton with or without the addition of inorganic nutrients (HN + HG and LN + HG), the 13C enrichment of bacterial lipids was low compared with the high total bacterial production. BP therefore seems to depend mainly on freshly produced phytoplankton exudates during the early phase of phytoplankton bloom period. However, BP seems mainly relying on recycled carbon from viral lysis and predators under high grazing pressure.

International audience; Few studies on the consequences of future global warming and increased ultraviolet-B radiation (UVBR, 280-320nm) have been carried out at the food web scale and very few have considered the effect of the combination of these two climatic stressors. The single and combined effect of 3°C warming and 20% increased UVBR on planktonic carbon and nitrogen dynamics was investigated during a 10-day mesocosm experiment in coastal Mediterranean waters. Planktonic organisms from Thau Lagoon were sampled and incubated into eight in situ moored 2000L mesocosms and exposed to 4 different temperature and light conditions in duplicates; 1) natural light and temperature conditions; 2) +3°C above in situ water temperature; 3) +20% above incident UVBR, and 4) simultaneous +3°C and +20% above natural conditions. Compared to the natural in situ temperature and light conditions, increasing UVBR alone reduced bacterial carbon production and biomass by an average of 20%, with some reduction in ammonium net production. Warming alone significantly reduced bacterial carbon production by about 40% as a consequence of a trophic cascade effect on bacterial biomass. Warming also increased phytoplankton carbon production and associated nitrate uptake rates by an average of 90% and 200%, respectively. Thus, the results showed a direct positive effect of temperature increase on phytoplankton metabolism and greater nutrient availability owing to the reduction in potential bacterial competition. The combination of temperature and increased UVBR significantly increased the autotrophic production but without accumulation of freshly produced particulate organic matter. This suggests an accumulation of dissolved organic matter under these climatic conditions.

Background Small size eukaryotes play a fundamental role in the functioning of coastal ecosystems, however, the way in which these micro-organisms respond to combined effects of water temperature, UVB radiations (UVBR) and nutrient availability is still poorly investigated. Results We coupled molecular tools (18S rRNA gene sequencing and fingerprinting) with microscope-based identification and counting to experimentally investigate the short-term responses of small eukaryotes ( Conclusions This multifactorial experiment highlights the potential impacts, over short time scales, of changing environmental factors on the structure of various functional groups like small primary producers, parasites and saprotrophs which, in response, can modify energy flow in the planktonic food webs.

Over the past 20 years, plants have been used to anincreasing extent in various environments for mitigat-ing pollutant concentrations in contaminated sites(soils or waters) and for producing biodiesel. How-ever, because plant growth rates and biomass yieldsare low and because a considerable amount of waterand large surface area are required, intensive cultiva-tion of microalgae has been proposed as an alternativemethod for phycoremediation and producing bio-energy (Dismukes et al. 2008; Rawat et al. 2011).However, mass cultivation of microalgae in opensystems (and, to a certain extent, in closed systems) issubject to strong competition (from local microalgalcommunities when single species microalgal biopro-cesses are considered) and predation and are partic-ularly sensitive to sudden changes in environmentalconditions (light, temperature and nutrient availabil-ity). Such factors may contribute to the rapid collapseof the microalgae culture. The use of indigenousmicroalgae species for local intensive production,better adapted to local climatic conditions, may reducepotential competition to some extent without risk ofthe culture becoming noxious or invasive, as claimedrecently by Wilkie et al. (2011). However, the stabilityof microalgal productivity in a single species culture isdoubtful when cultures are supplied with heteroge-neous wastewaters containing various organic andinorganic compounds, some of which are toxic,together with their own microbial communities feed-ing on the waste.The application of ecological observations ofnatural ecosystems to large-scale microalgal cultiva-tion might help to ensure successful, intensive, stablemass algal production by increasing the efficiency ofmultiple resource use and by reducing potentialcompetition and predation.1 Exploiting microalgal diversityRecent studies have shown positive relationshipsbetween microalgae diversity and resource (phospho-rus, nitrate) use efficiency in freshwater and brackishcommunities (Ptacnik et al. 2008; Cardinale 2011).Algal communities with greater species richness makebetter use of niche opportunities in an environment,allowing them to capture a higher proportion ofavailableresources(Cardinale2011).Thegreatvarietyof nutrition modes displayed by microalgae speciesfor acquiring carbon or nutrients helps to extendtheir niche opportunities in changing environments.Depending on the species, their physiology, cell sizeand biotic and abiotic environmental growth condi-tions, microalgae can use various forms of nitro-gen (elemental nitrogen, ammonium, nitrate, organic

Episodic river flash floods, characteristic of Mediterranean climates, are suspected to greatly affect the functioning of microbial food webs. For the first time, the abundance, biomass and diversities of microbial food web components were studied before and during 4 consecutive days after a flash flood that occurred in November 2008, in the surface waters of five stations along a salinity gradient from 20 to 36 in the Thau lagoon. Eukaryotic pico- and nanophytoplankton were discharged from the river into the lagoon and increased by 30- and 70-fold, respectively. Bacteria increased by only 2-fold in the lagoon, from around 4–8 × 106 cells ml−1, probably benefiting from river nutrient input. Chlorophyll a increased 4-fold, and pigment biomarkers showed that the dinophyceae, prasinophyceae and prymnesiophyceae were sensitive to the flood perturbation, whereas the bacillariophyceae, cryptophyceae and chlorophyceae were resistant and/or transported to the lagoon from the river. Predator responses were more complex as total heterotrophic flagellate abundance decreased slightly, whereas those of specific naked ciliates increased, particularly for Uronema sp. The flood also induced a specific change in diversity, from a community dominated by Strobilidium spiralis to a community dominated by Uronema sp. The tintinnid community was particularly sensitive to the flood event as the abundance of all species decreased greatly. The high increases in biomass, mainly brought by the river during the flood, could have eventually sedimented to the benthic layer and/or been transported further into the lagoon, supporting the pelagic food web, or have even been exported to the Mediterranean Sea.

New and regenerated production were estimated from nitrate, ammonium and urea uptake in the highly productive North Water region (NOW, northern Baffin Bay) during the late summer bloom and its decline in early autumn 1999. Nitrogen uptake rates decreased due to a significant 4-fold reduction of the average irradiance in the euphotic zone between these 2 periods. Nitrate availability also regulated the relative uptake of nitrate (ratio of nitrate uptake to total nitrogen uptake, or f-ratio) over spatial scales in early autumn. Stations located along the Greenland coast, which had relatively warm (-0.5°C) and saline (32.5) waters, had higher nitrate concentrations (153 vs. 51 mmol N m -2 ) and f-ratios (0.36 vs. 0.16) than those of stations located on the Canadian side, where the euphotic zone was relatively colder (-1.4°C) and less saline (30.6). The f-ratios were also corrected for nitrogen uptake by heterotrophic bacteria using the results from experiments that employed specific metabolic inhibitors. The corrected f-ratio range of 0.24 to 0.41 considered only the fraction of the nitrogen uptake due to phytoplankton in order to obtain a more accurate estimate of new production. Based on this range, new production varied from 203 to 346 and 85 to 145 mg C m -2 d -1 in late summer and early autumn, respectively. For the entire sampling period, averaged new production was 132 to 228 mg C m -2 d -1 ; however, when the dissolved form was included, we estimated that new production may double to between 262 and 452 mg C m -2 d -1 . This estimate illustrates that dissolved forms can be significant and need to be considered. When combining our results with those from the literature, new production in the NOW in 1998 - 99 amounted to between 143 and 152 g C m -2 yr -1 , suggesting that 60% of the total annual primary production may potentially be exported from the euphotic zone. This study completes the first annual time series of new production in a high-latitude ecosystem.

During the ANTARES 3 cruise in the Indian sector of the Southern Ocean in October-November 1995, the surface waters of Kerguelen Islands plume, and the surface and deeper waters (30-60 m) along a transect on 62 degrees E from 48 degrees 36'8 to the ice edge (58 degrees 50'S), were sampled. The phytoplankton community was size-fractionated (2 mu m) and cell numbers, chlorophyll biomass and carbon assimilation, through Rubisco and beta-carboxylase activities, were characterized. The highest contribution of 2 mu m. The mixotrophic capacity of these small cells is proposed. From sampling stations of the Kerguelen plume, a relationship was observed between the Rubisco activity per picophytoplankton cell and apparent cell size, which varied with the sampled water masses. Moreover, a depth-dependent photoperiodicity of Rubisco activity per cell for

Recently, the Arctic has experienced a recurrent springtime thinning of the stratospheric ozone layer resulting in increasing ultraviolet-B radiation (UVBR, 280 to 320 nm). However, little is known about the effect of such UVBR enhancement on the Arctic ecosystem. In spring-summer 1998 and fall 1999, 40 stations were investigated in the North Water Polynya (NOW), High Arctic. In the course of this study, 3 periods (pre-bloom, bloom and post-bloom) were distinguished based on chlorophyll a (chl a) concentrations. The attenuation of ultraviolet radiation (UVR) and photosynthetically available radiation (PAR) are reported here. Bio-optical factors, namely particulate organic carbon (POC), dissolved organic carbon (DOC) and chl a concentrations were related to the attenuation coefficient, K d (λ), of both UVR and PAR. During the pre-bloom period (9 April to 12 May 1998), all bio-optical factors except chl a concentrations were unrelated to K d (λ). However, the absorption of colored dissolved organic matter might prevail. During the bloom period (15 May to 29 June 1998), both chl a and POC were strongly correlated to K d (λ). During the post-bloom period (27 August to 25 September 1999), POC contributed from 57 to 83 % of the K d (λ). Under stratification conditions, an inverse relationship was observed in the UVR and PAR ranges, between K d (λ) and the depth of the subsurface chlorophyll maximum (SCM). This could be a consequence of cell migration below the penetration depth of UVR where they are protected from UVR-induced physiological damages.

Using size-fractionation filtration (1 μm), we associated carboxylase activities (Rubisco, β-carboxy-lases) and chlorophyll measurements with cell enumeration by flow cytometry at a permanent site of the central Ligurian Sea in the north-western Mediterranean Sea (73°25 1 N-7°51 'E). The analyses were carried out over a day/night cycle (at 30 m depth) following a strong wind event, during the transition period from spring mesotrophic to summer oligotrophic conditions. The highest values of Rubisco activity and β-carboxylase activity per chlorophyll a (Chl a) for >1 μm cells were observed during the light period of the cycle, reaching 18.9 and 4.3 nmol CO 2 (μg Chl a) -1 h -1 , respectively. This higher activity is assumed to be correlated with a dominance of nanoflagellates in the phytoplankton community Such phytoplankton species generally had higher β-carboxylase activity, expressed as a percentage of Rubisco activity (the βC/R ratio), than diatoms. Using flow cytometry analysis to enumerate those cells < 1 μm in size, we followed the values of Rubisco activity and pigment content expressed per cell, for picophytoplankton cells. The photoautotrophic activity, measured as the in vitro Rubisco activity for small picoeukaryote cells, was higher than for cyanobacteria cells with lower apparent cell size. These results suggested an optimum of CO 2 assimilation reached by the pico- and nano-phytoplankton in accordance with the cell size and growth rates from previous observations in the literature.