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Classical ecological theory posits that species partition resources such that each species occupies a unique resource niche. In general, the availability of more resources allows more species to co‐occur. Thus, a strong relationship between communities of consumers and their resources is expected. However, correlations may be influenced by other layers in the food web, or by the environment. Here we show, by studying the relationship between communities of consumers (land snails) and individual diets (from seed plants), that there is in fact no direct, or at most a weak but negative, relationship. However, we found that the diversity of the individual microbiome positively correlates with both consumer community diversity and individual diet diversity in three target species. Moreover, these correlations were affected by various environmental variables, such as anthropogenic activity, habitat island size, and a possibly important nutrient source, guano runoff from nearby caves. Our results suggest that the microbiome and the environment explain the absence of correlations between diet and consumer community diversity. Hence, we advocate that microbiome inventories are routinely added to any community dietary analysis, which our study shows can be done with relatively little extra effort. Our approach presents the tools to quickly obtain an overview of the relationships between consumers and their resources. We anticipate our approach to be useful for ecologists and environmentalists studying different communities in a local food web.

We describe three new species of forest robin in the genus Stiphrornis; two from West Africa and one from the Congo Basin. Each species represents a distinct phylogenetic lineage based on genetic analysis. In addition to genetic differentiation, each new species is diagnosable from other Stiphrornis lineages by morphology, and by plumage. One of the new species appears to be restricted to the Central and Brong-Ahafo Regions of Ghana, and another is restricted to Benin and the Central Region of Ghana. In Ghana, these two new species presumably come into contact with Stiphrornis erythrothorax (Western Region of Ghana and westward), and there is evidence that one of the new species has a distinguishably different song from erythrothorax. The distribution of the third new species is primarily on the south bank of the Congo River, near the city of Kisangani. Recognition of these species provides additional evidence that Afrotropical forests are harbouring substantial cryptic diversity, and that our knowledge o...

Source at https://doi.org/10.1007/s10531-017-1343-7 . Chikanda is a traditional dish made with wild-harvested ground orchid tubers belonging to three orchidioid genera, Disa, Satyrium and Habenaria, all of which are CITES appendix II-listed. Identification of collected orchid tubers is very difficult and documentation of constituent species in prepared chikanda has hitherto been impossible. Here amplicon metabarcoding was used in samples of six prepared chikanda cakes to study genetic sequence diversity and species diversity in this product. Molecular operational taxonomic unit identification using similarity-matching reveals that species of all three genera were present in the chikanda samples studied. Disa was present in all of the samples, Satyrium in five out of six and Habenaria in one of the samples, as well as a number of other plants. The fact that each sample contained orchids and the presence of a wide variety of species from all genera in this traditional dish raise serious concerns about the sustainability of this trade and the future of wild orchid populations in the main harvest areas. This proof-of-concept study shows that Ion-Torrent PGM is a cost-effective scalable platform for metabarcoding using the relatively long nrITS1 and nrITS2 regions. Furthermore, nrITS metabarcoding can be successfully used for the detection of specific ingredients in a highly-processed food product at genus level, and this makes it a useful tool in the detection of possible conservation issues arising from commercialized trade or processed plant products.

Pollen, botanical macrofossils, chemical components and ancient DNA were studied in samples from the rumen of a frozen Yakutian bison (Bison priscus) that lived ca. 10,500 cal a BP. The dialkyl glycerol ether lipid archaeol (2,3-di-O-phytanyl-sn-glycerol) was detected and is interpreted to have been derived from methanogenic Archaea in the rumen. This is the oldest reported occurrence of archaeol attributed to digestive tract Archaea. Remains of shrubs (Alnus, Betula, Salix) and Poaceae indicate that the animal probably lived in a landscape of predominantly dry soils, intermixed with wetlands containing herbaceous plant species, as indicated by remains of Comarum palustre, Caltha palustris, Eriophorum, Sparganium, Menyanthes trifoliata and Utricularia. All recorded taxa still occur in the present-day Yakutian tundra vegetation. We discuss the representativeness in space and time of the methods used. Both the botanical microfossil and the macrofossil records may be biased because of differences in pollen production and dispersal between species, the food choice of the bison, and the season of death of the animal. Similarities and differences are discussed to highlight pitfalls of the individual analytical techniques. We highlight the power of data integration.

The last meal of a horse that lived in the northern part of the Sakha Republic (Russia) c. 5400 years ago was studied using pollen, spores, botanical macroremains, lipid composition, and ancient DNA in order to reconstruct its components. Pollen of Poaceae was superabundant, but this may be because of over-representation as a consequence of grazed inflorescenses of grasses. We evaluate the paleo-environmental indicator value of the different methods applied. Botanical macrofossils and chemical data show what the animal had eaten. Pollen grains and the aDNA record also give information about taxa that occurred elsewhere in the landscape. The combined data point to an open landscape of a coastal tundra dominated by graminoids (Poaceae, Cyperaceae) with a limited amount of Birch and Alder.

Humans colonized the Balearic Islands 5–4 ka ago. They arrived in a uniquely adapted ecosystem with the Balearic mountain goat Myotragus balearicus (Bovidae, Antilopinae, Caprini) as the only large mammal. This mammal went extinct rapidly after human arrival. Several hypotheses have been proposed to explain the extinction of M. balearicus. For the present study ancient DNA analysis (Sanger sequencing, Roche-454, Ion Torrent), and pollen and macrofossil analyses were performed on preserved coprolites from M. balearicus, providing information on its diet and paleo-environment. The information retrieved shows that M. balearicus was heavily dependent on the Balearic box species Buxus balearica during at least part of the year, and that it was most probably a browser. Hindcast ecological niche modelling of B. balearica shows that local distribution of this plant species was affected by climate changes. This suggests that the extinction of M. balearicus can be related to the decline and regional extinction of a plant species that formed a major component of its diet. The vegetation change is thought to be caused by increased aridity occurring throughout the Mediterranean. Previous hypotheses relating the extinction of M. balearicus directly to the arrival of humans on the islands must therefore be adjusted.