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Marine reserves are widely used throughout the world to prevent overfishing and conserve biodiversity, but uncertainties remain about their optimal design. The effects of marine reserves are heterogeneous. Despite theoretical findings, empirical studies have previously found no effect of size on the effectiveness of marine reserves in protecting commercial fish stocks. Using 58 datasets from 19 European marine reserves, we show that reserve size and age do matter: Increasing the size of the no-take zone increases the density of commercial fishes within the reserve compared with outside; whereas the size of the buffer zone has the opposite effect. Moreover, positive effects of marine reserve on commercial fish species and species richness are linked to the time elapsed since the establishment of the protection scheme. The reserve size-dependency of the response to protection has strong implications for the spatial management of coastal areas because marine reserves are used for spatial zoning. This work has been carried out with financial support from the Commission of the European Community, specific RTD programme "Specific Support to Policies", SSP-2003-006539 "European Marine Protected Areas as Tools for Fisheries Management and Conservation (EMPAFISH)".

Background: DNA barcoding enhances the prospects for species-level identifications globally using a standardized and authenticated DNA-based approach. Reference libraries comprising validated DNA barcodes (COI) constitute robust datasets for testing query sequences, providing considerable utility to identify marine fish and other organisms. Here we test the feasibility of using DNA barcoding to assign species to tissue samples from fish collected in the central Mediterranean Sea, a major contributor to the European marine ichthyofaunal diversity. Methodology/Principal Findings: A dataset of 1278 DNA barcodes, representing 218 marine fish species, was used to test the utility of DNA barcodes to assign species from query sequences. We tested query sequences against 1) a reference library of ranked DNA barcodes from the neighbouring North East Atlantic, and 2) the public databases BOLD and GenBank. In the first case, a reference library comprising DNA barcodes with reliability grades for 146 fish species was used as diagnostic dataset to screen 486 query DNA sequences from fish specimens collected in the central basin of the Mediterranean Sea. Of all query sequences suitable for comparisons 98% were unambiguously confirmed through complete match with reference DNA barcodes. In the second case, it was possible to assign species to 83% (BOLD-IDS) and 72% (GenBank) of the sequences from the Mediterranean. Relatively high intraspecific genetic distances were found in 7 species (2.2%-18.74%), most of them of high commercial relevance, suggesting possible cryptic species. Conclusion/Significance: We emphasize the discriminatory power of COI barcodes and their application to cases requiring species level resolution starting from query sequences. Results highlight the value of public reference libraries of reliability grade-annotated DNA barcodes, to identify species from different geographical origins. The ability to assign species with high precision from DNA samples of disparate quality and origin has major utility in several fields, from fisheries and conservation programs to control of fish products authenticity., peer-reviewed

The success of MPAs in conserving fishing resources and protecting marine biodiversity relies strongly on how well they meet their planned (or implicit) management goals. From a review of empirical studies aiming at assessing the ecological effects of Mediterranean and Macaronesian MPAs, we conclude that establishing an MPA is successful for (i) increasing the abundance/biomass, (ii) increasing the proportion of larger/older individuals, and (iii) enhancing the fecundity of commercially harvested populations; also, MPAs demonstrated to be effective for (iv) augmenting local fishery yields through biomass exportation from the protected area, and (v) inducing shifts in fish assemblage structure by increasing the dominance of large predator species. However, the attraction for tourism and diving due to ecological benefits of protection can cause damages likely to reverse some of the MPA effects. Other expected effects are more subject to uncertainty, and hence need more research, such as (vi) causing density-dependent changes in life history traits and (vii) protecting the recruitment of commercially important species, (viii) protecting marine biodiversity (including genetic diversity), (ix) causing ecosystem-wide effects such as trophic cascades, and (x) increasing community and ecosystem stability, thus promoting resilience and faster recovery from disturbance. Meta-analysis of data arising from these case studies are used to establish the overall effect of MPAs, and its relationship to MPA features, such as size of no-take area or time since protection. Based on the review and the meta-analyses, specific recommendations are provided for MPA management, regarding the establishment of goals and objectives, site selection, MPA design and zoning, planning, and monitoring. Finally, a series of recommendations for MPA research are offered to drive future research in MPA issues in the Mediterranean and Macaronesia., peer-reviewed