1. Effect of the bridge structure on the binding mode of the binuclear ruthenium complex to native DNA.
- Author
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Jeon, Bo Ram, Chitrapriya, Nataraj, Kwak, Min Ik, Jung, Maeng-Joon, Kim, Seog K., and Jang, Yoon Jung
- Subjects
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RUTHENIUM , *BRIDGING ligands , *NUCLEAR spectroscopy , *LINEAR dichroism , *DNA , *PHTHALIC acid , *STERIC hindrance - Abstract
Ruthenium(II) polypyridyl dimer containing large planar aromatic bridging ligands [ μ -(tpphz)(phen) 4 Ru 2 ]4+ (phen = 1,10-phenanthroline, tpphz = tetrapyrido[3,2-a:2′,3′-c:3″, 2″-h:2‴, 3‴-j]phenazine, bis- Ru-tpphz) were synthesized and characterized by elemental analysis, and 1H nuclear magnetic spectroscopy. The binding mode of the synthesized bis- Ru-tpphz to DNA was compared with those of the bis -Ru-bip, and bis -Ru-tatpp complexes. The structures of the connecting bridge of bis -Ru complexes were different. The absorption and reduced linear dichroism spectrum showed that the planar linker moiety of the bis -Ru-tatpp complex is inserted between the DNA base-pairs despite the steric hindrance originating from its large ruthenium ligand part, whereas the bis -Ru-bip complex has flexible linker binds at the groove of the DNA. The binding mode of the bis- Ru-tpphz complex, which has fused shorter bridge ligands than the bis -Ru-tatpp complex, was in contrast with the other two complexes. The bis- Ru-tpphz complex binds either at the groove of the DNA or to the negatively charged phosphate group; intercalative binding was prevented by either short bridge structure or steric hindrances from the phenanthroline ligand. In conclusion, the structure of the bridge of the bis -Ru(II) complex plays an important role in determining the binding mode of these compounds to DNA. To have the mode of insertion, the bridge ligand structure must be fused and have a sufficiently long distance. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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