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Efficient intercalation of a luminescent Ir(III) complex exclusively made of polypyridine ligands in natural and synthetic biopolymers is reported for the first time. The emission of the complex is largely enhanced in the presence of [poly(dA-dT)(2)] and strongly quenched in the presence of [poly(dG-dC)(2)]. By comparing the emission decays in DNA and in synthetic polynucleotides, it is proposed that the emission quenching of the title compound by guanine residues in DNA is no longer effective over a distance of four dA-dT base pairs., (© 2011 American Chemical Society)

Six bipyridyl complexes of platinum(II) with thiourea, with different substituents on thiourea moiety [Pt(bipy)(R,R'NCSNR'',R''')(2)]Cl(2) (bipy=2,2'-bipyridine: R=R'=R''=R''' =H; R=Me, R'=R''=R'''=H; R=n-Bu, R'=R''=R'''=H; R=Et, R'=H, R''=Et, R'''=H; R=p-tolyl, R'=R''=R'''=H; R=phenyl, R'=H, R''=phenyl, R'''=H), rationally designed to intercalate into DNA, have been tested against a cisplatin (cDDP)-sensitive human ovarian carcinoma cell line (2008) and its -resistant variant (C13( *)). We show here that the anti-proliferative efficacy of these drugs was dependent on molecular structure, since it increased with ancillary ligand bulkiness and hydrophobicity of substituents on thiourea moiety. In particular, the presence of two phenyl groups on thiourea moiety confers an outstanding cytotoxicity. The increasing cell growth inhibition along the series of complexes partially paralleled with drug accumulation, particularly in resistant cells, but not with drug intercalation into DNA since all compounds exerted comparable ethidium bromide displacement ability. The cDDP-resistant phenotype seems, at least in part, to be involved in the action of these compounds, since the level of cross-resistance established for most complexes appeared to be in agreement with the observed impairment of drug accumulation in the resistant subline. These findings indicate that resistance to alkylating agents such as cDDP confers low level of cross-resistance to this class of DNA intercalators, which, however, depending on substituents on thiourea moiety may present remarkable cell growth inhibition even of resistant cells.

A comparative investigation of the noncovalent interaction of the platinum(II) polypyridine complexes [Pt(dipy)(n-Rpy)2]2+ and [Pt(4,4'-Me2dipy)(2-Rpy)2]2+ (dipy = 2,2'-dipyridine; Me = CH3; n = 2-4; R = H or CH3) with double-helical DNA (calf thymus) and RNA [poly(A).poly(U)] has been conducted. With the exception of [Pt(dipy)(2-Mepy)2]2+, all of the complexes interact strongly, by intercalation, with both nucleic acids giving rise to large changes in the electronic spectra and induced circular dichroism signals; in addition, viscosity experiments on rodlike DNA and RNA show that both biopolymers elongate upon interaction with the complexes. The binding constant values, KB, determined at 25 degrees C, indicate that, at 0.101 M ionic strength, the affinity for poly(A).poly(U) is strongly dependent on the complexes nature, while for DNA it is leveled off. [Pt(dipy)(2-Mepy)2]2+ binds to DNA but does not interact appreciably with poly(A).poly(U).

Luminescence intensity changes of a Pt(II) complex which is known to bind externally to DNA at low [DNA]/[complex] ratio and to intercalate at high [DNA]/[complex] ratio are studied in the presence of calf thymus DNA. External binding is demonstrated to induce luminescence enhancement whereas intercalation leads to luminescence quenching. The reasons for this behaviour are discussed.

The interaction with DNA of the platinum(II) square planar complexes [Pt(N-N)(py)(2)](2+) (N-N = 1,10-phenanthroline (phen), dipyrido[3,2-d:2',3'-f]quinoxaline (dpq), dipyrido[3,2-a:2',3'-c]phenazine (dppz), benzodipyrido[b:3,2-h:2'3'-f]phenazine (bdppz)) has been investigated by means of absorption, circular and linear dichroism spectroscopy, DNA melting, and viscosity. In the presence of excess [DNA] all the complexes intercalate to the double helix. For those with the most extended phenanthrolines the binding mode depends on the [DNA]/[complex] ratio (q); at low q values the substances bind externally to DNA probably self-aggregating along the double helix. When the DNA concentration is large enough, the aggregate breaks up and the complex intercalates within the nucleobases. The complexes self-aggregate, without added DNA, in the presence of a large salt concentration.

The non-covalent interaction of the complexes [Pt(bpy)(R,R'NCSNR'',R''')(2)]Cl(2) (bpy=2,2'-bipyridine; R=R'=R''=R'''=H; R=Me, R'=R''=R'''=H; R=n-Bu, R'=R''=R'''=H; R=p-tolyl, R'=R''=R'''=H; R=Et, R'=H, R''=Et, R'''=H) with calf thymus DNA has been studied at pH 7 and 25 degrees C. The processes give rise to: (i) reversible bathochromic shifts and strong hypochromicity of the absorption bands of the complexes, (ii) induced circular dichroism and (iii) an increase both in the melting temperature and viscosity of the DNA comparable to that observed for other well known metallointercalators. The binding constants, K(B), have been determined spectrophotometrically using the McGhee von Hippel equation. Plot of logK(B) vs -log[Na(+)] for the complex with unsubstituted thiourea gives a straight line with a slope value close to that expected for a dicationic intercalator. The binding affinity of the various complexes for DNA is independent of the thiourea nature; this suggests that the intercalation occurs through stacking of the bpy moiety while the ancillary ligands lie outside the nucleobases far away from the sugar phosphate backbone. The data show also that the electronic effects of the ligand substituents are not transmitted to the intercalating unit.

Novel platinum(II) square planar coordination complexes, in which two heteroaromatic ligands are held by the metal in an unusual L-shaped geometry orthogonal to each other, have been synthesized, and their interaction with DNA was investigated with absorption and linear dichroism spectroscopy. As a rule, the ligand that is coplanar with the coordination square of Pt is found to be oriented perpendicular relative to the DNA helix axis when bound, suggestive of its intercalation between the base pairs of DNA. However, when this coplanar ligand is replaced by two pyridines, the opposite ligand, orthogonal to the coordination square, is instead preferentially intercalated. This behavior shows that these new complexes do indeed show some properties of true ambintercalators, i.e., compounds that can bind by intercalation of either of two distinct aromatic moieties.

The kinetics of substitution, by thiourea, of ethylenediamine (en) or N,N'-dimethylethylenediamine (Me(2)en) coordinated to palladium(II) in the complexes [Pd(4,4'-R(2)bpy)(en)](PF(6))(2) (bpy = 2,2'-bipyridine; R = H or Me), [Pd(en)(2)](PF(6))(2) and [Pd(Me(2)en)(2)](PF(6))(2) have been studied at 25 degrees C, pH 7 and various ionic strength values, in the presence of calf thymus DNA. The rate of the reaction in water depends on ionic strength, pH, and nucleophile concentration; at fixed pH and ionic strength the k(obsd) values are correlated to the square of the thiourea concentration. This rate law is not altered by the presence of DNA, but the rate of reaction is influenced, depending on the nature of ancillary ligand, L-L, bound to palladium. DNA inhibits the substitution process when L-L is bpy or 4,4'-Me(2)bpy and catalyzes the same reaction when L-L is en or Me(2)en. These opposite kinetic effects can be related to the noncovalent interactions of the various complexes with the DNA double helix. Inhibition of the reactivity of the complexes [Pd(4,4'-R(2)bpy)(en)](2+) is due to protection of the reaction center from nucleophile attack by DNA. Acceleration of the reaction when L-L is en or Me(2)en is related to the dependence of the rate of reaction on pH. If, due to the higher activity of water under the electric field of phosphate groups, hydronium ion concentration on DNA surface is higher than in the bulk solution, the enzyme-like dependence of the rate of reaction on [DNA] is due to progressive accumulation of the complexes around the double helix. Regardless of the complexes' nature, the rate constant values obtained in DNA at pH 7 correspond to values determined in water at pH 5. This pH value on the DNA surface, lower by about two units with respect to the bulk solution, is in good agreement with theoretical predictions. Acceleration of ethylenediamine substitution has been observed for all of the complexes studied in the presence of sodium polyvinylsulfonate.

The kinetics of substitution of pyridine or 2-methylpyridine, by iodide or thiourea, in the complexes [Pt(4'-R'terpy)(2-Rpy)](BF4)2 (R' = o-tolyl or H; R = H or CH3) has been studied, at 25 degrees C, pH 7, and various ionic strength values, in the presence of and without calf thymus DNA. The reactions occur in one observable step, and plots of kobsd against nucleophile concentration give straight lines with zero intercepts. DNA inhibits all the reactions studied without altering the rate law; the second-order rate constants k2 decrease systematically on increasing DNA concentration and are larger at higher ionic strength values. Partitioning of the ionic reactants in solution on electrostatic grounds can account for this kinetic effect in the reaction with iodide. Iodide is kept off the double helix proximity while the dicationic complexes concentrate on it. The inhibiting effect observed for the uncharged reagent thiourea can be related to the specific binding mode of the complexes to DNA. The complexes studied are effective intercalators to double helix, and this type of interaction, which prevents attack of thiourea at platinum, decreases their actual concentration in solution. The inhibiting effect is larger for [Pt(terpy)(py)]2+ that is a better intercalator. Likewise, the decrease in the rate of substitution of 2-Rpy, at a given [DNA] on decreasing ionic strength, is due to the influence of ionic strength on the complex-DNA interactions.

The interactions among the complexes [M(bpy)(en)]-(ClO4)2, [M(biq)(en)](ClO4)2(M = Pt or Pd; bpy = 2,2'-bipyridine, biq = 2,2'-biquinoline and en = ethylenediamine), [Pd(4,4'R2bpy)(en)] (ClO4)2(R = CH3 or C6H5), and [Pd(bpy)(R, R' N(CH2)2NR",R"')] (ClO4)2(R = R' = R" = R'" = H; R = CH3, R' = R" = R"' = H; ; R = CH3, R' = H, R" = CH3, R'" = H; R= C2H5, R' = R" = R"' = H; ; R = C2H5, R' = H, R" = C2H5, R'" = H) and calf thymus DNA have been studied via absorption and denaturation experiments. The processes give rise to: i) large bathochromic shifts and substantial hypochromicity of the absorption bands of the complexes, and ii) an increase in the DNA melting temperature larger than that observed for the known intercalator, ethidium bromide. Binding constants, K, have been determined spectrophotometrically at 25 degrees C, pH 7, and various ionic strengths, using the McGhee-von Hippel approach. Plots of log K vs. log [Na+] are linear, but the magnitudes of the slopes are always lower than expected on the basis of the formal +2 charge of the complexes. K values are larger for those substrates containing a greater number of aromatic rings; the presence of methyl substituents in the substances does not alter the binding avidity if substitution is at NH2 groups of ethylenediamine, while the binding strength is enhanced when substitution is at bpy rings. Homologous palladium (II) and platinum (II) complexes show very similar interaction patterns with DNA.