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The Northeast monsoon (NEM) exerts a significant influence on the climate system of Peninsular Malaysia (PM) and has profound implications for water resource management, flood control, and disaster preparedness in the region. This study employed CHIRPS rainfall data from 1981 to 2022 at a spatial resolution of 0.25° to generate climate zones. The performance of global climate models (GCMs) in replicating monthly rainfall was evaluated using multiple statistical metrics, with the top-ranked ones being used for the generation of future projection downscaled ensemble models. The NEM months (November, December, January, February, and March) were used as input parameters to form clustered homogeneous groups using the Ward hierarchical method. The optimal number of climate zones was determined using the elbow method, silhouette width values, and spatial evaluation. Ultimately, a 7-cluster solution was chosen due to its consistency and meaningful cluster formation. The zones were categorized into two regions: the West Coast and the East Coast, based on their geographical location and distinctive monthly NEM rainfall patterns. The analysis of the probability distribution function (PDF) showed that rainfall in the West Coast region had a more spread-out pattern with varying amounts, while rainfall in the East Coast region was more concentrated and consistent. The Northeast climate zone received the highest rainfall, attributed to its proximity to the South China Sea, mountainous areas, and the NEM convergence zone. In contrast, the Northwest and Lower Central-West climate zones received the lowest rainfall due to the rain shadow effect, limited moisture availability, and distance from major moisture sources. The CMCC-ESM2, CMCC-CM2-SR5, EC-Earth3, and CanESM5 consistently ranked among the highest performing models. After linear scaling bias correction, validated GCMs showed significant improvements, with improvements in MAE, NRMSE, PBIAS, RSR, NSE, MD, CP, R2, and KGE by 11–45%, 15–47%, 96–100%, 15–47%, 10–79%, 5–37%, 68–113%, 11–73%, and 9–51%, respectively. Analysis of NEM season rainfall patterns across climate zones indicated consistent mid-future increases for the Northwest and Lower Central-West zones (12.4–19.8%) and the Upper Central-West and Southwest zones (0.2–5.4%) across all scenarios. In the far-future, the Southeast zone saw an overall increase in rainfall (4.9–11.4%), while the Central-West zone exhibited mixed results (−4.0 to 5.6%). The results also highlighted spatial variability and the need to consider specific climate zones when assessing the impacts of climate change on the NEM, emphasizing the importance of incorporating these projections into long-term planning and decision-making processes. • Seven clusters were formed based on NEM rainfall patterns using Ward clustering. • The clustered was group into the West and East coast regions. • Northeast and East zone receives the highest rainfall distribution. • CMCC-ESM2, CMCC-CM2-SR5, EC-Earth3, and CanESM5 able to replicate NEM rainfall. • Climate zones in the West coast region consistently projected increased future rainfall. [ABSTRACT FROM AUTHOR]