56 results on '"Michael J. Van Stipdonk"'
Search Results
2. Destruction and reconstruction of UO22+ using gas-phase reactions
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Amanda R. Bubas, Evan Perez, Theodore A. Corcovilos, Árpád Somogyi, Luke J. Metzler, and Michael J. Van Stipdonk
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010405 organic chemistry ,Ligand ,Decarboxylation ,General Physics and Astronomy ,010402 general chemistry ,Uranyl ,Cleavage (embryo) ,Tandem mass spectrometry ,01 natural sciences ,Medicinal chemistry ,Dissociation (chemistry) ,0104 chemical sciences ,Ion ,chemistry.chemical_compound ,chemistry ,Physical and Theoretical Chemistry ,Fluoride - Abstract
While the strong axial UO bonds confer high stability and inertness to UO22+, it has been shown that the axial oxo ligands can be eliminated or replaced in the gas-phase using collision-induced dissociation (CID) reactions. We report here tandem mass spectrometry experiments initiated with a gas-phase complex that includes UO22+ coordinated by a 2,6-difluorobenzoate ligand. After decarboxylation to form a difluorophenide coordinated uranyl ion, [UO2(C6F2H3)]+, CID causes elimination of CO, and then CO and C2H2 in sequential dissociation steps, to leave a reactive uranium fluoride ion, [UF2(C2H)]+. Reaction of [UF2(C2H)]+ with CH3OH creates [UF2(OCH3)]+, [UF(OCH3)2]+ and [UF(OCH3)2(CH3OH)]+. Cleavage of C–O bonds within these species results in the elimination of methyl cation (CH3+). Subsequent CID steps convert [UF(OCH3)2]+ to [UO2(F)]+ and similarly, [U(OCH3)3]+ to [UO2(OCH3)]+. Our experiments show removal of both uranyl oxo ligands in “top-down” CID reactions and replacement in “bottom-up” ion–molecule and dissociation steps.
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- 2021
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3. Formation and hydrolysis of gas-phase [UO2 (R)]+ : R═CH3 , CH2 CH3 , CH═CH2 , and C6 H5
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Susan Kline, Amanda R. Bubas, Luke J. Metzler, Michael J. Van Stipdonk, Irena Tatosian, and Anna Iacovino
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Collision-induced dissociation ,010405 organic chemistry ,Decarboxylation ,Chemistry ,Radical ,010401 analytical chemistry ,Ketene ,01 natural sciences ,Medicinal chemistry ,Dissociation (chemistry) ,0104 chemical sciences ,Ion ,chemistry.chemical_compound ,Hydrolysis ,Density functional theory ,Spectroscopy - Abstract
The goals of the present study were (a) to create positively charged organo-uranyl complexes with general formula [UO2 (R)]+ (eg, R═CH3 and CH2 CH3 ) by decarboxylation of [UO2 (O2 C─R)]+ precursors and (b) to identify the pathways by which the complexes, if formed, dissociate by collisional activation or otherwise react when exposed to gas-phase H2 O. Collision-induced dissociation (CID) of both [UO2 (O2 C─CH3 )]+ and [UO2 (O2 C─CH2 CH3 )]+ causes H+ transfer and elimination of a ketene to leave [UO2 (OH)]+ . However, CID of the alkoxides [UO2 (OCH2 CH3 )]+ and [UO2 (OCH2 CH2 CH3 )]+ produced [UO2 (CH3 )]+ and [UO2 (CH2 CH3 )]+ , respectively. Isolation of [UO2 (CH3 )]+ and [UO2 (CH2 CH3 )]+ for reaction with H2 O caused formation of [UO2 (H2 O)]+ by elimination of ·CH3 and ·CH2 CH3 : Hydrolysis was not observed. CID of the acrylate and benzoate versions of the complexes, [UO2 (O2 C─CH═CH2 )]+ and [UO2 (O2 C─C6 H5 )]+ , caused decarboxylation to leave [UO2 (CH═CH2 )]+ and [UO2 (C6 H5 )]+ , respectively. These organometallic species do react with H2 O to produce [UO2 (OH)]+ , and loss of the respective radicals to leave [UO2 (H2 O)]+ was not detected. Density functional theory calculations suggest that formation of [UO2 (OH)]+ , rather than the hydrated UV O2+ , cation is energetically favored regardless of the precursor ion. However, for the [UO2 (CH3 )]+ and [UO2 (CH2 CH3 )]+ precursors, the transition state energy for proton transfer to generate [UO2 (OH)]+ and the associated neutral alkanes is higher than the path involving direct elimination of the organic neutral to form [UO2 (H2 O)]+ . The situation is reversed for the [UO2 (CH═CH2 )]+ and [UO2 (C6 H5 )]+ precursors: The transition state for proton transfer is lower than the energy required for creation of [UO2 (H2 O)]+ by elimination of CH═CH2 or C6 H5 radical.
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- 2019
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4. Gas-Phase Deconstruction of UO22+: Mass Spectrometry Evidence for Generation of [OUVICH]+ by Collision-Induced Dissociation of [UVIO2(C≡CH)]+
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Luke J. Metzler, Mary C. Sherman, Irena Tatosian, Anna Iacovino, Amanda R. Bubas, Michael J. Van Stipdonk, and Árpád Somogyi
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Collision-induced dissociation ,Orbital hybridisation ,Chemistry ,Decarboxylation ,010401 analytical chemistry ,010402 general chemistry ,Triple bond ,Mass spectrometry ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,Ion ,Crystallography ,Structural Biology ,Density functional theory ,Spectroscopy - Abstract
Because of the high stability and inertness of the U=O bonds, activation and/or functionalization of UO22+ and UO2+ remain challenging tasks. We show here that collision-induced dissociation (CID) of the uranyl-propiolate cation, [UVIO2(O2C-C≡CH)]+, can be used to prepare [UVIO2(C≡CH)]+ in the gas phase by decarboxylation. Remarkably, CID of [UVIO2(C≡CH)]+ caused elimination of CO to create [OUVICH]+, thus providing a new example of a well-defined substitution of an “yl” oxo ligand of UVIO22+ in a unimolecular reaction. Relative energies for candidate structures based on density functional theory calculations suggest that the [OUVICH]+ ion is a uranium-methylidyne product, with a U≡C triple bond composed of one σ-bond with contributions from the U df and C sp hybrid orbitals, and two π-bonds with contributions from the U df and C p orbitals. Upon isolation, without imposed collisional activation, [OUVICH]+ appears to react spontaneously with O2 to produce [UVO2]+.
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- 2019
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5. Formation of [Cu(CO2)(CH3OH)]+ and [Cu(N2)(CH3OH)]+ by gas-phase dissociation and exchange reactions
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Michael J. Van Stipdonk, Stephen Koehler, Árpád Somogyi, and Luke J. Metzler
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Decarboxylation ,Electrospray ionization ,010401 analytical chemistry ,010402 general chemistry ,Condensed Matter Physics ,Tandem mass spectrometry ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,Ion ,Isotopic labeling ,chemistry.chemical_compound ,chemistry ,Physical chemistry ,Density functional theory ,Methanol ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy - Abstract
Electrospray ionization and multiple-stage tandem mass spectrometry were used to study the collision-induced dissociation of methanol-coordinated copper-acetate cations, and the ion-molecule reactions of specific product ions. Our experiments led to the discovery of unusual gas-phase ions with compositions such as [Cu(CO2)(CH3OH)]+ and [Cu(N2)(CH3OH)]+. The latter is generated by spontaneous exchange of CO2 for N2 in an ion-molecule reaction. Isotopic labeling studies and high mass-resolution measurements provide data to support the product ion composition assignments. Density functional theory calculations corroborate the experimental observations, both with respect to the preferential decarboxylation over methanol ligand elimination, and the spontaneous nature of the ion-molecule reactions.
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- 2019
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6. Isotope labeling and infrared multiple-photon photodissociation investigation of product ions generated by dissociation of [ZnNO3(CH3OH2]+: Conversion of methanol to formaldehyde
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John K. Gibson, Michael J. Van Stipdonk, Jos Oomens, Evan Perez, Giel Berden, Jonathan Martens, Theodore A. Corcovilos, and Molecular Spectroscopy (HIMS, FNWI)
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FELIX Molecular Structure and Dynamics ,010405 organic chemistry ,Infrared ,Electrospray ionization ,Photodissociation ,Formaldehyde ,General Medicine ,010402 general chemistry ,Tandem mass spectrometry ,Photochemistry ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,Dissociation (chemistry) ,0104 chemical sciences ,Ion ,chemistry.chemical_compound ,chemistry ,Methanol ,Spectroscopy - Abstract
Electrospray ionization was used to generate species such as [ZnNO3(CH3OH)2]+ from Zn(NO3)2•XH2O dissolved in a mixture of CH3OH and H2O. Collision-induced dissociation of [ZnNO3(CH3OH)2]+ causes elimination of CH3OH to form [ZnNO3(CH3OH)]+. Subsequent collision-induced dissociation of [ZnNO3(CH3OH)]+ causes elimination of 47 mass units (u), consistent with ejection of HNO2. The neutral loss shifts to 48 u for collision-induced dissociation of [ZnNO3(CD3OH)]+, demonstrating the ejection of HNO2 involves intra-complex transfer of H from the methyl group methanol ligand. Subsequent collision-induced dissociation causes the elimination of 30 u (32 u for the complex with CD3OH), suggesting the elimination of formaldehyde (CH2 = O). The product ion is [ZnOH]+. Collision-induced dissociation of a precursor complex created using CH3-18OH shows the isotope label is retained in CH2 = O. Density functional theory calculations suggested that the “rearranged” product, ZnOH with bound HNO2 and formaldehyde is significantly lower in energy than ZnNO3 with bound methanol. We therefore used infrared multiple-photon photodissociation spectroscopy to determine the structures of both [ZnNO3(CH3OH)2]+ and [ZnNO3(CH3OH)]+. The infrared spectra clearly show that both ions contain intact nitrate and methanol ligands, which suggests that rearrangement occurs during collision-induced dissociation of [ZnNO3(CH3OH)]+. Based on the density functional theory calculations, we propose that transfer of H, from the methyl group of the CH3OH ligand to nitrate, occurs in concert with the formation of a Zn–C bond. After dissociation to release HNO2, the product rearranges with the insertion of the remaining O atom into the Zn–C bond. Subsequent C–O bond cleavage, with H transfer, produces an ion–molecule complex composed of [ZnOH]+ and O = CH2.
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- 2019
7. Collision‐induced dissociation of [UO 2 (NO 3 )(O 2 )] − and reactions of product ions with H 2 O and O 2
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Amanda R. Bubas, Scott D. Rissler, Evan Perez, Michael J. Van Stipdonk, and Luke J. Metzler
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Collision-induced dissociation ,010405 organic chemistry ,Ligand ,Chemistry ,010401 analytical chemistry ,Mass spectrometry ,01 natural sciences ,Medicinal chemistry ,Dissociation (chemistry) ,0104 chemical sciences ,Adduct ,Ion ,Quadrupole ion trap ,Isomerization ,Spectroscopy - Abstract
We recently reported a detailed investigation of the collision-induced dissociation (CID) of [UO2 (NO3 )3 ]- and [UO2 (NO3 )2 (O2 )]- in a linear ion trap mass spectrometer (J. Mass Spectrom. DOI:10.1002/jms.4705). Here, we describe the CID of [UO2 (NO3 )(O2 )]- which is created directly by ESI, or indirectly by simple elimination of O2 from [UO2 (NO3 )(O2 )2 ]- . CID of [UO2 (NO3 )(O2 )]- creates product ions as at m/z 332 and m/z 318. The former may be formed directly by elimination of O2 , while the latter required decomposition of a nitrate ligand and elimination of NO2 . DFT calculations identify a pathway by which both product ions can be generated, which involves initial isomerization of [UO2 (NO3 )(O2 )]- to create [UO2 (O)(NO2 )(O2 )]- , from which elimination of NO2 or O2 will leave [UO2 (O)(O2 )]- or [UO2 (O)(NO2 )]- , respectively. For the latter product ion, the composition assignment of [UO2 (O)(NO2 )]- rather than [UO2 (NO3 )]- is supported by ion-molecule reaction behavior, and in particular, the fact that spontaneous addition of O2 , which is predicted to be the dominant reaction pathway for [UO2 (NO3 )]- is not observed. Instead, the species reacts with H2 O, which is predicted to be the favored pathway for [UO2 (O)(NO2 )]- . This result in particular demonstrates the utility of ion-molecule reactions to assist the determination of ion composition. As in our earlier study, we find that ions such as [UO2 (O)(NO2 )]- and [UO2 (O)(O2 )]- form H2 O adducts, and calculations suggest these species spontaneously rearrange to create dihydroxides.
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- 2021
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8. Collision‐induced dissociation of [UO 2 (NO 3 ) 3 ] − and [UO 2 (NO 3 ) 2 (O 2 )] − and reactions of product ions with H 2 O and O 2
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Amanda R. Bubas, Evan Perez, Michael J. Van Stipdonk, Scott D. Rissler, and Luke J. Metzler
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Collision-induced dissociation ,010405 organic chemistry ,Chemistry ,Electrospray ionization ,010401 analytical chemistry ,Tandem mass spectrometry ,Uranyl ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,Adduct ,chemistry.chemical_compound ,Physical chemistry ,Density functional theory ,Reactivity (chemistry) ,Spectroscopy - Abstract
Electrospray ionization (ESI) can produce a wide range of gas-phase uranyl (UO2 2+ ) complexes for tandem mass spectrometry studies of intrinsic structure and reactivity. We describe here the formation and collision-induced dissociation (CID) of [UO2 (NO3 )3 ]- and [UO2 (NO3 )2 (O2 )]- . Multiple-stage CID experiments reveal that the complexes dissociate in reactions that involve elimination of O2 , NO2 , or NO3 , and subsequent reactions of interesting uranyl-oxo product ions with (neutral) H2 O and/or O2 were investigated. Density functional theory (DFT) calculations reproduce experimental results and show that dissociation of nitrate ligands, with ejection of neutral NO2 , is favored for both [UO2 (NO3 )3 ]- and [UO2 (NO3 )2 (O2 )]- . DFT calculations also suggest that H2 O adducts to products such as [UO2 (O)(NO3 )]- spontaneously rearrange to create dihydroxides and that addition of O2 is favored over addition of H2 O to formally U(V) species.
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- 2021
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9. Characterization of Uranyl Coordinated by Equatorial Oxygen: Oxo in UO3 versus Oxyl in UO3+
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John K. Gibson, Jiwen Jian, Rémi Maurice, Jonathan Martens, Giel Berden, Jos Oomens, Amanda R. Bubas, Michael J. Van Stipdonk, Eric Renault, Irena Tatosian, Chimie Et Interdisciplinarité : Synthèse, Analyse, Modélisation (CEISAM), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC), Laboratoire de physique subatomique et des technologies associées (SUBATECH), Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-IMT Atlantique Bretagne-Pays de la Loire (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT), and Molecular Spectroscopy (HIMS, FNWI)
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Denticity ,Trans effect ,02 engineering and technology ,010402 general chemistry ,Atomic ,01 natural sciences ,Medicinal chemistry ,Dissociation (chemistry) ,chemistry.chemical_compound ,Particle and Plasma Physics ,Theoretical and Computational Chemistry ,Uranium trioxide ,Nuclear ,Physical and Theoretical Chemistry ,[PHYS]Physics [physics] ,FELIX Molecular Structure and Dynamics ,Ligand ,Molecular ,021001 nanoscience & nanotechnology ,Uranyl ,0104 chemical sciences ,Uranyl nitrate ,chemistry ,Uranyl hydroxide ,0210 nano-technology ,Physical Chemistry (incl. Structural) - Abstract
Uranium trioxide, UO3, has a T-shaped structure with bent uranyl, UO22+, coordinated by an equatorial oxo, O2-. The structure of cation UO3+ is similar but with an equatorial oxyl, O center dot-. Neutral and cationic uranium trioxide coordinated by nitrates were characterized by collision induced dissociation (CID), infrared multiple-photon dissociation (IRMPD) spectroscopy, and density functional theory. CID of uranyl nitrate, [UO2 (NO3)3]- (complex A1), eliminates NO2 to produce nitrate-coordinated UO3+, [UO2 (O. )(NO3)2]-(B1), which ejects NO3 to yield UO3 in [UO2 (O)(NO3)]- (C1). Finally, C1 associates with H2O to afford uranyl hydroxide in [UO2(OH)2 (NO3)]- (D1). IRMPD of B1, C1, and D1 confirms uranyl equatorially coordinated by nitrate(s) along with the following ligands: (B1) radical oxyl O.-; (C1) oxo O2-; and (D1) two hydroxyls, OH- . As the nitrates are bidentate, the equatorial coordination is six in A1, five in B1, four in D1, and three in C1. Ligand congestion in low-coordinate C1 suggests orbital-directed bonding. Hydrolysis of the equatorial oxo in C1 epitomizes the inverse trans influence in UO3, which is uranyl with inert axial oxos and a reactive equatorial oxo. The uranyl v3 IR frequencies indicate the following donor ordering: O2- [best donor] >> O.- > OH-> NO3-.
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- 2021
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10. Collision‐induced dissociation of [U VI O 2 (ClO 4 )] + revisited: Production of [U VI O 2 (Cl)] + and subsequent hydrolysis to create [U VI O 2 (OH)] +
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Irena Tatosian, Michael J. Van Stipdonk, and Anna Iacovino
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Collision-induced dissociation ,Chemistry ,Electrospray ionization ,010401 analytical chemistry ,Organic Chemistry ,010402 general chemistry ,Mass spectrometry ,Tandem mass spectrometry ,01 natural sciences ,Medicinal chemistry ,Dissociation (chemistry) ,0104 chemical sciences ,Analytical Chemistry ,Ion ,Molecule ,Quadrupole ion trap ,Spectroscopy - Abstract
RATIONALE In a previous study [Rapid Commun Mass Spectrom. 2004;18:3028-3034], collision-induced dissociation (CID) of [UVI O2 (ClO4 )]+ appeared to be influenced by the high levels of background H2 O in a quadrupole ion trap. The CID of the same species was re-examined here with the goal of determining whether additional, previously obscured dissociation pathways would be revealed under conditions in which the level of background H2 O was lower. METHODS Water- and methanol-coordinated [UVI O2 (ClO4 )]+ precursor ions were generated by electrospray ionization. Multiple-stage tandem mass spectrometry (MSn ) for CID and ion-molecule reaction (IMR) studies was performed using a linear ion trap mass spectrometer. RESULTS Under conditions of low background H2 O, CID of [UVI O2 (ClO4 )]+ generates [UVI O2 (Cl)]+ , presumably by elimination of two O2 molecules. Using low isolation/reaction times, we found that [UVI O2 (Cl)]+ will undergo an IMR with H2 O to generate [UVI O2 (OH)]+ . CONCLUSIONS With lower levels of background H2 O, CID experiments reveal that the intrinsic dissociation pathway for [UVI O2 (ClO4 )]+ leads to [UVI O2 (Cl)]+ , apparently by loss of two O2 molecules. We propose that the results reported in the earlier CID study reflected a two-step process: initial formation of [UVI O2 (Cl)]+ by CID, followed by a very rapid hydrolysis reaction to leave [UVI O2 (OH)]+ .
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- 2018
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11. Creation of [OUF]+ using gas-phase reactions of [UO2(C6F5)]+
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Anna Iacovino, Árpád Somogyi, Amanda R. Bubas, Evan Perez, Theodore A. Corcovilos, Luke J. Metzler, Susan Kline, Irena Tatosian, and Michael J. Van Stipdonk
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Decarboxylation ,Ligand ,Condensed Matter Physics ,Medicinal chemistry ,Dissociation (chemistry) ,Ion ,Hydrolysis ,chemistry.chemical_compound ,chemistry ,Reagent ,Hydroxide ,Ion trap ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy - Abstract
While the strong axial U O bonds confer high stability and inertness to UO22+, it has been shown that the axial oxo ligands can be eliminated or replaced in the gas-phase using collision-induced dissociation (CID) reactions. In this study, CID of the pentafluorobenzoate precursor ion [UO2(O2C–C6F5)]+ was used to produce the organo-uranyl ion [UO2(C6F5)]+ by decarboxylation. Subsequent CID of [UO2(C6F5)]+ created [UO2(F)]+ by fluoride transfer and elimination of C6F4, rather than UO2+ by elimination of pentafluorophenyl radical (as has been observed for similar species). Moreover, upon reaction of [UO2(C6F5)]+ with H2O, apparent substitution of OH for F to create [UO3HC6F4]+ is favored over hydrolysis to produce [UO2(OH)]+ and (neutral) C6F5H. Subsequent CID of [UO3HC6F4]+ generates [UO2(F)]+ and [OUF]+. When [OUF]+ is isolated to react with H2O and O2 in the ion trap, the principal product ions observed are [UO2(F)]+ and [UO2(OH)]+. Experiments conducted with labeled reagent suggest that reaction with H218O leads to exchange of the oxo ligand and incorporation of the 18O label into [OUF]+ while reaction with O2 likely creates [UO2(F)]+. Formation of [UO2(OH)]+ from [OUF]+ is the result of a cascade of reactions, with initial formation of [UO2(F)]+ by reaction with O2, followed by hydrolysis to create the hydroxide species.
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- 2021
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12. Uranyl/12-crown-4 Ether Complexes and Derivatives: Structural Characterization and Isomeric Differentiation
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Michael J. Van Stipdonk, Jonathan Martens, Wan-Lu Li, John K. Gibson, Jos Oomens, Jiwen Jian, Giel Berden, Jun Li, Shu-Xian Hu, and Molecular Spectroscopy (HIMS, FNWI)
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FELIX Molecular Structure and Dynamics ,010405 organic chemistry ,Electrospray ionization ,Infrared spectroscopy ,Ether ,010402 general chemistry ,Uranyl ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,Dication ,Inorganic Chemistry ,chemistry.chemical_compound ,Crystallography ,Chemical bond ,chemistry ,Infrared multiphoton dissociation ,Physical and Theoretical Chemistry - Abstract
The following gas-phase uranyl/12-crown-4 (12C4) complexes were synthesized by electrospray ionization: [UO2(12C4)2]2+ and [UO2(12C4)2(OH)]+. Collision-induced dissociation (CID) of the dication resulted in [UO2(12C4-H)]+ (12C4-H is a 12C4 that has lost one H), which spontaneously adds water to yield [UO2(12C4-H)(H2O)]+. The latter has the same composition as complex [UO2(12C4)(OH)]+ produced by CID of [UO2(12C4)2(OH)]+ but exhibits different reactivity with water. The postulated structures as isomeric [UO2(12C4-H)(H2O)]+ and [UO2(12C4)(OH)]+ were confirmed by comparison of infrared multiphoton dissociation (IRMPD) spectra with computed spectra. The structure of [UO2(12C4-H)]+ corresponds to cleavage of a C–O bond in the 12C4 ring, with formation of a discrete U–Oeq bond and equatorial coordination by three intact ether moieties. Comparison of IRMPD and computed IR spectra furthermore enabled assignment of the structures of the other complexes. Theoretical studies of the chemical bonding features of the complexes provide an understanding of their stabilities and reactivities. The results reveal bonding and structures of the uranyl/12C4 complexes and demonstrate the synthesis and identification of two different isomers of gas-phase uranyl coordination complexes.
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- 2018
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13. Gas Phase Reactions of Ions Derived from Anionic Uranyl Formate and Uranyl Acetate Complexes
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Evan Perez, Cassandra Hanley, Nevo Polonsky, Stephen Koehler, Michael J. Van Stipdonk, and Jordan Pestok
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Collision-induced dissociation ,Decarboxylation ,Electrospray ionization ,010401 analytical chemistry ,Inorganic chemistry ,Uranyl acetate ,010402 general chemistry ,Uranyl ,01 natural sciences ,Medicinal chemistry ,Dissociation (chemistry) ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Structural Biology ,Uranyl formate ,Formate ,Spectroscopy - Abstract
The speciation and reactivity of uranium are topics of sustained interest because of their importance to the development of nuclear fuel processing methods, and a more complete understanding of the factors that govern the mobility and fate of the element in the environment. Tandem mass spectrometry can be used to examine the intrinsic reactivity (i.e., free from influence of solvent and other condensed phase effects) of a wide range of metal ion complexes in a species-specific fashion. Here, electrospray ionization, collision-induced dissociation, and gas-phase ion-molecule reactions were used to create and characterize ions derived from precursors composed of uranyl cation (UVIO22+) coordinated by formate or acetate ligands. Anionic complexes containing UVIO22+ and formate ligands fragment by decarboxylation and elimination of CH2=O, ultimately to produce an oxo-hydride species [UVIO2(O)(H)]-. Cationic species ultimately dissociate to make [UVIO2(OH)]+. Anionic complexes containing acetate ligands exhibit an initial loss of acetyloxyl radical, CH3CO2•, with associated reduction of uranyl to UVO2+. Subsequent CID steps cause elimination of CO2 and CH4, ultimately to produce [UVO2(O)]-. Loss of CH4 occurs by an intra-complex H+ transfer process that leaves UVO2+ coordinated by acetate and acetate enolate ligands. A subsequent dissociation step causes elimination of CH2=C=O to leave [UVO2(O)]-. Elimination of CH4 is also observed as a result of hydrolysis caused by ion-molecule reaction with H2O. The reactions of other anionic species with gas-phase H2O create hydroxyl products, presumably through the elimination of H2. Graphical Abstract ᅟ.
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- 2016
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14. Collision‐induced dissociation of uranyl‐methoxide and uranyl‐ethoxide cations: Formation of UO 2 H + and uranyl‐alkyl product ions
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Patricia A. Mihm, Michael J. Van Stipdonk, Evan Perez, Theodore A. Corcovilos, Jordan Pestok, and Cassandra Hanley
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Collision-induced dissociation ,010401 analytical chemistry ,Organic Chemistry ,Analytical chemistry ,Methoxide ,010402 general chemistry ,Tandem mass spectrometry ,Mass spectrometry ,Uranyl ,01 natural sciences ,Medicinal chemistry ,Dissociation (chemistry) ,0104 chemical sciences ,Analytical Chemistry ,chemistry.chemical_compound ,chemistry ,Fragmentation (mass spectrometry) ,Ion trap ,Spectroscopy - Abstract
RATIONALE The lower levels of adventitious H2 O in a linear ion trap allow the fragmentation reactions of [UO2 OCH3 ](+) and [UO2 OCH2 CH3 ](+) to be examined in detail. METHODS Methanol- and ethanol-coordinated UO2 (2+) -alkoxide precursors were generated by electrospray ionization (ESI). Multiple-stage tandem mass spectrometry (MS(n) ) and collision-induced dissociation (CID) were performed using a linear ion trap mass spectrometer. RESULTS CID of [UO2 OCH3 (CH3 OH)n ](+) and [UO2 OCH2 CH3 (CH3 CH2 OH)n ](+) , n = 3 and 2, causes loss of neutral alcohol ligands, leading ultimately to bare uranyl-alkoxide species. Comparison of 'native' to deuterium-labeled precursors reveals dissociation pathways not previously observed in 3-D ion trap experiments. CONCLUSIONS UO2 H(+) is generated from [UO2 OCH3 ](+) by transfer of H from the methyl group. Variable-energy and variable-time CID experiments suggest that the apparent threshold for production of UO2 H(+) is lower than for UO2 (+) , but the pathway is kinetically less favored for the former than for the latter. CID experiments reveal that [UO2 OCH2 CH3 ](+) dissociates to generate [UO2 CH3 ](+) , a relatively rare species with a U-C bond, and [UO2 (O = CH2 )](+) .
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- 2016
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15. Dissociation of gas-phase, doubly-charged uranyl-acetone complexes by collisional activation and infrared photodissociation
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Dean Martin, Alexandra Plaviak, Benjamin J. Bythell, Catherine O’Malley, Patricia A. Mihm, John K. Gibson, Jordan Pestok, Michael J. Van Stipdonk, Theodore A. Corcovilos, and Cassandra Hanley
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010401 analytical chemistry ,Photodissociation ,Analytical chemistry ,010402 general chemistry ,Photochemistry ,Mass spectrometry ,Uranyl ,Condensed Matter Physics ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Fragmentation (mass spectrometry) ,Infrared multiphoton dissociation ,Quadrupole ion trap ,Physical and Theoretical Chemistry ,Instrumentation ,Ion cyclotron resonance ,Spectroscopy - Abstract
Past studies of fragmentation reactions of doubly-charged uranyl (UO22+) complexes have been impeded by very rapid water addition reactions that cause H2O adducts to dominate product ion spectra. The fragmentation of uranyl-acetone (aco) complexes ([UO2(aco)n]2+, n = 1–5), generated by electrospray ionization, is revisited here using: (a) collisional activation in a linear ion trap (LIT) mass spectrometer in which the level of background H2O is significantly lower, and (b) infrared multiple-photon photodissociation (IRMPD, 10.6 μm) in the LIT and a Fourier-transform ion cyclotron resonance (FT-ICR) mass spectrometer. Lower levels of adventitious H2O in the LIT provided access to fragmentation of [UO2(aco)n]2+, n = 1–5. For n = 3–5, direct elimination of aco ligands is the favored fragmentation pathway. For n = 1 and 2, charge reduction reactions are dominant. For [UO2(aco)2]2+, the most abundant product ion is [UO2(aco)]+, while UO2+ is observed following collision-induced dissociation (CID) of [UO2(aco)]2+. Minor peaks corresponding to ligated [UO2OH]+ are also observed. The IRMPD experiments in the FT-ICR yielded highly accurate mass measurements that confirm composition assignments, and shed light on dissociation reactions in a gas-phase environment that is entirely free of adventitious H2O. For [UO2(aco)n]2+, n = 3–5, the primary photodissociation channel is direct aco elimination, along with charge-reduction pathways that involve intra-complex proton transfer and formation of species that contain enolate ligands. Similar pathways are observed for IRMPD measurements in the LIT.
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- 2016
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16. Even-electron [M-H]+ions generated by loss of AgH from argentinated peptides with N-terminal imine groups
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Sandra Osburn, Alexandra Plaviak, Michael J. Van Stipdonk, and Khiry Patterson
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chemistry.chemical_classification ,Electrospray ionization ,010401 analytical chemistry ,Organic Chemistry ,Imine ,Analytical chemistry ,Peptide ,010402 general chemistry ,Tandem mass spectrometry ,Mass spectrometry ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,Analytical Chemistry ,Ion ,chemistry.chemical_compound ,Crystallography ,chemistry ,Quadrupole ion trap ,Spectroscopy - Abstract
Rationale Experiments were performed to probe the creation of apparent even-electron, [M–H]+ ions by CID of Ag-cationized peptides with N-terminal imine groups (Schiff bases). Methods Imine-modified peptides were prepared using condensation reactions with aldehydes. Ag+-cationized precursors were generated by electrospray ionization (ESI). Tandem mass spectrometry (MSn) and collision-induced dissociation (CID) were performed using a linear ion trap mass spectrometer. Results Loss of AgH from peptide [M + Ag]+ ions, at the MS/MS stage, creates closed-shell [M–H]+ ions from imine-modified peptides. Isotope labeling unambiguously identifies the imine C-H group as the source of H eliminated in AgH. Subsequent CID of the [M–H]+ ions generated sequence ions that are analogous to those produced from [M + H]+ ions of the imine-modified peptides. Conclusions Experiments show (a) formation of novel even-electron peptide cations by CID and (b) the extent to which sequence ions (conventional b, a and y ions) are generated from peptides with fixed charge site and thus lacking a conventional mobile proton. Copyright © 2015 John Wiley & Sons, Ltd.
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- 2015
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17. Gas-Phase Tyrosine-to-cysteine Radical Migration in Model Systems
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Sandra Osburn, Victor Ryzhov, Michael Lesslie, and Michael J. Van Stipdonk
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chemistry.chemical_classification ,Spectrometry, Mass, Electrospray Ionization ,Free Radicals ,Collision-induced dissociation ,Chemistry ,Allyl iodide ,Radical ,General Medicine ,Photochemistry ,Medicinal chemistry ,Phase Transition ,Atomic and Molecular Physics, and Optics ,Dissociation (chemistry) ,chemistry.chemical_compound ,Models, Chemical ,Radical ion ,Intramolecular force ,Thiol ,Tyrosine ,Computer Simulation ,Cysteine ,Gases ,Peptides ,Spectroscopy - Abstract
Radical migration, both intramolecular and intermolecular, from the tyrosine phenoxyl radical Tyr(O•) to the cysteine radical Cys(S•) in model peptide systems was observed in the gas phase. Ion–molecule reactions (IMRs) between the radical cation of homotyrosine and propyl thiol resulted in a fast hydrogen atom transfer. In addition, radical cations of the peptide LysTyrCys were formed via two different methods, affording regiospecific production of Tyr(O•) or Cys(S•) radicals. Collision-induced dissociation of these isomeric species displayed evidence of radical migration from the oxygen to sulfur, but not for the reverse process. This was supported by theoretical calculations, which showed the Cys(S•) radical slightly lower in energy than the Tyr(O•) isomer. IMRs of the LysTyrCys radical cation with allyl iodide further confirmed these findings. A mechanism for radical migration involving a proton shuttle by the C-terminal carboxylic group is proposed.
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- 2015
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18. Infrared multiple-photon dissociation spectroscopy of deprotonated 6-hydroxynicotinic acid
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Michael J. Van Stipdonk, Michael J. Kullman, Giel Berden, and Jos Oomens
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chemistry.chemical_classification ,Chemistry ,Carboxylic acid ,Organic Chemistry ,Photodissociation ,Mass spectrometry ,Tautomer ,Dissociation (chemistry) ,Fourier transform ion cyclotron resonance ,Analytical Chemistry ,Computational chemistry ,Density functional theory ,Infrared multiphoton dissociation ,Spectroscopy - Abstract
RATIONALE Hydroxynicotinic acids (2-, 4-, 5- and 6-hydroxy) are widely used in the manufacture of industrial products, and hydroxypyridines are important model systems for study of the tautomerization of N-heterocyclic compounds. Here we determined the gas-phase structure of deprotonated 6-hydroxynicotinic acid (6OHNic). METHODS Anions were generated by electrospray ionization, and isolated and stored in a Fourier transform ion cyclotron resonance mass spectrometer. Infrared (action) spectra were collected by monitoring photodissociation yield versus photon energy. Experimental spectra were then compared with those predicted by density functional theory (DFT) and second-order Moller-Plesset (MP2) perturbation theory calculations. RESULTS For neutral 6OHNic, DFT and MP2 calculations strongly suggest that the 6-pyridone tautomer is favored when solvent effects are included. The lowest energy isomer of deprotonated 6OHNic, in the aqueous or gas phase, is predicted to be the 6-pyridone structure deprotonated by the carboxylic acid group. CONCLUSIONS The deprotonated, 6-pyridone structure is confirmed by comparison of the infrared multiple-photon photodissociation (IRMPD) spectrum in the region of 1100–1900 cm–1 with those predicted using DFT and MP2 calculations. Copyright © 2014 John Wiley & Sons, Ltd.
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- 2014
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19. Computational Investigation of the Dissociation Pathways of Peptides
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Mary C. Sherman, Michael J. Van Stipdonk, and Luke J. Metzler
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Computational chemistry ,Chemistry ,Biophysics ,Dissociation (chemistry) - Published
- 2019
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20. Infrared multiple photon dissociation spectroscopy of group I and group II metal complexes with Boc-hydroxylamine
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Jeffrey D. Steill, Gary S. Groenewold, Jos Oomens, Garold L. Gresham, Ryan P. Dain, and Michael J. Van Stipdonk
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Stereochemistry ,Organic Chemistry ,Photodissociation ,Infrared spectroscopy ,Dissociation (chemistry) ,Fourier transform ion cyclotron resonance ,Analytical Chemistry ,chemistry.chemical_compound ,Crystallography ,Hydroxylamine ,chemistry ,Amide ,Molecule ,Infrared multiphoton dissociation ,Spectroscopy - Abstract
RATIONALE: Hydroxamates are essential growth factors for some microbes, acting primarily as siderophores that solubilize iron for transport into a cell. Here we determined the intrinsic structure of 1:1 complexes between Boc-protected hydroxylamine and group I ([M(L)](+)) and group II ([M(L-H)](+)) cations, where M and L are the cation and ligand, respectively, which are convenient models for the functional unit of hydroxamate siderphores. METHODS: The relevant complex ions were generated by electrospray ionization (ESI) and isolated and stored in a Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometer. Infrared spectra of the isolated complexes were collected by monitoring (infrared) photodissociation yield as a function of photon energy. Experimental spectra were then compared to those predicted by density functional theory (DFT) calculations. RESULTS: The infrared multiple photon dissociation (IRMPD) spectra collected are in good agreement with those predicted to be lowest-energy by DFT. The spectra for the group I complexes contain six resolved absorptions that can be attributed to amide I and II type and hydroxylamine N-OH vibrations. Similar absorptions are observed for the group II cation complexes, with shifts of the amide I and amide II vibrations due to the change in structure with deprotonation of the hydroxylamine group. CONCLUSIONS: IRMPD spectroscopy unequivocally shows that the intrinsic binding mode for the group I cations involves the O atoms of the amide carbonyl and hydroxylamine groups of Boc-hydroxylamine. A similar binding mode is preferred for the group II cations, except that in this case the metal ion is coordinated by the O atom of the deprotonated hydroxylamine group. Copyright (c) 2013 John Wiley & Sons, Ltd.
- Published
- 2013
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21. Cleaving Off Uranyl Oxygens through Chelation: A Mechanistic Study in the Gas Phase
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Jonathan Martens, Ilya Captain, John K. Gibson, Wibe A. de Jong, Teresa M. Eaton, Rebecca J. Abergel, Giel Berden, Jiwen Jian, Michael J. Van Stipdonk, Jos Oomens, Gauthier J.-P. Deblonde, Phuong Diem Dau, and Molecular Spectroscopy (HIMS, FNWI)
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Collision-induced dissociation ,Molecular Structure and Dynamics ,010405 organic chemistry ,Chemistry ,Ligand ,Chemical Engineering ,010402 general chemistry ,Uranyl ,Photochemistry ,Physical Chemistry ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,Inorganic Chemistry ,chemistry.chemical_compound ,Chelation ,Density functional theory ,Infrared multiphoton dissociation ,Inorganic & Nuclear Chemistry ,Physical and Theoretical Chemistry ,Other Chemical Sciences ,Bond cleavage ,Physical Chemistry (incl. Structural) - Abstract
© 2017 American Chemical Society. Recent efforts to activate the strong uranium-oxygen bonds in the dioxo uranyl cation have been limited to single oxo-group activation through either uranyl reduction and functionalization in solution, or by collision induced dissociation (CID) in the gas-phase, using mass spectrometry (MS). Here, we report and investigate the surprising double activation of uranyl by an organic ligand, 3,4,3-LI(CAM), leading to the formation of a formal U6+chelate in the gas-phase. The cleavage of both uranyl oxo bonds was experimentally evidenced by CID, using deuterium and18O isotopic substitutions, and by infrared multiple photon dissociation (IRMPD) spectroscopy. Density functional theory (DFT) computations predict that the overall reaction requires only 132 kJ/mol, with the first oxygen activation entailing about 107 kJ/mol. Combined with analysis of similar, but unreactive ligands, these results shed light on the chelation-driven mechanism of uranyl oxo bond cleavage, demonstrating its dependence on the presence of ligand hydroxyl protons available for direct interactions with the uranyl oxygens.
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- 2017
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22. Roles of Acetone and Diacetone Alcohol in Coordination and Dissociation Reactions of Uranyl Complexes
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Mark S. Gordon, Theresa L. Windus, Daniel Rios, John K. Gibson, Wibe A. de Jong, Michael J. Van Stipdonk, and George Schoendorff
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Protonation ,Uranyl ,Photochemistry ,Medicinal chemistry ,Dissociation (chemistry) ,Acetone ,Inorganic Chemistry ,chemistry.chemical_compound ,Elimination reaction ,Pentanols ,Mesityl oxide ,chemistry ,Pentanones ,Diacetone alcohol ,Alkoxide ,Organometallic Compounds ,Quantum Theory ,Uranium ,Physical and Theoretical Chemistry - Abstract
Combined collision-induced dissociation mass spectrometry experiments with DFT and MP2 calculations were employed to elucidate the molecular structures and energetics of dissociation reactions of uranyl species containing acetone and diacetone alcohol ligands. It is shown that solutions containing diacetone alcohol ligands can produce species with more than five oxygen atoms available for coordination. Calculations confirm that complexes with up to four diacetone alcohol ligands can be energetically stable but that the effective number of atoms coordinating with uranium in the equatorial plane does not exceed five. Water elimination reactions of diacetone alcohol ligands are shown to have two coordination-dependent reaction channels, through formation of mesityl oxide ligands or formation of alkoxide and protonated mesityl oxide species. The present results provide an explanation for the implausible observation of "[UO(2)(ACO)(6,7,8)](2+)" in and observed water-elimination reactions from purportedly uranyl-acetone complexes (Rios, D.; Rutkowski, P. X.; Van Stipdonk, M. J.; Gibson, J. K. Inorg. Chem. 2011, 50, 4781).
- Published
- 2012
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23. IRMPD spectroscopy b(2) ions from protonated tripeptides with 4-aminomethyl benzoic acid residues
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Giel Berden, Samuel P. Molesworth, Michael J. Kullman, Michael J. Van Stipdonk, Jos Oomens, and Molecular Spectroscopy (HIMS, FNWI)
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chemistry.chemical_classification ,Stereochemistry ,Peptide ,Protonation ,Tripeptide ,Condensed Matter Physics ,Dissociation (chemistry) ,Oxazolone ,Residue (chemistry) ,chemistry.chemical_compound ,chemistry ,Organic chemistry ,Infrared multiphoton dissociation ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy ,Benzoic acid - Abstract
Collision-induced dissociation (CID) of the peptide alanine-4-aminomethylbenzoic acid-glycine, A(AMBz)G generates a prominent b(2) ion despite a previous report [ER. Talaty, T.J. Cooper, S.M. Osburn, M.J. Van Stipdonk, Collision-induced dissociation of protonated tetrapeptides containing beta-alanine, gamma-aminobutyric acid, e-aminocaproic acid or 4-aminomethylbenzoic acid residues, Rapid Commun. Mass Spectrom. 20 (2006) 3443-3455] which showed that incorporation of the aromatic amino acid into a peptide sequence inhibits generation of b(n) ions formed by cleavage to the immediate C-terminal side of the residue. Infrared multiple photon dissociation (IRMPD) spectroscopy and density functional theory (DFT) calculations suggest that the b(2) ion generated from A(AMBz)G has an acylium structure. The b2 ion generated from (AMBz)AG, in which the aromatic residue is situated at the amino-terminus, is instead a conventional oxazolone. (c) 2012 Elsevier B.V. All rights reserved.
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- 2012
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24. Electron transfer dissociation of dipositive uranyl and plutonyl coordination complexes
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Daniel Rios, David K. Shuh, John K. Gibson, Travis H. Bray, Philip X. Rutkowski, and Michael J. Van Stipdonk
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Ligand ,Inorganic chemistry ,Plutonyl ,Uranyl ,Medicinal chemistry ,Dissociation (chemistry) ,Electron-transfer dissociation ,Metal ,chemistry.chemical_compound ,chemistry ,Oxidation state ,visual_art ,visual_art.visual_art_medium ,Hydroxide ,Spectroscopy - Abstract
Reported here is a comparison of electron transfer dissociation (ETD) and collision-induced dissociation (CID) of solvent-coordinated dipositive uranyl and plutonyl ions generated by electrospray ionization. Fundamental differences between the ETD and CID processes are apparent, as are differences between the intrinsic chemistries of uranyl and plutonyl. Reduction of both charge and oxidation state, which is inherent in ETD activation of [An(VI) O(2) (CH(3) COCH(3) )(4) ](2+) , [An(VI) O(2) (CH(3) CN)(4) ](2) , [U(VI) O(2) (CH(3) COCH(3) )(5) ](2+) and [U(VI) O(2) (CH(3) CN)(5) ](2+) (An = U or Pu), is accompanied by ligand loss. Resulting low-coordinate uranyl(V) complexes add O(2) , whereas plutonyl(V) complexes do not. In contrast, CID of the same complexes generates predominantly doubly-charged products through loss of coordinating ligands. Singly-charged CID products of [U(VI) O(2) (CH(3) COCH(3) )(4,5) ](2+) , [U(VI) O(2) (CH(3) CN)(4,5) ](2+) and [Pu(VI) O(2) (CH(3) CN)(4) ](2+) retain the hexavalent metal oxidation state with the addition of hydroxide or acetone enolate anion ligands. However, CID of [Pu(VI) O(2) (CH(3) COCH(3) )(4) ](2+) generates monopositive plutonyl(V) complexes, reflecting relatively more facile reduction of Pu(VI) to Pu(V).
- Published
- 2011
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25. Infrared multiple-photon dissociation spectroscopy of group II metal complexes with salicylate
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Jeffrey D. Steill, Ryan P. Dain, Michael J. Van Stipdonk, Garold L. Gresham, Gary S. Groenewold, and Jos Oomens
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chemistry.chemical_classification ,Chemistry ,Carboxylic acid ,Organic Chemistry ,Inorganic chemistry ,Infrared spectroscopy ,Tandem mass spectrometry ,Mass spectrometry ,Dissociation (chemistry) ,Analytical Chemistry ,chemistry.chemical_compound ,Crystallography ,Carboxylate ,Ion trap ,Infrared multiphoton dissociation ,Spectroscopy - Abstract
Ion trap tandem mass spectrometry with collision-induced dissociation, and the combination of infrared multiple-photon dissociation (IRMPD) spectroscopy and density functional theory (DFT) calculations, were used to characterize singly charged, 1: 1 complexes of Ca2+, Sr2+ and Ba2+ with salicylate. For each metal-salicylate complex, the CID pathways are: (a) elimination of CO2 and (b) formation of [MOH](+) where M = Ca2+, Sr2+ or Ba2+. DFT calculations predict three minima for the cation-salicylate complexes which differ in the mode of metal binding. In the first, the metal ion is coordinated by O atoms of the (neutral) phenol and carboxylate groups of salicylate. In the second, the cation is coordinated by phenoxide and (neutral) carboxylic acid groups. The third mode involves coordination by the carboxylate group alone. The infrared spectrum for the metal-salicylate complexes contains a number of absorptions between 1000 and 1650 cm(-1), and the best correlation between theoretical and experimental spectra is found for the structure that features coordination of the metal ion by phenoxide and the carbonyl O of the carboxylic acid group, consistent with the calculated energies for the respective species. Copyright (C) 2011 John Wiley & Sons, Ltd.
- Published
- 2011
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26. Gas-Phase Coordination Complexes of Dipositive Plutonyl, PuO22+: Chemical Diversity Across the Actinyl Series
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John K. Gibson, Philip X. Rutkowski, Daniel Rios, and Michael J. Van Stipdonk
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Inorganic Chemistry ,chemistry.chemical_compound ,Chemistry ,Electrospray ionization ,Inorganic chemistry ,Acetone ,Plutonyl ,Physical and Theoretical Chemistry ,Quadrupole ion trap ,Acetonitrile ,Uranyl ,Dissociation (chemistry) ,Ion - Abstract
We report the first transmission of solvent-coordinated dipositive plutonyl ion, Pu(VI)O(2)(2+), from solution to the gas phase by electrospray ionization (ESI) of plutonyl solutions in water/acetone and water/acetonitrile. ESI of plutonyl and uranyl solutions produced the isolable gas-phase complexes, [An(VI)O(2)(CH(3)COCH(3))(4,5,6)](2+), [An(VI)O(2)(CH(3)COCH(3))(3)(H(2)O)](2+), and [An(VI)O(2)(CH(3)CN)(4)](2+); additional complex compositions were observed for uranyl. In accord with relative actinyl stabilities, U(VI)O(2)(2+)Pu(VI)O(2)(2+)Np(VI)O(2)(2+), the yields of plutonyl complexes were about an order of magnitude less than those of uranyl, and dipositive neptunyl complexes were not observed. Collision-induced dissociation (CID) of the dipositive coordination complexes in a quadrupole ion trap produced doubly- and singly-charged fragment ions; the fragmentation products reveal differences in underlying chemistries of plutonyl and uranyl, including the lower stability of Pu(VI) as compared with U(VI). Particularly notable was the distinctive CID fragment ion, [Pu(IV)(OH)(3)](+) from [Pu(VI)O(2)(CH(3)COCH(3))(6)](2+), where the plutonyl structure has been disrupted and the tetravalent plutonium hydroxide produced; this process was not observed for uranyl.
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- 2011
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27. The gas-phase bis-uranyl nitrate complex [(UO2)2(NO3)5]-: Infrared spectrum and structure
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Jos Oomens, Michael E. McIlwain, Michael J. Van Stipdonk, Gary S. Groenewold, Wibe A. de Jong, and Molecular Spectroscopy (HIMS, FNWI)
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Denticity ,Inorganic chemistry ,Infrared spectroscopy ,Condensed Matter Physics ,Uranyl ,Dissociation (chemistry) ,Crystallography ,chemistry.chemical_compound ,Nitrate ,chemistry ,Uranyl nitrate ,Density functional theory ,Infrared multiphoton dissociation ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy - Abstract
The infrared spectrum of the bis-uranyl nitrate complex [(UO(2))(2)(NO(3))(5)](-) was measured in the gas phase using multiple photon dissociation (IRMPD). Intense absorptions corresponding to the nitrate symmetric and asymmetric vibrations, and the uranyl asymmetric vibration were observed. The nitrate nu(3) vibrations indicate the presence of nitrate in a bridging configuration bound to both uranyl cations, and probably two distinct pendant nitrates in the complex. The coordination environment of the nitrate ligands and the uranyl cations were compared to those in the mono-uranyl complex. Overall, the uranyl cation is more loosely coordinated in the bis-uranyl complex [(UO(2))(2)(NO(3))(5)](-) compared to the mono-complex [UO(2)(NO(3))(3)](-), as indicated by a higher O-U-O asymmetric stretching (nu(3)) frequency. However, the pendant nitrate ligands are more strongly bound in the bis-complex than they are in the mono-uranyl complex, as indicated by the nu(3) frequencies of the pendant nitrate, which are split into nitrosyl and O-N-O vibrations as a result of bidentate coordination. These phenomena are consistent with lower electron density donation per uranyl by the nitrate bridging two uranyl centers compared to that of a pendant nitrate in the mono-uranyl complex. The lowest energy structure predicted by density functional theory (B3LYP functional) calculations was one in which the two uranyl molecules bridged by a single nitrate coordinated in a bis-bidentate fashion. Each uranyl molecule was coordinated by two pendant nitrate ligands. The corresponding vibrational spectrum was in excellent agreement with the IRMPD measurement, confirming the structural assignment. (C) 2011 Elsevier B.V. All rights reserved.
- Published
- 2011
28. Vibrational spectra of discrete UO22+ halide complexes in the gas phase
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Wibe A. de Jong, Michael J. Van Stipdonk, Jos Oomens, Michael E. McIlwain, Garold L. Gresham, and Gary S. Groenewold
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chemistry.chemical_classification ,Inorganic chemistry ,Halide ,Infrared spectroscopy ,Condensed Matter Physics ,Uranyl ,Bond-dissociation energy ,Dissociation (chemistry) ,Coordination complex ,chemistry.chemical_compound ,Crystallography ,chemistry ,Molecule ,Infrared multiphoton dissociation ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy - Abstract
The intrinsic binding of halide ions to the metal center in the uranyl molecule is a topic of ongoing research interest in both the actinide separations and theoretical communities. Investigations of structure in the condensed phases is frequently obfuscated by solvent interactions, that can alter ligand binding and spectroscopic properties. The approach taken in this study is to move the uranyl halide complexes into the gas phase where they are free from solvent interactions, and then interrogate their vibrational spectroscopy using infrared multiple photon dissociation (IRMPD). The spectra of cationic coordination complexes having the composition [UO2(X)(ACO)3]+ (X = F, Cl, Br and I; ACO = acetone) were acquired using electrospray for ion formation, and monitoring the ion signal from the photoelimination of ACO ligands. The studies showed that the asymmetric v3 UO2 frequency was insensitive to halide identity as X was varied from Cl to I, suggesting that in these pseudo octahedral complexes, changing the nucleophilicity of the halide did not appreciably alter the binding in the complex. The v3 peak in the spectrum of the F-containing complex was ~ 10 cm-1 lower indicating stronger coordination in this complex. Similarly the ACO carbonyl stretches showed that the C=O frequency wasmore » relatively insensitive to the identity of the halide, although a modest shift to the blue was seen for the complexes with the more nucleophilic anions, consistent with the idea that they loosen solvent binding. Surprisingly, the v1 stretch was activated when the softer anions Cl, Br and I were present in the complexes. IR studies of the anionic complexes were conducted by measuring the v3 UO2 frequencies of [UO2X3]-, where X = Cl-, Br- and I-. The trifluoro complex could not be photodissociated. In these negatively charged complexes, the UO2 v3 values decreased with increasing anion nucleophilicity. This observation was consistent with DFT calculations that indicated that dissociation energy decreased on the order F > Cl > Br > I.« less
- Published
- 2010
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29. Structure of [M + H − H2O]+ from Protonated Tetraglycine Revealed by Tandem Mass Spectrometry and IRMPD Spectroscopy
- Author
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Stephanie S. Curtice, Jos Oomens, Gary S. Groenewold, Michael J. Van Stipdonk, Benjamin J. Bythell, Béla Paizs, Ryan P. Dain, and Jeffrey D. Steill
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Models, Molecular ,Spectrophotometry, Infrared ,Chemistry ,Molecular Conformation ,Analytical chemistry ,Water ,Infrared spectroscopy ,Protonation ,Tandem mass spectrometry ,Dissociation (chemistry) ,Ion ,Crystallography ,Tandem Mass Spectrometry ,Quantum Theory ,Molecule ,Infrared multiphoton dissociation ,Protons ,Physical and Theoretical Chemistry ,Spectroscopy ,Oligopeptides - Abstract
Multiple-stage tandem mass spectrometry and collision-induced dissociation were used to investigate loss of H(2)O or CH(3)OH from protonated versions of GGGX (where X = G, A, and V), GGGGG, and the methyl esters of these peptides. In addition, wavelength-selective infrared multiple photon dissociation was used to characterize the [M + H - H(2)O](+) product derived from protonated GGGG and the major MS(3) fragment, [M + H - H(2)O - 29](+) of this peak. Consistent with the earlier work [ Ballard , K. D. ; Gaskell , S. J. J. Am. Soc. Mass Spectrom. 1993 , 4 , 477 - 481 ; Reid , G. E. ; Simpson , R. J. ; O'Hair , R. A. J. Int. J. Mass Spectrom. 1999 , 190/191 , 209 -230 ], CID experiments show that [M + H - H(2)O](+) is the dominant peak generated from both protonated GGGG and protonated GGGG-OMe. This strongly suggests that the loss of the H(2)O molecule occurs from a position other than the C-terminal free acid and that the product does not correspond to formation of the b(4) ion. Subsequent CID of [M + H - H(2)O](+) supports this proposal by resulting in a major product that is 29 mass units less than the precursor ion. This is consistent with loss of HN horizontal lineCH(2) rather than loss of carbon monoxide (28 mass units), which is characteristic of oxazolone-type b(n) ions. Comparison between experimental and theoretical infrared spectra for a group of possible structures confirms that the [M + H - H(2)O](+) peak is not a substituted oxazolone but instead suggests formation of an ion that features a five-membered ring along the peptide backbone, close to the amino terminus. Additionally, transition structure calculations and comparison of theoretical and experimental spectra of the [M + H - H(2)O - 29](+) peak also support this proposal.
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- 2010
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30. Infrared multiple photon dissociation spectroscopy of sodium and potassium chlorate anions
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Ryan P. Dain, Christopher M. Leavitt, Jeffrey D. Steill, Michael J. Van Stipdonk, Jos Oomens, and Gary S. Groenewold
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Denticity ,Organic Chemistry ,Chlorate ,Potassium chlorate ,Analytical chemistry ,Infrared spectroscopy ,Dissociation (chemistry) ,Analytical Chemistry ,chemistry.chemical_compound ,chemistry ,Physical chemistry ,Density functional theory ,Infrared multiphoton dissociation ,Spectroscopy - Abstract
The structures of gas-phase, metal chlorate anions with the formula [M(ClO(3))(2)](-), M = Na and K, were determined using tandem mass spectrometry and infrared multiple photon dissociation (IRMPD) spectroscopy. Structural assignments for both anions are based on comparisons of the experimental vibrational spectra for the two species with those predicted by density functional theory (DFT) and involve conformations that feature either bidentate or tridentate coordination of the cation by chlorate. Our results strongly suggest that a structure in which both chlorate anions are bidentate ligands is preferred for [Na(ClO(3))(2)](-). However, for [K(ClO(3))(2)](-) the best agreement between experimental and theoretical spectra is obtained from a composite of predicted spectra for which the chlorate anions are either both bidentate or both tridentate ligands. In general, we find that the overall accuracy of DFT calculations for prediction of IR spectra is dependent on both functional and basis set, with best agreement achieved using frequencies generated at the B3LYP/6-311+g(3df) level of theory.
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- 2009
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31. Infrared spectrum of potassium-cationized triethylphosphate generated using tandem mass spectrometry and infrared multiple photon dissociation
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Jos Oomens, Ryan P. Dain, Jeffrey D. Steill, Christopher M. Leavitt, Gary S. Groenewold, and Michael J. Van Stipdonk
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Spectrophotometry, Infrared ,Infrared ,Chemistry ,Organic Chemistry ,Photodissociation ,Analytical chemistry ,Infrared spectroscopy ,Mass spectrometry ,Tandem mass spectrometry ,Dissociation (chemistry) ,Analytical Chemistry ,Organophosphorus Compounds ,Tandem Mass Spectrometry ,Density functional theory ,Spectroscopy - Abstract
Tandem mass spectrometry and wavelength-selective infrared photodissociation were used to generate an infrared spectrum of gas-phase triethylphosphate cationized by attachment of K+. Prominent absorptions were observed in the region of 900 to 1300 cm(-1) that are characteristic of phosphate P=O and P-O-R stretches. The relative positions and intensities of the IR absorptions were reproduced well by density functional theory (DFT) calculations performed using the B3LYP functional and the 6-31+G(d), 6-311+G(d,p) and 6-311++G(3df,2pd) basis sets. Because of good correspondence between experiment and theory for the cation, DFT was then used to generate a theoretical spectrum for neutral triethylphosphate, which in turn accurately reproduces the IR spectrum of the neat liquid when solvent effects are included in the calculations. Copyright (C) 2009 John Wiley & Sons, Ltd.
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- 2009
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32. Spectroscopic evidence for mobilization of amide position protons during CID of model peptide ions
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Gary S. Groenewold, Jeffrey D. Steill, Christopher M. Leavitt, Jos Oomens, Michael J. Van Stipdonk, and Samuel P. Molesworth
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Models, Molecular ,Spectrophotometry, Infrared ,Stereochemistry ,Glycine ,Protonation ,010402 general chemistry ,Niacin ,01 natural sciences ,Mass Spectrometry ,Dissociation (chemistry) ,Oxazolone ,chemistry.chemical_compound ,Fragmentation (mass spectrometry) ,Structural Biology ,Amide ,Pyridine ,Infrared multiphoton dissociation ,Spectroscopy ,Dipeptide ,010401 analytical chemistry ,Amides ,0104 chemical sciences ,Models, Chemical ,chemistry ,Protons ,Peptides - Abstract
Infrared multiple photon dissociation (IRMPD) spectroscopy was used to study formation of b2+ from nicotinyl-glycine-glycine-methyl ester (NicGGOMe). IRMPD shows that NicGGOMe is protonated at the pyridine ring of the nicotinyl group, and more importantly, that b2+ from NicGGOMe is not protonated at the oxazolone ring, as would be expected if the species were generated on the conventional bn+/yn+ oxazolone pathway, but at the pyridine ring instead. IRMPD data support a hypothesis that formation of b2+ from NicGGOMe involves mobilization and transfer of an amide position proton during the fragmentation reaction.
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- 2009
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33. Addition of H2O and O2 to Acetone and Dimethylsulfoxide Ligated Uranyl(V) Dioxocations
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Christopher M. Leavitt, Michael J. Van Stipdonk, Mamadou S. Diallo, Vyacheslav S. Bryantsev, Gary S. Groenewold, Wibe A. de Jong, and William A. Goddard
- Subjects
Ligand ,Electrospray ionization ,Inorganic chemistry ,Mass spectrometry ,Uranyl ,Medicinal chemistry ,Dissociation (chemistry) ,Ion ,Metal ,Chemical kinetics ,chemistry.chemical_compound ,chemistry ,visual_art ,visual_art.visual_art_medium ,Physical and Theoretical Chemistry - Abstract
Gas-phase complexes of the formula [UO_2(lig)]^+ (lig = acetone (aco) or dimethylsulfoxide (dmso)) were generated by electrospray ionization (ESI) and studied by tandem ion-trap mass spectrometry to determine the general effect of ligand charge donation on the reactivity of UO_2^+ with respect to water and dioxygen. The original hypothesis that addition of O_2 is enhanced by strong σ-donor ligands bound to UO_2^+ is supported by results from competitive collision-induced dissociation (CID) experiments, which show near exclusive loss of H_2O from [UO_2(dmso)(H_2O)(O_2)]^+, whereas both H_2O and O_2 are eliminated from the corresponding [UO_2(aco)(H_2O)(O_2)]^+ species. Ligand-addition reaction rates were investigated by monitoring precursor and product ion intensities as a function of ion storage time in the ion-trap mass spectrometer: these experiments suggest that the association of dioxygen to the UO_2^+ complex is enhanced when the more basic dmso ligand was coordinated to the metal complex. Conversely, addition of H_2O is favored for the analogous complex ion that contains an aco ligand. Experimental rate measurements are supported by density function theory calculations of relative energies, which show stronger bonds between UO_2^+ and O_2 when dmso is the coordinating ligand, whereas bonds to H_2O are stronger for the aco complex.
- Published
- 2009
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34. Sequence-Scrambling Fragmentation Pathways of Protonated Peptides
- Author
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Sandra Osburn, Todd D. Williams, Béla Paizs, Alex G. Harrison, Sándor Suhai, Christian Bleiholder, and Michael J. Van Stipdonk
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Surface Properties ,Stereochemistry ,Dimer ,Population ,Analytical chemistry ,Protonation ,Tandem mass spectrometry ,Peptides, Cyclic ,Biochemistry ,Catalysis ,Dissociation (chemistry) ,Ion ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Fragmentation (mass spectrometry) ,Tandem Mass Spectrometry ,Amino Acid Sequence ,education ,education.field_of_study ,Nitrogen Isotopes ,General Chemistry ,chemistry ,Thermodynamics ,Density functional theory ,Protons ,Oligopeptides - Abstract
The gas-phase structures and fragmentation pathways of the N-terminal b and a fragments of YAGFL-NH(2), AGLFY-NH(2), GFLYA-NH(2), FLYAG-NH(2), and LYAGF-NH(2) were investigated using collision-induced dissociation (CID) and detailed molecular mechanics and density functional theory (DFT) calculations. Our combined experimental and theoretical approach allows probing of the scrambling and rearrangement reactions that take place in CID of b and a ions. It is shown that low-energy CID of the b(5) fragments of the above peptides produces nearly the same dissociation patterns. Furthermore, CID of protonated cyclo-(YAGFL) generates the same fragments with nearly identical ion abundances when similar experimental conditions are applied. This suggests that rapid cyclization of the primarily linear b(5) ions takes place and that the CID spectrum is indeed determined by the fragmentation behavior of the cyclic isomer. This can open up at various amide bonds, and its fragmentation behavior can be understood only by assuming a multitude of fragmenting linear structures. Our computational results fully support this cyclization-reopening mechanism by showing that protonated cyclo-(YAGFL) is energetically favored over the linear b(5) isomers. Furthermore, the cyclization-reopening transition structures are energetically less demanding than those of conventional bond-breaking reactions, allowing fast interconversion among the cyclic and linear isomers. This chemistry can lead in principle to complete loss of sequence information upon CID, as documented for the b(5) ion of FLYAG-NH(2). CID of the a(5) ions of the above peptides produces fragment ion distributions that can be explained by assuming b-type scrambling of their parent population and a --> a*-type rearrangement pathways ( Vachet , R. W. , Bishop , B. M. , Erickson , B. W. , and Glish , G. L. J. Am. Chem. Soc. 1997, 119, 5481 ). While a ions easily undergo cyclization, the resulting macrocycle predominantly reopens to regenerate the original linear structure. Computational data indicate that the a --> a*-type rearrangement pathways of the linear a isomers involve post-cleavage proton-bound dimer intermediates in which the fragments reassociate and the originally C-terminal fragment is transferred to the N-terminus.
- Published
- 2008
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35. Generation and collision-induced dissociation of ammonium tetrafluoroborate cluster ions
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Michael J. Van Stipdonk and Ryan P. Dain
- Subjects
Tetrafluoroborate ,Collision-induced dissociation ,Chemistry ,Electrospray ionization ,Organic Chemistry ,Analytical chemistry ,Tandem mass spectrometry ,Dissociation (chemistry) ,Analytical Chemistry ,Ion ,chemistry.chemical_compound ,Crystallography ,Fragmentation (mass spectrometry) ,Cluster (physics) ,Spectroscopy - Abstract
Singly and doubly charged cluster ions of ammonium tetrafluoroborate (NH4BF4) with general formula [(NH4BF4)nNH4]+ and [(NH4BF4)m(NH4)2]2+, respectively, were generated by electrospray ionization (ESI) and their fragmentation examined using collision-induced dissociation (CID) and ion-trap tandem mass spectrometry. CID of [(NH4BF4)nNH4]+ caused the loss of one or more neutral NH4BF4 units. The n = 2 cluster, [(NH4BF4)2NH4]+, was unique in that it also exhibited a dissociation pathway in which HBF4 was eliminated to create [(NH4BF4)(NH3)NH4]+. Dissociation of [(NH4BF4)m(NH4)2]2+ occurred through two general pathways: (a) 'fission' to produce singly charged cluster ions and (b) elimination of one or more neutral NH4BF4 units to leave doubly charged product ions. CID profiles, and measurements of changing precursor and product ion signal intensity as a function of applied collision voltage, were collected for [(NH4BF4)nNH4]+ and compared with those for analogous [(NaBF4)nNa]+ and [(KBF4)nK]+ ions to determine the influence of the cation on the relative stability of cluster ions. In general, the [(NH4BF4)nNH4]+ clusters were found to be easier to dissociate than both the sodium and potassium clusters of comparable size, with [(KBF4)nK]+ ions the most difficult to dissociate.
- Published
- 2008
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36. Influence of a 4-aminomethylbenzoic acid residue on competitive fragmentation pathways during collision-induced dissociation of metal-cationized peptides
- Author
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Erach R. Talaty, Sandra Osburn, Sila O. Ochola, and Michael J. Van Stipdonk
- Subjects
Spectrometry, Mass, Electrospray Ionization ,Collision-induced dissociation ,Stereochemistry ,Molecular Sequence Data ,Substituent ,Protonation ,Conjugated system ,Dissociation (chemistry) ,Analytical Chemistry ,Metal ,chemistry.chemical_compound ,Fragmentation (mass spectrometry) ,Sequence Analysis, Protein ,Cations ,para-Aminobenzoates ,Aromatic amino acids ,Amino Acid Sequence ,Spectroscopy ,Chemistry ,Organic Chemistry ,Silver Compounds ,Sodium Compounds ,Antifibrinolytic Agents ,Metals ,visual_art ,Lithium Compounds ,visual_art.visual_art_medium ,4-Aminobenzoic Acid - Abstract
Formation of [bn+17+cat]+ is a prominent collision-induced dissociation (CID) pathway for Li+- and Na+-cationized peptides. Dissociation of protonated and Ag+-cationized peptides instead favors formation of the rival bn+/[bn-1+cat]+ species. In this study the influence of a 4-aminomethylbenzoic acid (4AMBz) residue on the relative intensities of [b(3)-1+cat]+ and [b(3)+17+cat]+ fragment ions was investigated using several model tetrapeptides including those with the general formula A(4AMBz)AX and A(4AMBz)GX (where X=G, A, V). For Li+- and Na+-cationized versions of the peptides there was a significant increase in the intensity of [b(3)-1+cat]+ for the peptides that contain the 4AMBz residue, and in some cases the complete elimination of the [b(3)+17+cat]+ pathway. The influence of the 4AMBz residue may be attributed to the fact that [b(3)-1+cat]+ would be a highly conjugated species containing an aromatic ring substituent. Comparison of CID profiles generated from Na+-cationized AAGV and A(4AMBz)GV suggests an apparent decrease in the critical energy for generation of [b(3)-1+Na]+ relative to that of [b(3)+17+Na]+ when the aromatic amino acid occupies a position such that it leads to the formation of the highly conjugated oxazolinone, thus leading to an increase in formation rate for the former compared to the latter.
- Published
- 2007
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37. Investigation of the neutral loss of a full amino acid mass during collision-induced dissociation of the b3+ ion derived from a model peptide containing a 4-aminobutyric acid residue
- Author
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Erach R. Talaty, Sandra Osburn, Michael J. Van Stipdonk, and Chawalee Chueachavalit
- Subjects
Alanine ,chemistry.chemical_classification ,Carbon Isotopes ,Spectrometry, Mass, Electrospray Ionization ,Nitrogen Isotopes ,Collision-induced dissociation ,Stereochemistry ,Organic Chemistry ,Imine ,Peptide ,Deuterium ,Peptide Mapping ,Dissociation (chemistry) ,Analytical Chemistry ,Amino acid ,chemistry.chemical_compound ,chemistry ,Fragmentation (mass spectrometry) ,Isotope Labeling ,Peptide bond ,Amino Acids ,gamma-Aminobutyric Acid ,Spectroscopy - Abstract
In a previous study we found that a dominant fragmentation pathway observed for collision-induced dissociation (CID) of b derived from peptides with sequence AXAG, where X is γ-aminobutyric acid (γAbu) or e-aminocaproic acid (Cap), involved the loss of 89 mass units (u). A neutral loss of 89 u corresponded to the free acid mass of an alanine (A) residue. This specific pathway was studied in greater detail here using a series of A(γAbu)AG peptides with strategic positioning of 15N, 13C and 2H isotope labels. Based on the extensive labeling, several possible routes to the net elimination of 89 u are proposed. One is based on initial elimination of either aziridinone or imine and CO, followed by opening of an oxazolinone, tautomerization and elimination of H2O. Another involves formation of an aziridinone by cleavage of the N-terminal amide bond, and transfer of O and H atoms to this fragment via an H-bonded ion-molecule complex to complete the loss of 89 u. Both types of pathway include the transfer/migration of H atoms from the α-carbon position of γAbu or A residues. Copyright © 2007 John Wiley & Sons, Ltd.
- Published
- 2007
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38. Oxidation of 2-propanol ligands during collision-induced dissociation of a gas-phase uranyl complex
- Author
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Michael J. Van Stipdonk, Garold L. Gresham, Victor Anbalagan, Winnie Chien, and Gary S. Groenewold
- Subjects
Collision-induced dissociation ,Chemistry ,Inorganic chemistry ,Condensed Matter Physics ,Tandem mass spectrometry ,Uranyl ,Medicinal chemistry ,Dissociation (chemistry) ,Propanol ,Metal ,chemistry.chemical_compound ,visual_art ,visual_art.visual_art_medium ,Ion trap ,Physical and Theoretical Chemistry ,Instrumentation ,HOMO/LUMO ,Spectroscopy - Abstract
We demonstrate, by way of multi-stage tandem mass spectrometry and extensive deuterium labeling, that 2-propanol is converted to acetone, and 2-propoxide to acetaldehyde, when monopositive 2-propanol-coordinated uranyl-ligand cations are subjected to collision-induced dissociation in the gas-phase environment of an ion trap mass spectrometer. A species with formula [(UO2OCH(CH3)2)(HOCH(CH3)2)]+, derived from dissociation of the gas-phase precursor [(UO2NO3)(HOCH(CH3)2)3]+ eliminates two H atoms and CH3 in consecutive stages to generate a monopositive complex composed of the U(V) species U O 2 + coordinated by acetone and acetaldehyde, i.e. [ U O 2 + (O C(CH3)2)(O C(H)CH3)]. Dissociation of this latter ion resulted in elimination of the two coordinating carbonyl ligands in two consecutive dissociation stages to leave U O 2 + . Analogous reactions were not observed for uranyl complexes containing 1-propanol or 2-methyl-2-propanol, or for cationic complexes with divalent metals such as Ni2+, Co2+, Pb2+ and Ca2+. One explanation for these reactions is bond insertion by the metal center in the bis-ligated uranyl complex, which would be expected to have an LUMO consisting of unoccupied 6d-orbitals that would confer transition metal-like behavior on the complex.
- Published
- 2004
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39. Formation of bare UO2(2+) and NUO(+) by fragmentation of gas-phase uranyl-acetonitrile complexes
- Author
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John K. Gibson, Dean Martin, Maria del Carmen Michelini, Michael J. Van Stipdonk, and Alexandra Plaviak
- Subjects
chemistry.chemical_compound ,Crystallography ,chemistry ,Nitrile ,Fragmentation (mass spectrometry) ,Ligand ,Electrospray ionization ,Inorganic chemistry ,Uranyl hydroxide ,Physical and Theoretical Chemistry ,Uranyl ,Acetonitrile ,Dissociation (chemistry) - Abstract
In a prior study [Van Stipdonk; et al. J. Phys. Chem. A 2006, 110, 959-970], electrospray ionization (ESI) was used to generate doubly charged complex ions composed of the uranyl ion and acetonitrile (acn) ligands. The complexes, general formula [UO2(acn)n](2+), n = 0-5, were isolated in an 3-D quadrupole ion-trap mass spectrometer to probe intrinsic reactions with H2O. Two general reaction pathways were observed: (a) the direct addition of one or more H2O ligands to the doubly charged complexes and (b) charge-exchange reactions. For the former, the intrinsic tendency to add H2O was dependent on the number and type of nitrile ligand. For the latter, charge exchange involved primarily the formation of uranyl hydroxide, [UO2OH](+), presumably via a collision with gas-phase H2O and the elimination of a protonated nitrile ligand. Examination of general ion fragmentation patterns by collision-induced dissociation, however, was hindered by the pronounced tendency to generate hydrated species. In an update to this story, we have revisited the fragmentation of uranyl-acetonitrile complexes in a linear ion-trap (LIT) mass spectrometer. Lower partial pressures of adventitious H2O in the LIT (compared to the 3-D ion trap used in our previous study) minimized adduct formation and allowed access to lower uranyl coordination numbers than previously possible. We have now been able to investigate the fragmentation behavior of these complex ions completely, with a focus on tendency to undergo ligand elimination versus charge reduction reactions. CID can be used to drive ligand elimination to completion to furnish the bare uranyl dication, UO2(2+). In addition, fragmentation of [UO2(acn)](2+) generated [UO2(NC)](+), which subsequently fragmented to furnish NUO(+). Formation of the nitrido by transfer of N from cyanide was confirmed using precursors labeled with (15)N. The observed formation of [UO2(NC)](+) and NUO(+) was modeled by density functional theory.
- Published
- 2014
40. Elucidation of Fragmentation Pathways for the Collision-Induced Dissociation of the Binary Ag(I) Complex with Phenylalanine
- Author
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and Jessica M. Barr, Andrea L. Gallardo, B. Asiri Perera, Erach R. Talaty, and Michael J. Van Stipdonk
- Subjects
chemistry.chemical_classification ,chemistry.chemical_compound ,Phenylacetaldehyde ,chemistry ,Collision-induced dissociation ,Deuterium ,Stereochemistry ,Carboxylic acid ,Phenylalanine ,Physical and Theoretical Chemistry ,Aldehyde ,Carbene ,Dissociation (chemistry) - Abstract
During our ongoing investigation of the formation and reactivity of gas-phase complex ions composed of Ag(I) and various α-amino acids, we discovered that the mass-to-charge ratio for the major collision-induced dissociation (CID) product generated from a binary Ag+ complex with phenylalanine was consistent with the formation of an Ag+ complex with an aldehyde. In this study we investigated and compared the fragmentation pathways for complexes of Ag+ with phenylalanine, phenylalanine with exchangeable protium replaced with deuterium, phenylalanine with the carboxylic acid group labeled with 13C, and phenylalanine with the benzylic group labeled with deuterium. The reaction pathways were determined using multidimensional dissociation steps in an ion-trap mass spectrometer. The dissociation experiments provide clear evidence for the formation of several novel product species, including the Ag+ complex with phenylacetaldehyde, as well as the formation of an Ag+ complex with either a benzyl carbene or styrene...
- Published
- 2001
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41. Infrared Multiple Photon Dissociation Spectroscopy of a Gas-Phase Oxo-Molybdenum Complex with 1,2-Dithiolene Ligands
- Author
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Giel Berden, Michael J. Van Stipdonk, Partha Basu, Sara A. Dille, John K. Gibson, Jos Oomens, and Molecular Spectroscopy (HIMS, FNWI)
- Subjects
Molybdenum ,Photons ,Spectrophotometry, Infrared ,Molecular Structure and Dynamics ,Spin states ,Chemistry ,Ligand ,Ligands ,Article ,Square pyramidal molecular geometry ,Dissociation (chemistry) ,Ion ,Oxygen ,Crystallography ,Computational chemistry ,Organometallic Compounds ,Physics::Atomic and Molecular Clusters ,Quantum Theory ,Density functional theory ,Gases ,Sulfhydryl Compounds ,Singlet state ,Infrared multiphoton dissociation ,Physical and Theoretical Chemistry - Abstract
Electrospray ionization (ESI) in the negative ion mode was used to create anionic, gas-phase oxo-molybdenum complexes with dithiolene ligands. By varying ESI and ion transfer conditions, both doubly and singly charged forms of the complex, with identical formulas, could be observed. Collision-induced dissociation (CID) of the dianion generated exclusively the monoanion, while fragmentation of the monoanion involved decomposition of the dithiolene ligands. The intrinsic structure of the monoanion and the dianion were determined by using wavelength-selective infrared multiple-photon dissociation (IRMPD) spectroscopy and density functional theory calculations. The IRMPD spectrum for the dianion exhibits absorptions that can be assigned to (ligand) C=C, C-S, C-C N, and Mo=O stretches. Comparison of the IRMPD spectrum to spectra predicted for various possible conformations allows assignment of a pseudo square pyramidal structure with C-2 nu, symmetry, equatorial coordination of MoO2+ by the S atoms of the dithiolene ligands, and a singlet spin state. A single absorption was observed for the oxidized complex. When the same scaling factor employed for the dianion is used oxidized version, theoretical spectra suggest that the absorption is the Mo=O stretch for a distorted square pyramidal structure and doublet spin state. A predicted change in conformation upon oxidation of the dianion is consistent with a proposed bonding scheme for the bent-metallocene dithiolene compounds [Lauher, J. W.; Hoffmann, R. J. Am. Chem. Soc. 1976, 98, 1729-1742], where a large folding of the dithiolene moiety along the S center dot center dot center dot S vector is dependent on the occupancy of the in-plane metal d-orbital.
- Published
- 2014
42. IRMPD and DFT study of the loss of water from protonated 2-hydroxynicotinic acid
- Author
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Michael J. Van Stipdonk, Giel Berden, Jos Oomens, Michael J. Kullman, and Molecular Spectroscopy (HIMS, FNWI)
- Subjects
Addition reaction ,Chemistry ,Protonation ,Condensed Matter Physics ,Dissociation (chemistry) ,Ion ,Reaction dynamics ,Computational chemistry ,Density functional theory ,Infrared multiphoton dissociation ,Ion trap ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy - Abstract
Collision-induced dissociation (CID) of protonated 2-hydroxynicotinic acid (2-OHNic) generates a dominant product ion through loss of 18 mass units, presumably the elimination of water. Subsequent isolation and storage of this product ion in the gas-phase environment of an ion trap mass spectrometer, without imposed collisional activation, shows that the species undergoes addition reactions to furnish new products that are higher in mass by 18 and 32 units. Density functional theory (DFT) calculations suggest that an acylium ion (i.e., loss of H2O from the acid group) is energetically more favored than is a species generated by elimination of H2O from the hydroxypyridine ring. Formation of the acylium product is confirmed by comparing the infrared multiple photon dissociation (IRMPD) spectrum to theoretical spectra from (DFT) harmonic calculations for several possible isomers. A thorough DFT study of the reaction dynamics suggests that the acylium ion is generated from the global minimum for the protonated precursor along a pathway that involves proton transfer from the hydroxypyridine ring and elimination of OH from the acid group.
- Published
- 2012
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43. Gas-Phase Coordination Complexes of UVIO22+, NpVIO22+, and PuVIO22+ with Dimethylformamide
- Author
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Daniel Rios, John K. Gibson, Michael J. Van Stipdonk, and Philip X. Rutkowski
- Subjects
Collision-induced dissociation ,Electrospray ionization ,Inorganic chemistry ,Plutonyl ,Uranyl ,Medicinal chemistry ,Dissociation (chemistry) ,Perchlorate ,chemistry.chemical_compound ,chemistry ,Fragmentation (mass spectrometry) ,Structural Biology ,Dimethylformamide ,Spectroscopy - Abstract
Electrospray ionization of actinyl perchlorate solutions in H(2)O with 5% by volume of dimethylformamide (DMF) produced the isolatable gas-phase complexes, [An(VI)O(2)(DMF)(3)(H(2)O)](2+) and [An(VI)O(2)(DMF)(4)](2+), where An = U, Np, and Pu. Collision-induced dissociation confirmed the composition of the dipositive coordination complexes, and produced doubly- and singly-charged fragment ions. The fragmentation products reveal differences in underlying chemistries of uranyl, neptunyl, and plutonyl, including the lower stability of Np(VI) and Pu(VI) compared with U(VI).
- Published
- 2011
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44. Apparent inhibition by arginine of macrocyclic b ion formation from singly charged protonated peptides
- Author
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Samuel P. Molesworth and Michael J. Van Stipdonk
- Subjects
chemistry.chemical_classification ,Models, Molecular ,Macrocyclic Compounds ,Arginine ,Stereochemistry ,010401 analytical chemistry ,Peptide ,Protonation ,010402 general chemistry ,Mass spectrometry ,Tandem mass spectrometry ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,chemistry ,Fragmentation (mass spectrometry) ,Structural Biology ,Tandem Mass Spectrometry ,Protons ,Peptides ,Peptide sequence ,Spectroscopy - Abstract
There is now strong evidence for the existence of macrocyclic isomers of b(n)(+) ions, the formation and subsequent opening of which can lead to loss of sequence information from protonated peptides in multiple-stage tandem mass spectrometry experiments. In this study, the fragmentation patterns of protonated YARFLG and permuted isomers of the model peptide were investigated by collision-induced dissociation. Of interest was the potential influence of the arginine residue, and its position in the peptide sequence, on formation of the presumed macrocyclic b(5) ion isomer and potential loss of sequence information. We find that regardless of the sequence position (either internal or at the N- or C-terminus), only direct sequence ions or ions directly related to fragmentation of the arginine side chain are observed.
- Published
- 2009
45. Influence of size on apparent scrambling of sequence during CID of b-type ions
- Author
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Sandra Osburn, Michael J. Van Stipdonk, and Samuel P. Molesworth
- Subjects
chemistry.chemical_classification ,Ions ,Electrospray ,Oligopeptide ,Spectrometry, Mass, Electrospray Ionization ,Base Sequence ,Molecular Structure ,Chemistry ,Stereochemistry ,Molecular Sequence Data ,Analytical chemistry ,Peptide ,Mass spectrometry ,Tandem mass spectrometry ,Dissociation (chemistry) ,Ion ,Scrambling ,Isomerism ,Structural Biology ,Amino Acid Sequence ,Oligopeptides ,Spectroscopy - Abstract
We investigated the influence of peptide size on the apparent loss of sequence during collision-induced dissociation (CID) of b ions using a group of peptides containing from between 4 and 10 residues. Although scrambling of sequence for b3+ generated from tetrapeptides is minimal, significant formation of nondirect sequence ions (i.e., ions for which scrambling has apparently occurred) was observed for all larger b ions included in the study.
- Published
- 2009
46. Spectroscopic evidence for an oxazolone structure of the b(2) fragment ion from protonated tri-alanine
- Author
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Sarah M. Young, Michael J. Van Stipdonk, Samuel P. Molesworth, and Jos Oomens
- Subjects
Collision-induced dissociation ,Spectrophotometry, Infrared ,Stereochemistry ,010401 analytical chemistry ,Oxazolone ,Protonation ,Photoionization ,010402 general chemistry ,Photochemistry ,Mass spectrometry ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Structural Biology ,Physics::Atomic and Molecular Clusters ,Quantum Theory ,Infrared multiphoton dissociation ,Protons ,Spectroscopy ,Nuclear Experiment ,Oligopeptides - Abstract
Infrared multiple photon dissociation (IRMPD) spectroscopy is used to identify the structure of the b(2)(+) ion generated from protonated tri-alanine by collision induced dissociation (CID). The IRMPD spectrum of b(2)(+) differs markedly from that of protonated cyclo-alanine-alanine, demonstrating that the product is not a diketopiperazine. Instead, comparison of the IRMPD spectrum of b(2)(+) to spectra predicted by density functional theory provides compelling evidence for an oxazolone structure protonated at the oxazolone N-atom. (J Am Soc Mass Spectrom 2009, 20, 334-339) (C) 2009 Published by Elsevier Inc. on behalf of American Society for Mass Spectrometry
- Published
- 2008
47. IRMPD spectroscopy of anionic group II metal nitrate cluster ions
- Author
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Jos Oomens, Christopher M. Leavitt, Michael J. Van Stipdonk, Jeffrey D. Steill, Ryan P. Dain, and Gary S. Groenewold
- Subjects
inorganic chemicals ,Chemistry ,Infrared ,Stereochemistry ,Photodissociation ,Infrared spectroscopy ,Dissociation (chemistry) ,chemistry.chemical_compound ,Crystallography ,Nitrate ,Structural Biology ,Density functional theory ,Infrared multiphoton dissociation ,Spectroscopy - Abstract
Anionic group II metal nitrate clusters of the formula [M(2)(NO(3))(5)](-), where M(2) = Mg(2), MgCa, Ca(2), and Sr(2), are investigated by infrared multiple photon dissociation (IRMPD) spectroscopy to obtain vibrational spectra in the mid-IR region. The IR spectra are dominated by the symmetric and the antisymmetric nitrate stretches, with the latter split into high and low-frequency components due to the distortion of nitrate anion symmetry by interactions with the cation. Density functional theory (DFT) is used to predict geometries and vibrational spectra for comparison to the experimental spectra. Calculations yield two stable isomers: the first one contains two terminal nitrate anions on each cation and a single bridging nitrate ("mono-bridging"), while the second structure features a single terminal nitrate on each cation with three bridging nitrate ligands ("tri-bridging"). The tri-bridging isomer is calculated to be lower in energy than the mono-bridging one for all species. Theoretical spectra of the tri-bridging structure provide a better qualitative match to the experimental infrared spectra of [Mg(2)(NO(3))(5)](-) and [MgCa(NO(3))(5)](-). However, the profile of the low-frequency nu(3) band for the Mg(2) complex suggests a third possible isomer not predicted by theory. The IRMPD spectra of the Ca(2) and Sr(2) complexes are better reconciled by a weighted summation of the spectra of both isomers suggesting that a mixture of structures is present.
- Published
- 2008
48. Investigations of acidity and nucleophilicity of diphenyldithiophosphinate ligands using theory and gas-phase dissociation reactions
- Author
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Megan L. Moser, Michael J. Van Stipdonk, Garold L. Gresham, Michael T. Benson, Dean R. Peterman, Gary S. Groenewold, John R. Klaehn, Frédéric Aubriet, Christopher M. Leavitt, and Jean-Jacques Gaumet
- Subjects
Trifluoromethyl ,Electrospray ionization ,Radical ,Inorganic chemistry ,chemistry.chemical_element ,Medicinal chemistry ,Dissociation (chemistry) ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Nucleophile ,Fluorine ,Density functional theory ,Physical and Theoretical Chemistry ,Selectivity - Abstract
Diphenyldithiophosphinate (DTP) ligands modified with electron-withdrawing trifluoromethyl (TFM) substitutents are of high interest because they have demonstrated potential for exceptional separation of Am (3+) from lanthanide (3+) cations. Specifically, the bis( ortho-TFM) (L 1 (-)) and ( ortho-TFM)( meta-TFM) (L 2 (-)) derivatives have shown excellent separation selectivity, while the bis( meta-TFM) (L 3 (-)) and unmodified DTP (L u (-)) did not. Factors responsible for selective coordination have been investigated using density functional theory (DFT) calculations in concert with competitive dissociation reactions in the gas phase. To evaluate the role of (DTP + H) acidity, density functional calculations were used to predict p K a values of the free acids (HL n ), which followed the trend of HL 3HL 2HL 1HL u. The order of p K a for the TFM-modified (DTP+H) acids was opposite of what would be expected based on the e (-)-withdrawing effects of the TFM group, suggesting that secondary factors influence the p K a and nucleophilicity. The relative nucleophilicities of the DTP anions were evaluated by forming metal-mixed ligand complexes in a trapped ion mass spectrometer and then fragmenting them using competitive collision induced dissociation. On the basis of these experiments, the unmodified L u (-) anion was the strongest nucleophile. Comparing the TFM derivatives, the bis( ortho-TFM) derivative L 1 (-) was found to be the strongest nucleophile, while the bis( meta-TFM) L 3 (-) was the weakest, a trend consistent with the p K a calculations. DFT modeling of the Na (+) complexes suggested that the elevated cation affinity of the L 1 (-) and L 2 (-) anions was due to donation of electron density from fluorine atoms to the metal center, which was occurring in rotational conformers where the TFM moiety was proximate to the Na (+)-dithiophosphinate group. Competitive dissociation experiments were performed with the dithiophosphinate anions complexed with europium nitrate species; ionic dissociation of these complexes always generated the TFM-modified dithiophosphinate anions as the product ion, showing again that the unmodified L u (-) was the strongest nucleophile. The Eu(III) nitrate complexes also underwent redox elimination of radical ligands; the tendency of the ligands to undergo oxidation and be eliminated as neutral radicals followed the same trend as the nucleophilicities for Na (+), viz. L 3 (-)L 2 (-)L 1 (-)L u (-).
- Published
- 2008
49. Infrared multiple-photon photodissociation of gas-phase group II metal-nitrate anions
- Author
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Chris Leavitt, Garold L. Gresham, Jos Oomens, Ryan P. Dain, Michael J. Van Stipdonk, Gary S. Groenewold, Linda Myers, and Vy Pham
- Subjects
Chemistry ,Infrared ,Photodissociation ,Analytical chemistry ,Infrared spectroscopy ,Condensed Matter Physics ,Dissociation (chemistry) ,Spectral line ,Density functional theory ,Infrared multiphoton dissociation ,Physical and Theoretical Chemistry ,Spectroscopy ,Instrumentation - Abstract
Infrared spectra of gas-phase metal-nitrate anions M(NO3)(3)(-), where M = Mg2+, Ca2+, Sr2+ and Ba2+, were recorded by infrared multiple-photon dissociation (IRMPD) spectroscopy. Photodissociation of each of the precursors produces NO3- through the elimination of a neutral M(NO3)(2) unit. An absorption pattern characteristic of metal nitrates is observed in the IRMPD spectra, including the symmetric and antisymmetric NO3 stretches. The latter is split into high-and low-frequency components as a result of perturbation of the nitrate symmetry by complexation to the metal ion, and the magnitude of the splitting decreases following the trend Mg2+ > Ca2+ >Sr2+ congruent to Ba2+. The experimental spectra are in good general agreement with those obtained from density functional theory (DFT) calculations. (C) 2008 Elsevier B.V. All rights reserved.
- Published
- 2008
50. Collision-induced dissociation of protonated tetrapeptides containing beta-alanine, gamma-aminobutyric acid, epsilon-aminocaproic acid or 4-aminomethylbenzoic acid residues
- Author
-
Erach R. Talaty, Travis J. Cooper, Sandra Osburn, and Michael J. Van Stipdonk
- Subjects
chemistry.chemical_classification ,education.field_of_study ,Spectrometry, Mass, Electrospray Ionization ,Collision-induced dissociation ,Stereochemistry ,Organic Chemistry ,Population ,Protonation ,Peptide ,Dissociation (chemistry) ,Analytical Chemistry ,Amino acid ,chemistry.chemical_compound ,chemistry ,Amide ,Intramolecular force ,Aminocaproic Acid ,beta-Alanine ,para-Aminobenzoates ,Protons ,education ,4-Aminobenzoic Acid ,Oligopeptides ,Spectroscopy ,gamma-Aminobutyric Acid - Abstract
The influence of the presence and position of a single beta-alanine, gamma-aminobutyric acid, epsilon-aminocaproic acid or 4-aminomethylbenzoic acid residue on the tendency to form b(n)+ -and y(n)+ -type product ions was determined using a group of protonated tetrapeptides with general sequence XAAG, AXAG and AAXG (where X refers to the position of amino acid substitution). The hypothesis tested was that the 'alternative' amino acids would influence product ion signal intensities by inhibiting or suppressing either the nucleophilic attack or key proton transfer steps by forcing the adoption of large cyclic intermediates or blocking cyclization altogether. We found that specific b ions are diminished or eliminated completely when betaA, gammaAbu, Cap or 4AMBz residues are positioned such that they should interfere with the intramolecular nucleophilic attack step. In addition, differences in the relative proton affinities of the alternative amino acids influence the competition between complementary b(n) and y(n) ions. For both the AXAG and the XAAG series of peptides, collision-induced dissociation (CID) generated prominent b ions despite potential inhibition or suppression of intramolecular proton migration by the betaA, gammaAbu, Cap or 4AMBz residues. The prominent appearance of b ions from the AXAG and XAAG peptide is noteworthy, and suggests either that proton migration occurs through larger, 'whole' peptide cyclic intermediates or that fragmentation proceeds through a population of [M+H]+ isomers that are initially protonated at amide O atoms.
- Published
- 2006
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