1. Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.
- Author
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Qin Y, Havulinna AS, Liu Y, Jousilahti P, Ritchie SC, Tokolyi A, Sanders JG, Valsta L, Brożyńska M, Zhu Q, Tripathi A, Vázquez-Baeza Y, Loomba R, Cheng S, Jain M, Niiranen T, Lahti L, Knight R, Salomaa V, Inouye M, and Méric G
- Subjects
- ABO Blood-Group System genetics, Bifidobacterium physiology, Clostridiales physiology, Cohort Studies, Colorectal Neoplasms genetics, Colorectal Neoplasms microbiology, Depressive Disorder, Major genetics, Depressive Disorder, Major microbiology, Dietary Fiber, Enterococcus faecalis physiology, Genome-Wide Association Study, Humans, Lactase genetics, Mediator Complex genetics, Mendelian Randomization Analysis, Metagenome, Morganella physiology, Diet, Gastrointestinal Microbiome genetics, Gastrointestinal Tract microbiology, Genetic Variation, Host Microbial Interactions, Polymorphism, Single Nucleotide
- Abstract
Human genetic variation affects the gut microbiota through a complex combination of environmental and host factors. Here we characterize genetic variations associated with microbial abundances in a single large-scale population-based cohort of 5,959 genotyped individuals with matched gut microbial metagenomes, and dietary and health records (prevalent and follow-up). We identified 567 independent SNP-taxon associations. Variants at the LCT locus associated with Bifidobacterium and other taxa, but they differed according to dairy intake. Furthermore, levels of Faecalicatena lactaris associated with ABO, and suggested preferential utilization of secreted blood antigens as energy source in the gut. Enterococcus faecalis levels associated with variants in the MED13L locus, which has been linked to colorectal cancer. Mendelian randomization analysis indicated a potential causal effect of Morganella on major depressive disorder, consistent with observational incident disease analysis. Overall, we identify and characterize the intricate nature of host-microbiota interactions and their association with disease., (© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.)
- Published
- 2022
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