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For ages, specialists from varying fields have studied the diets of the primeval inhabitants of our planet, detecting diet remains in archaeological specimens using a range of morphological and biochemical methods. As of recent, metagenomic ancient DNA studies have allowed for the comparison of the fecal and gut microbiomes associated to archaeological specimens from various regions of the world; however the complex dynamics represented in those microbial communities still remain unclear. Theoretically, similar to eukaryote DNA the presence of genes from key microbes or enzymes, as well as the presence of DNA from viruses specific to key organisms, may suggest the ingestion of specific diet components. In this study we demonstrate that ancient virus DNA obtained from coprolites also provides information reconstructing the host's diet, as inferred from sequences obtained from pre-Columbian coprolites. This depicts a novel and reliable approach to determine new components as well as validate the previously suggested diets of extinct cultures and animals. Furthermore, to our knowledge this represents the first description of the eukaryotic viral diversity found in paleofaeces belonging to pre-Columbian cultures.

Knowledge about the diets of New Zealand's extinct moa (Aves: Dinornithiformes) is heavily biased towards just three species (Dinornis robustus , Megalapteryx didinus and Pachyornis elephantopus), which represent about 90% of all identified coprolites and gizzard content samples. By comparison, the diets of the other six moa species are poorly known. Here, we report the discovery of a new coprolite deposit attributed to little bush moa (Anomalopteryx didiformis) based on DNA barcoding and former moa species distributions. The deposit is the southernmost site from which moa coprolites have been recovered and just the second to contain mid-Holocene specimens. Moreover, the deposit provides the longest known temporal span (∼2200 years) of moa coprolites within a stratigraphic context. Pollen and plant DNA from the coprolites, as well as associated plant macrofossils, indicate that the deposit spans a period when the forest canopy was transitioning from Podocarpaceae to silver beech (Lophozonia menziesii) dominance about 6800–4600 years ago. Our analysis of coprolite content supports the current hypothesis that little bush moa browsed trees and shrubs within the forest understorey, but provides new evidence that ferns were also an important part of their diet. Based on this finding, we suggest that moa might once have played a previously unrecognised role in the dispersal of ground fern spores throughout New Zealand forests. • We report the discovery of a mid-Holocene deposit of little bush moa coprolites. • The deposit contains ∼2200 years of moa coprolites within a stratigraphic context. • Little bush moa browsed trees and shrubs within the forest understorey. • We present new evidence that ferns were also an important part of their diet. [ABSTRACT FROM AUTHOR]