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The 1:2 complex of 1,4-dimethylpiperazine mono-betaine (MBPZ) with squaric acid (H2SQ) has been characterised by single-crystal X-ray analysis, FTIR and NMR spectroscopies, and by DFT calculations. The crystals are monoclinic, space groupP21/c. Two MBPZ cations and four hydrogen squarate anions (HSQ− ) are linked by strong O(1)–H…O(13) (2.525(4) Å), O(14)–H…O(21) (2.511(4) Å) and N(4)–H…O(23) (2.607(3) Å) hydrogen bonds into a cyclamer. In turn, the cyclamers are linked into a helixthrough two O(24)–H…O(11) hydrogen bonds of 2.516(4) Å. The piperazinium ring has a chair conformation with N(4)–CH3and N(1)–CH2COOH substituents in the equatorial positions, and N(1)–CH3in the axial position. The FTIR spectrum is consistent with the crystal data. Two models of the 1:2 complex of MBPZ with H2SQ have been optimised at the B3LYP/6-311++G(d,p) level of theory and have been used to calculate harmonic IR frequencies. One of the models (2) is dominated by electrostatic attraction between NH(4)+and HSQ− , whereas in the other (3) squaric acid interacts with a zwitterionic MBPZ through the O–H…O and O–H…N hydrogen bonds. [ABSTRACT FROM PUBLISHER]

Abstract: The structure of 4-hydroxy-1-methylpiperidinium perchlorate has been characterized by X-ray diffraction, FTIR, Raman and NMR spectroscopies, and by DFT calculations. The crystals belong to orthorhombic Pbca group. The piperidine ring has a chair conformation with the hydroxyl and methyl groups in the equatorial positions. The hydroxyl group interacts by bifurcated O–H···O hydrogen bonds with the ClO4 − anion of 2.905(5) and 3.045(5)Å. Two optimized structures of the title compound have been calculated by the B3LYP/6–31G(d,p) approach. In one of them the anion is involved in the N+–H···O hydrogen bonds of 2.629Å, while in the other the anion interacts electrostatically with the N+ atom of the 4-hydroxy-1-methylpiperidinium cation. In aqueous solution two 4-hydroxy-1-methylpiperidinium perchlorates are in the conformational equilibrium. Their conformations are discussed on the basis of the NMR spectra. The solid state FTIR spectrum is consistent with the X-ray data. [Copyright &y& Elsevier]

A novel and unique crystalline three-component complex was formed of 2-(1-piperidine)ethanol, p -hydroxybenzoic acid and water at the ratio 1:1:1. Its structure has been determined by single-crystal X-ray diffraction. This is an example of a hydrogen-bonded interaction between amino alcohol and benzoic acid molecules. Water acts as a bridge between molecules. The molecules are linked through medium-strong OH⋯O hydrogen bonds from 2.665(6) to 2.813(6) Å and NH⋯O one 2.744(5) Å in length. The molecular structure of 2-(1-piperidinium)ethanol p -hydroxybenzoate hydrate has been characterized by FTIR and Raman spectra and optimized at the B3LYP/6−311++G(d,p) level of theory. The potential energy distributions (PED) have been used to assign the vibrational spectra. Charge delocalization was analyzed using the natural bond orbital (NBO) methods. [ABSTRACT FROM AUTHOR]

A racemic mixture of ( R/S )-pipecolic acid (piperidine-2-carboxylic acid, P2C) forms a stable crystalline aggregate with 2,6-dichloro-4-nitrophenol (DCNP) at the unusual 2:3 ratio ( 1 ). Complex 1 has been characterized by X-ray analysis, Raman, FTIR and NMR spectra, and its structure ( 2 ) has been optimized by the B3LYP/6-31G(d,p) approach. The crystals are monoclinic, P 2 1 / n space group. The piperidine rings adopt chair conformations with the equatorial positions of the carboxylic groups. A P2C zwitterion is linked to two 2,6-dichloro-4-nitrophenol molecules through two non-equivalent short COO⋯HO–C hydrogen bonds and a cation (P2C + H) is hydrogen bonded with the DCNP − anion. These P2C molecules are NH⋯O hydrogen bonded. The FTIR spectrum is in agreement with the X-ray studies. The 13 C CP MAS spectrum confirms the presence of two different P2C and DCNP units in the complex. In the optimized structure of the isolate aggregate, three DCNP molecules are bonded to two pipecolic acid zwitterions. Charge delocalization has been analyzed using the Natural Bond Orbital (NBO) method. [ABSTRACT FROM AUTHOR]

The 1:1 complex of piperidine-4-carboxylic acid (isonipecotic acid, P4C) with 2,6-dichloro-4-nitrophenol (DCNP), has been investigated by single-crystal X-ray analysis, Raman and FTIR spectroscopy and theoretical calculations. The hydrogen-bonded-ion-pair complex is observed in the crystalline state with the O⋯H⋯OOC hydrogen bond of 2.453(16) Å. FTIR spectrum shows a broad absorption in the 1600–400 cm −1 region characteristic of very short OHO hydrogen bond, broken by the Evans holes. The complexes are joined through N H⋯O into a H-bonding network. The N H⋯O mode appears as a broad band in the range of 3100–2000 cm −1 . In the structure optimized at the B3LYP/6–311 + +G(d,p) level of theory the proton is transferred from DCNP to P4C, and molecules are joined through the O⋯HOOC hydrogen bond of 2.640 Å. The experimental and theoretical infrared spectra are discussed. Detail interpretation of the vibrational spectra has been carried out with the use of computed Potential Energy Distribution (PED). [ABSTRACT FROM AUTHOR]

( R / S )-Piperidine-3-carboxylic acid (P3C, nipecotic acid) forms a stable 1:1 hydrogen-bonded complex with 2,6-dichloro-4-nitrophenol (DCNP). Both, in crystal and in the optimized theoretically structure by the B3LYP/6-311 + +G(d,p) approach the proton is transferred from DCNP to P3C. The ( R ) and ( S )-stereoisomersic complexes of piperidinium-3-carboxylic acid 2,6-dichloro-4-nitrophenolate, P3C + H·DCNP − , aggregate into centrosymmetric cyclic dimers through the COOH⋯O − and N + H⋯ONO hydrogen bonds of 2.57(1) and 3.06(1) Å, respectively, which in turn are linked into a ladder-type cyclamer through the C H⋯Cl hydrogen bonds of 3.71(1) Å. The title compound is characterized by single-crystal X-ray analysis, Raman and FTIR spectroscopies. The structures of the complexes of the ratio 1:1 (monomer), 2:2 (dimer) and 4:4 (cyclamer) of P3C + H·DCNP − units are optimized by the B3LYP/6-311 + + G(d,p) approach and compared with the solid-state experimental structure. Detail interpretation of the vibrational spectra has been carried out by computing Potential Energy Distribution (PED). Charge delocalization has been analyzed using the Natural Bond Orbital (NBO) method. [ABSTRACT FROM AUTHOR]

• Structure of 8 - hydroxyquinoline betaine monohydrate was solved by X-ray. • The one proton of disordered water molecules is shared between two half-occupied sides. • Three broad bands classify the FTIR spectrum as the ABC type. • PED are used to assign the bands in the vibrational spectrum. • Hirshfeld surface, Mulliken atomic charges, MEP, HOMO-LUMO were computed. • The assignment of 1H and 13C resonance signals are based on the 2D measurements. Molecular structure and properties of 8-hydroxyquinoline betaine monohydrate (1-carboxymethyl-8-hydroxyquinolinium inert salt monohydrate) were studied by X-ray diffraction, DFT calculations, FTIR and NMR spectra. In the crystals, 8-hydroxyquinoline betaine and water are bonded by an intermolecular and asymmetric COO···H 2 O hydrogen bond of 2.782(3) Å. The water molecules are disordered so that one of the proton is shared between two half occupied sites. The hydroxyl group of quinoline is bonded to the neighboring molecule by the O−H···OOC hydrogen bond of 2.571(3) Å. The molecular geometry, Hirshfeld surface, Mulliken atomic charge distribution, molecular electrostatic potential, frontier molecular orbitals, vibrational wavenumbers, magnetic isotropic shielding constants were determined using the density functional theory (DFT/B3LYP) with 6–311++G(d,p) basis set. The FTIR spectrum shows a characteristic ABC structure, typical of medium-short hydrogen bonds. The potential energy distribution (PED) was used to assign the bands in the vibrational spectrum. 1H and 13C NMR spectra were analyzed. [Display omitted] [ABSTRACT FROM AUTHOR]

Abstract: 2-Hydroxymethyl-pyridine with phenacyl bromide gives 3-hydroxy-3-phenyl-pyrido[2,1-c][1,4]dihydrooxazinium bromide (1). Its structure in crystal was determined by X-ray diffraction and confirmed by FTIR spectra and B3LYP calculations. In DMSO and D2O solutions, this compound exists in equilibrium mixtures with N-phenacyl-2-hydroxymethyl-pyridinium bromide (2). The equilibrium mixture was proved by FTIR, 1H, 13C and 15N NMR spectra. Correlations between the experimental 1H and 13C NMR chemical shifts for 1 and 2 and GIAO/B3LYP/6-31G(d,p) calculated magnetic isotropic shielding tensors (σ), δ exp=a+bσ cal, are reported. A good linear relationship between the experimental and calculated data was obtained only for carbons. [Copyright &y& Elsevier]

Abstract 2-(Quinuclidinium)-alkanocarboxylates co-crystallize with 2,6-dichloro-4-nitrophenol at the ratios 1:1 and 1:2 depending on the alkyl-chain lengths. The obtained complexes have been characterized by single-crystal X-ray diffraction, UV–vis, FTIR and NMR spectroscopy. The compounds 2-(quinuclidinium)-acetate and 2-(quinuclidinium)-propionate form complexes with 2,6-dichloro-4-nitrophenol at the stoichiometric ratio 1:2, while 2-(quinuclidinium)-butyrate and 2-(quinuclidinium)-valerate at ratio 1:1. Three crystal structures of compounds of these series were determined, but no single crystals of sufficient quality could be obtained of the 2-(quinuclidinium)-butyrate complex. The B3LYP/6-311++G(d,p) approach has been used to determine structures of their isolated molecules and to interpret the IR and UV–vis spectra. Diagrams of the HOMO and LUMO of molecules have been obtained. Graphical abstract Image 1 Highlights • Quiniclidinium-alkanocarboxylates form H B complexes with 2,6-dichloro-4-nitrophenol. • Lower homologues form molecular complexes at the 1:2 ratio. • Longer homologues form proton transfer 1:1 complexes. • Molecular structures were solved by X-ray diffraction and optimized by DFT methods. • UV–vis, FTIR and NMR spectra were measured. [ABSTRACT FROM AUTHOR]

The structures of 1,3-bis(3-hydroxymethylpyridinium)propane dibromide ( 1 ), 1,3-bis(3-hydroxymethylpyridinium)propane tetrabromozincate ( 2 ) and 1,3-bis(3-hydroxymethylpyridinium)propane tetrabromocuprate ( 3 ) have been studied by X-ray diffraction, DFT, FTIR, NMR and UV–vis methods. The crystal structures of three analogous compounds are significantly different: 1 is orthorhombic, space group Fdd 2, Z = 8, 2 is triclinic, space group P 1 ¯ , Z = 2 and 3 is monoclinic, space group C 2 /c , Z = 8. The bispyridinium dication in 1 lies on the special position on the 2-fold axis. Each 3-hydroxymethyl group forms an OH⋯Br hydrogen bond, and the dications combine into three-dimensional networks through numerous CH⋯Br bonds. The IR spectra of the dibromide of 1,3-bis(3-hydroxymethylpyridinium)propane ( 1 ) and its tetrabromometallates ( 2 and 3 ) were compared and their interpretation was confirmed by calculated spectra. UV–vis spectra for tetrabromocuprate salt ( 3 ) showed significant differences between solid-phase and water solution. [ABSTRACT FROM AUTHOR]

The complex of 2-(hydroxymethyl)-1-methyl-piperidine [2-(1-methyl-piperidine)-methanol] (MPMe) and p -hydroxybenzoic acid (HBA) crystallizes as a hydrate. HBA interacts through the OH···O and NH···O hydrogen bonds with MPMe. The water mediated hydrogen-bonded bridge molecules MPMe and HBA. The structure of 2-(hydroxymethyl)-1-methyl-piperidinium p -hydroxybenzoate hydrate has been characterized by X-ray diffraction, FTIR and NMR spectroscopy and optimized at the B3LYP/6-311++G(d,p) level of theory. The potential energy distributions, PED, have been used to assign the vibrational spectra. The GIAO/B3LYP/6-311++G(d,p) calculated magnetic isotropic shielding constants have been used to interpret the chemical shifts in the 1 H and 13 C NMR spectra. [ABSTRACT FROM AUTHOR]

The molecular structure and spectroscopic properties of the 1:1 complex of quinuclidine (Q) with 2,6-dichloro-4-nitrophenol (DCNP) have been characterized by X-ray diffraction, B3LYP/6–311++G(d,p) calculations, UV–vis, FTIR and NMR spectroscopies. In the crystals the proton from DCNP is transferred to Q, and the ionic pair is linked by the N + H⋯O − hydrogen bond of 2.620(2) Å, while in the theoretically optimized structure a molecular complex is present. The band at 405 nm in the UV–vis spectra in ethanol provides the evidence of proton transfer. The calculated natural atomic charges (NBO) show the differences between neutral components Q and DCNP, and the corresponding cation Q + H or anion DCNP − . The potential energy distribution (PED) has been used to assign the vibrational spectra. [ABSTRACT FROM AUTHOR]

The molecular complex of N -ethyl-3-hydroxypyridinium hydrogen squarate has been obtained and characterized by single-crystal X-ray diffraction, B3LYP/6-311++G(d,p) calculations, Raman, FTIR and NMR spectra. The complex is built of OH⋯O hydrogen-bonded dimer involving two anions and two cations. In order to establish a tautomeric equilibrium between 3-phenolic and 3-pyridone forms in N -ethyl-3-oxopyridinium unit in the complex, additionally N -ethyl-3-oxopyridinium has been studied by the same experimental and theoretical methods. The potential energy distributions (PED) have been used to assign the vibrational spectra. Charge delocalization has been analyzed using the Natural Bond Orbital (NBO) method. [ABSTRACT FROM AUTHOR]

The structure of the complex of dimethylphenyl betaine (DMPB) with dichloroacetic acid (DCA) ( 1 ) has been investigated by X-ray diffraction, FTIR and Raman spectroscopy, and B3LYP/6-311 + + G(d,p) calculations. The crystal is monoclinic, space group P 2 1 . The acid is connected with betaine through the O H⋯O hydrogen bond of 2.480(2) Å. In the optimized structure the short, asymmetric O⋯O distance is 2.491 Å. FTIR spectrum shows a broad absorption in the 1500–400 cm −1 region characteristic of very short O H⋯O hydrogen bond caused by Fermi resonance between νOH and overtones of δOH and γOH. In the Raman spectrum this broad absorption is not observed. The potential energy distributions (PED) were used for the assignments of IR and Raman frequencies in the experimental and calculated spectra. The FTIR and Raman spectra of the crystal complex are consistent with the X-ray results. [ABSTRACT FROM AUTHOR]

• 5-(Quinolinium)-valeric acid bromide hydrates form centrosymmetric and asymmetric dimers. • Water is a bridge between 5-(quinolinium)-valeric acid cations and bromide anions. • The DFT calculations were used to optimize isolated structures of monomer and dimer. • PED are used to assign the bands in the vibrational spectrum. • The NBO, MEP and QTAIM methods were used to characterize the optimized structures. The molecular structure and properties of 5-(quinolinium)-valeric acid bromide monohydrate are characterized by X-ray diffraction, B3LYP/6–311++G(d,p) calculations, FTIR and NMR spectra. Two molecules of this compound are hydrogen bonded through two water molecules and two bromide anions into centrosymmetric dimers, which are arranged in a strongly anisotropic layered structure. The structures of monomer and dimer of the title complex are optimized at the B3LYP/6–311++G(d,p) level of theory. The conformations of the valeric acid unit in the crystalline monohydrate and in isolated molecules (monohydrates and anhydrous forms) are compared. The experimental and theoretical infrared spectra are discussed. The FTIR spectrum shows an absorption in the 3500–2700 cm−1 region attributed to the νCOOH···OH 2 and νBr−···H 2 O. The potential energy distributions (PED) are used to assign bands in the IR spectrum of the monomer. The 1H and 13C NMR chemical shifts are assigned by two-dimensional techniques, COSY, HSQC and HMBC. Charge delocalization is analyzed using the natural bond orbital (NBO) method and it is shown in molecular electrostatic potential (MEP) maps. The bent conformations of the computed structures are characterized by the QTAIM method. Image, graphical abstract [ABSTRACT FROM AUTHOR]

N- Methylpyrrolidine betaine (N- carboxymethyl- N- methyl-pyrrolidinium, inner salt, MPRB) cocrystallizes with p -hydroxybenzoic acid (HBA) at the 1:1 ratio. The complex is characterized by single-crystal X-ray diffraction, FTIR and NMR spectra. The pyrrolidinium ring adopts an envelope conformation with the methyl group in axial and the carboxymethyl substituent in the equatorial positions. In the cocrystal the COO⋯HO and COO⋯HOOC hydrogen bonds are of 2.574 (4) and 2.586 (4) Å, respectively. The molecular geometry, Hirshfeld surface, natural bond orbitals (NBO), molecular electrostatic potential (MEP), vibrational wavenumbers, magnetic isotropic shielding constants were performed using the density functional theory (DFT/B3LYP) with 6–311++G (d,p) basis set. The molecular structures of isolated 1:1 and 1:2 complexes were optimized. The potential energy distribution (PED) of the IR vibrational modes were used to assign the bands in the IR spectrum. Diagrams of the HOMO and LUMO of components and complex are presented. Theoretical and experimental results are in a good agreement. Image 1 • The 1:1 complex of N-methylpyrrolidine betaine with p -hydroxybenzoic acid was prepared. • Structure of complexes were characterized by X-ray diffraction, FTIR and NMR spectra. • The structures of 1:1 and 1:2 complexes were optimized by the B3LYP/6-311++G(d,p) approach. • The molecules are linked through the OH∙∙∙OOC and COOH∙∙∙OOC hydrogen-bonds. • The IR and NMR experimental and computed spectra were discussed. [ABSTRACT FROM AUTHOR]