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Background: Echinoderms are established models in experimental and developmental biology, however genomic resources are still lacking for many species. Here, we present the draft genome of Ophioderma brevispinum, an emerging model organism in the field of regenerative biology. This new genomic resource provides a reference for experimental studies of regenerative mechanisms. Results: We report a de novo nuclear genome assembly for the brittle star O. brevispinum and annotation facilitated by the transcriptome assembly. The final assembly is 2.68 Gb in length and contains 146,703 predicted protein-coding gene models. We also report a mitochondrial genome for this species, which is 15,831 bp in length, and contains 13 protein-coding, 22 tRNAs, and 2 rRNAs genes, respectively. In addition, 29 genes of the Notch signaling pathway are identified to illustrate the practical utility of the assembly for studies of regeneration. Conclusions: The sequenced and annotated genome of O. brevispinum presented here provides the first such resource for an ophiuroid model species. Considering the remarkable regenerative capacity of this species, this genome will be an essential resource in future research efforts on molecular mechanisms regulating regeneration. [ABSTRACT FROM AUTHOR]

The peristomial plates are skeletal components of the interbrachial frame (or mouth frame), which is located below the true mouth of ophiuroids. Whilst the peristomial plates were extensively described and used as diagnostic characters by some early workers, for the past 100 years they have been largely neglected as a taxonomic resource. In this investigation the peristomial plates of 48 species representing 21 families were examined directly, and information on a further 61 species, including representatives of another eight families, was obtained from the published literature. Observations were made with regard to fragmentation state, relative size and orientation of the peristomial plates. Although fragmentation state showed little consistency at any taxonomic level, relative size and orientation segregated a group of families comprising species with relatively small, inclined peristomial plates, viz. Ophiotrichidae, Ophiopholidae, Ophiactidae, Amphiuridae and Ophiocomidae, together with a single hemieuryalid species–Ophioplocus januarii. The distribution of peristomial plate traits was strongly correlated with that of several other character states pertaining to the interbrachial frame. This supported the proposition that two major types of interbrachial frame are present in ophiuroids (designated ‘A’ and ‘B’). Current phylogenies inferred from both morphological and molecular data imply that type B is derived and has evolved independently at least twice in the orders Amphilepidida and Ophiacanthida. This represents a remarkable example of evolutionary convergence. An analysis of the distribution of all interbrachial frame character states suggested that within the Amphilepidida paedomorphosis was probably responsible for the complete reversion of the interbrachial frame to the ancestral type A condition in two families (Ophiothamnidae and Amphilepididae) of suborder Gnathophiurina and possibly responsible for varying degrees of trait reversal in the four families of suborder Ophionereidina. Such paedomorphic events may have been associated with a secondary return to the deep-sea from shallow-sea environments. [ABSTRACT FROM AUTHOR]

Ophiopeza spinosa, a small ophiodermatid ophiuroid, is locally abundant in shallow water rubble habitat at Lizard Island, northern Great Barrier Reef, Australia. This species is a protantric hermaphrodite. The switch from reproduction as a male to a female is progressive, involving a simultaneous hermaphrodite as a transitional stage. Members of O. spinosa brood their young in the respiratory bursae. Cohorts of eggs (280 μm diameter) develop synchronously in the gonad and are spawned as a group into the bursa. Despite non-pelagic development, the larvae of O. spinosa are a vitellaria type typical of broadcast-spawning ophiodermatids, providing a link to an ancestral form with a dispersive larva. The vitellaria has prominent ciliary bands and swims in the same manner as pelagic vitellaria. In vitro, the larvae developed to the juvenile stage independent of the parent. There was no evidence of extraembryonic nutrition; a proportion of the maternal provisions were retained through metamorphosis. This is the first ophiuroid known to brood a pelagic-type vitellaria larva. Juveniles appear to leave the parent at the two- to three-arm segment stage, slightly larger than the newly settled juveniles of ophiodermatids with pelagic vitellariae. The presence of functional larvae in the bursa suggests a recent switch to the incubatory life history in O. spinosa and the possibility of a reversal back to a dispersive life history. O. spinosa have the potential to both brood and broadcast their young. [ABSTRACT FROM AUTHOR]

Presents a study which determined the effects of variable water motion on patterns of regeneration in the subtidal burrowing brittlestar Hemipholis elongata. Factor that contributes to the regenerative plasticity of echinoderm skeletons; Definition of phenotypic plasticity; Results of the study.