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Background: Plant long non-coding RNAs (lncRNAs) play vital roles in many biological processes mainly through interactions with RNA-binding protein (RBP). To understand the function of lncRNAs, a fundamental method is to identify which types of proteins interact with the lncRNAs. However, the models or rules of interactions are a major challenge when calculating and estimating the types of RBP., Results: In this study, we propose an ensemble deep learning model to predict plant lncRNA-protein interactions using stacked denoising autoencoder and convolutional neural network based on sequence and structural information, named PRPI-SC. PRPI-SC predicts interactions between lncRNAs and proteins based on the k-mer features of RNAs and proteins. Experiments proved good results on Arabidopsis thaliana and Zea mays datasets (ATH948 and ZEA22133). The accuracy rates of ATH948 and ZEA22133 datasets were 88.9% and 82.6%, respectively. PRPI-SC also performed well on some public RNA protein interaction datasets., Conclusions: PRPI-SC accurately predicts the interaction between plant lncRNA and protein, which plays a guiding role in studying the function and expression of plant lncRNA. At the same time, PRPI-SC has a strong generalization ability and good prediction effect for non-plant data., (© 2021. The Author(s).)

Convenient and accurate blood pressure (BP) measurement is of great importance in both clinical and daily life. Although deep learning (DL) can achieve cuff-less BP measurement based on Photoplethysmography (PPG), the performance of DL is affected by few-shot data. Data augmentation becomes an effective way to enhance the size of the training data. In this paper, we use cropping, flipping, DTW barycentric averaging (DBA), generative adversarial network (GAN) and variational auto-encoder (VAE) for the data augmentation of PPG. Furthermore, a PE–CNN–GRU model is designed for cuff-less BP measurement applying position encoding (PE), convolutional neural networks (CNNs) and gated recurrent unit (GRU) networks. Experiment results based on real-life datasets show that VAE is the most suitable method for PPG data augmentation, which can reduce the mean absolute error (MAE) of PE–CNN–GRU when measuring systolic blood pressure (SBP) and diastolic blood pressure (DBP) by 18.80% and 19.84%. After the data augmentation of PPG, PE–CNN–GRU achieves accurate and cuff-less BP measurement, thus providing convenient support for preventing cardiovascular diseases. [ABSTRACT FROM AUTHOR]

This paper presents a deep framework EddyDet to automatically detect oceanic eddies in Synthetic Aperture Radar (SAR) images. The EddyDet has been developed using the Mask Region with Convolutional Neural Networks (Mask RCNN) framework, incorporating two new branches: Edge Head and Mask Intersection over Union (IoU) Head. The Edge Head can learn internal texture information implicitly, and the Mask IoU Head improves the quality of predicted masks. A SAR dataset for Oceanic Eddy Detection (SOED) is specifically constructed to evaluate the effectiveness of the EddyDet model in detecting oceanic eddies. We demonstrate that the EddyDet is capable of achieving acceptable eddy detection results under the condition of limited training samples, which outperforms a Mask RCNN baseline in terms of average precision. The combined Edge Head and Mask IoU Head have the ability to describe the characteristics of eddies more correctly, while the EddyDet shows great potential in practice use accurately and time efficiently, saving manual labor to a large extent. [ABSTRACT FROM AUTHOR]

In the field of state-of-the-art object detection, the task of object localization is typically accomplished through a dedicated subnet that emphasizes bounding box regression. This subnet traditionally predicts the object's position by regressing the box's center position and scaling factors. Despite the widespread adoption of this approach, we have observed that the localization results often suffer from defects, leading to unsatisfactory detector performance. In this paper, we address the shortcomings of previous methods through theoretical analysis and experimental verification and present an innovative solution for precise object detection. Instead of solely focusing on the object's center and size, our approach enhances the accuracy of bounding box localization by refining the box edges based on the estimated distribution at the object's boundary. Experimental results demonstrate the potential and generalizability of our proposed method. [ABSTRACT FROM AUTHOR]

Three-dimensional (3D) point cloud classification methods based on deep learning have good classification performance; however, they adapt poorly to diverse datasets and their classification accuracy must be improved. Therefore, FSDCNet, a neural network model based on the fusion of static and dynamic convolution, is proposed and applied for multiview 3D point cloud classification in this paper. FSDCNet devises a view selection method with fixed and random viewpoints, which effectively avoids the overfitting caused by the traditional fixed viewpoint. A local feature extraction operator of dynamic and static convolution adaptive weight fusion was designed to improve the model's adaptability to different types of datasets. To address the problems of large parameters and high computational complexity associated with the current methods of dynamic convolution, a lightweight and adaptive dynamic convolution operator was developed. In addition, FSDCNet builds a global attention pooling, integrating the most crucial information on different view features to the greatest extent. Due to these characteristics, FSDCNet is more adaptable, can extract more fine-grained detailed information, and can improve the classification accuracy of point cloud data. The proposed method was applied to the ModelNet40 and Sydney Urban Objects datasets. In these experiments, FSDCNet outperformed its counterparts, achieving state-of-the-art point cloud classification accuracy. For the ModelNet40 dataset, the overall accuracy (OA) and average accuracy (AA) of FSDCNet in a single view reached 93.8% and 91.2%, respectively, which were superior to those values for many other methods using 6 and 12 views. FSDCNet obtained the best results for 6 and 12 views, achieving 94.6%, 93.3%, 95.3%, and 93.6% in OA and AA metrics, respectively. For the Sydney Urban Objects dataset, FSDCNet achieved an OA and F1 score of 81.2% and 80.1% in a single view, respectively, which were higher than most of the compared methods. In 6 and 12 views, FSDCNet reached an OA of 85.3% and 83.6% and an F1 score of 85.5% and 83.7%, respectively. [ABSTRACT FROM AUTHOR]

• A parallel deep neural network model is proposed to makes full use of the heterogeneous information. • It solves two challenges when using high-dimensional sparse binary feature representation for deep learning. • It provides a novel and more effective data representation strategy of pharmaceutical chemical structure. With the rapid development of deep learning techniques and large-scale genomics database, it is of great potential to apply deep learning to the prediction task of anticancer drug sensitivity, which can effectively improve the identification efficiency and accuracy of therapeutic biomarkers. In this study, we propose a parallel deep learning framework DNN-PNN, which integrates rich and heterogeneous information from gene expression and pharmaceutical chemical structure data. With the proposal of DNN-PNN, a new and more effective drug data representation strategy is introduced, that is, the correlation between features is represented by product, which alleviates the limitations of high-dimensional discrete data in deep learning. Furthermore, the framework is optimized to reduce the time complexity of the model. We conducted extensive experiments on the CCLE datasets to compare DNN-PNN with its variant DNN-FM representing the traditional feature correlation model, the component DNN or PNN alone, and the common machine learning models. It is found that DNN-PNN not only has high prediction accuracy, but also has significant advantages in stability and convergence speed. [ABSTRACT FROM AUTHOR]