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Accurate and efficient segmentation of coronary arteries from CTA images is crucial for diagnosing and treating cardiovascular diseases. This study proposes a structured approach that combines vesselness enhancement, heart region of interest (ROI) extraction, and the ResUNet deep learning method to accurately and efficiently extract coronary artery vessels. Vesselness enhancement and heart ROI extraction significantly improve the accuracy and efficiency of the segmentation process, while ResUNet enables the model to capture both local and global features. The proposed method outperformed other state-of-the-art methods, achieving a Dice similarity coefficient (DSC) of 0.867, a Recall of 0.881, and a Precision of 0.892. The exceptional results for segmenting coronary arteries from CTA images demonstrate the potential of this method to significantly contribute to accurate diagnosis and effective treatment of cardiovascular diseases.

Diabetes is one of the leading fatal diseases globally, putting a huge burden on the global healthcare system. Early diagnosis of diabetes is hence, of utmost importance and could save many lives. However, current techniques to determine whether a person has diabetes or has the risk of developing diabetes are primarily reliant upon clinical biomarkers. In this article, we propose a novel deep learning architecture to predict if a person has diabetes or not from a photograph of his/her retina. Using a relatively small-sized dataset, we develop a multi-stage convolutional neural network (CNN)-based model DiaNet that can reach an accuracy level of over 84% on this task, and in doing so, successfully identifies the regions on the retina images that contribute to its decision-making process, as corroborated by the medical experts in the field. This is the first study that highlights the distinguishing capability of the retinal images for diabetes patients in the Qatari population to the best of our knowledge. Comparing the performance of DiaNet against the existing clinical data-based machine learning models, we conclude that the retinal images contain sufficient information to distinguish the Qatari diabetes cohort from the control group. In addition, our study reveals that retinal images may contain prognosis markers for diabetes and other comorbidities like hypertension and ischemic heart disease. The results led us to believe that the inclusion of retinal images into the clinical setup for the diagnosis of diabetes is warranted in the near future.

Cardiovascular diseases (CVD) are the leading cause of death worldwide. People affected by CVDs may go undiagnosed until the occurrence of a serious heart failure event such as stroke, heart attack, and myocardial infraction. In Qatar, there is a lack of studies focusing on CVD diagnosis based on non-invasive methods such as retinal image or dual-energy X-ray absorptiometry (DXA). In this study, we aimed at diagnosing CVD using a novel approach integrating information from retinal images and DXA data. We considered an adult Qatari cohort of 500 participants from Qatar Biobank (QBB) with an equal number of participants from the CVD and the control groups. We designed a case-control study with a novel multi-modal (combining data from multiple modalities—DXA and retinal images)—to propose a deep learning (DL)-based technique to distinguish the CVD group from the control group. Uni-modal models based on retinal images and DXA data achieved 75.6% and 77.4% accuracy, respectively. The multi-modal model showed an improved accuracy of 78.3% in classifying CVD group and the control group. We used gradient class activation map (GradCAM) to highlight the areas of interest in the retinal images that influenced the decisions of the proposed DL model most. It was observed that the model focused mostly on the centre of the retinal images where signs of CVD such as hemorrhages were present. This indicates that our model can identify and make use of certain prognosis markers for hypertension and ischemic heart disease. From DXA data, we found higher values for bone mineral density, fat content, muscle mass and bone area across majority of the body parts in CVD group compared to the control group indicating better bone health in the Qatari CVD cohort. This seminal method based on DXA scans and retinal images demonstrate major potentials for the early detection of CVD in a fast and relatively non-invasive manner.

Long non-coding RNAs (lncRNA), the pervasively transcribed part of the mammalian genome, have played a significant role in changing our protein-centric view of genomes. The abundance of lncRNAs and their diverse roles across cell types have opened numerous avenues for the research community regarding lncRNAome. To discover and understand lncRNAome, many sophisticated computational techniques have been leveraged. Recently, deep learning (DL)-based modeling techniques have been successfully used in genomics due to their capacity to handle large amounts of data and produce relatively better results than traditional machine learning (ML) models. DL-based modeling techniques have now become a choice for many modeling tasks in the field of lncRNAome as well. In this review article, we summarized the contribution of DL-based methods in nine different lncRNAome research areas. We also outlined DL-based techniques leveraged in lncRNAome, highlighting the challenges computational scientists face while developing DL-based models for lncRNAome. To the best of our knowledge, this is the first review article that summarizes the role of DL-based techniques in multiple areas of lncRNAome.