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Deep learning has attracted rapidly increasing attention in the field of tomographic image reconstruction, especially for CT, MRI, PET/SPECT, ultrasound and optical imaging. Among various topics, sparse-view CT remains a challenge which targets a decent image reconstruction from ultra-sparse projections. To address this challenge, in this article we propose a Dual-domain Residual-based Optimization NEtwork (DRONE). DRONE consists of three modules respectively for embedding, refinement, and awareness. In the embedding module, a sparse sinogram is first extended. Then, sparse-view artifacts are effectively suppressed by the image domain networks. After that, the refinement module focuses on the recovery of image details in the residual data and image domains synergistically. Finally, the results from embedding and refinement components in the data and image domains are regularized for optimized image quality in the awareness module, which ensures the consistency between measurements and images with the kernel awareness of compressed sensing. The DRONE network is trained, validated, and tested on preclinical and clinical datasets, demonstrating its merits in edge preservation, feature recovery, and reconstruction accuracy.

While micro-CT systems are instrumental in preclinical research, clinical micro-CT imaging has long been desired with cochlear implantation as a primary example. The structural details of the cochlear implant and the temporal bone require a significantly higher image resolution than that (about 0.2 mm) provided by current medical CT scanners. In this paper, we propose a clinical micro-CT (CMCT) system design integrating conventional spiral cone-beam CT, contemporary interior tomography, deep learning techniques, and technologies of micro-focus X-ray source, photon-counting detector (PCD), and robotic arms for ultrahigh resolution localized tomography of a freely-selected volume of interest (VOI) at a minimized radiation dose level. The whole system consists of a standard CT scanner for a clinical CT exam and VOI specification, and a robotic-arm based micro-CT scanner for a local scan at much higher spatial and spectral resolution as well as much reduced radiation dose. The prior information from global scan is also fully utilized for background compensation to improve interior tomography from local data for accurate and stable VOI reconstruction. Our results and analysis show that the proposed hybrid reconstruction algorithm delivers superior local reconstruction, being insensitive to the misalignment of the isocenter position and initial view angle in the data/image registration while the attenuation error caused by scale mismatch can be effectively addressed with bias correction. These findings demonstrate the feasibility of our system design. We envision that deep learning techniques can be leveraged for optimized imaging performance. With high resolution imaging, high dose efficiency and low system cost synergistically, our proposed CMCT system has great potentials in temporal bone imaging as well as various other clinical applications., Comment: 10 pages, 13 figures, 3 tables

The phase function is a key element of a light propagation model for Monte Carlo (MC) simulation, which is usually fitted with an analytic function with associated parameters. In recent years, machine learning methods were reported to estimate the parameters of the phase function of a particular form such as the Henyey-Greenstein phase function but, to our knowledge, no studies have been performed to determine the form of the phase function. Here we design a convolutional neural network to estimate the phase function from a diffuse optical image without any explicit assumption on the form of the phase function. Specifically, we use a Gaussian mixture model as an example to represent the phase function generally and learn the model parameters accurately. The Gaussian mixture model is selected because it provides the analytic expression of phase function to facilitate deflection angle sampling in MC simulation, and does not significantly increase the number of free parameters. Our proposed method is validated on MC-simulated reflectance images of typical biological tissues using the Henyey-Greenstein phase function with different anisotropy factors. The effects of field of view (FOV) and spatial resolution on the errors are analyzed to optimize the estimation method. The mean squared error of the phase function is 0.01 and the relative error of the anisotropy factor is 3.28%., Comment: 16 pages, 8 figures

The extensive use of medical CT has raised a public concern over the radiation dose to the patient. Reducing the radiation dose leads to increased CT image noise and artifacts, which can adversely affect not only the radiologists judgement but also the performance of downstream medical image analysis tasks. Various low-dose CT denoising methods, especially the recent deep learning based approaches, have produced impressive results. However, the existing denoising methods are all downstream-task-agnostic and neglect the diverse needs of the downstream applications. In this paper, we introduce a novel Task-Oriented Denoising Network (TOD-Net) with a task-oriented loss leveraging knowledge from the downstream tasks. Comprehensive empirical analysis shows that the task-oriented loss complements other task-agnostic losses by steering the denoiser to enhance the image quality in the task related regions of interest. Such enhancement in turn brings general boosts on the performance of various methods for the downstream task. The presented work may shed light on the future development of context-aware image denoising methods. Code is available at https://github.com/DIAL-RPI/Task-Oriented-CT-Denoising_TOD-Net.

Spectral computed tomography (CT) has attracted much attention in radiation dose reduction, metal artifacts removal, tissue quantification and material discrimination. The x-ray energy spectrum is divided into several bins, each energy-bin-specific projection has a low signal-noise-ratio (SNR) than the current-integrating counterpart, which makes image reconstruction a unique challenge. Traditional wisdom is to use prior knowledge based iterative methods. However, this kind of methods demands a great computational cost. Inspired by deep learning, here we first develop a deep learning based reconstruction method; i.e., U-net with L_p^p-norm, Total variation, Residual learning, and Anisotropic adaption (ULTRA). Specifically, we emphasize the Various Multi-scale Feature Fusion and Multichannel Filtering Enhancement with a denser connection encoding architecture for residual learning and feature fusion. To address the image deblurring problem associated with the $L_2^2$-loss, we propose a general $L_p^p$-loss, $p>0$ Furthermore, the images from different energy bins share similar structures of the same object, the regularization characterizing correlations of different energy bins is incorporated into the $L_p^p$-loss function, which helps unify the deep learning based methods with traditional compressed sensing based methods. Finally, the anisotropically weighted total variation is employed to characterize the sparsity in the spatial-spectral domain to regularize the proposed network. In particular, we validate our ULTRA networks on three large-scale spectral CT datasets, and obtain excellent results relative to the competing algorithms. In conclusion, our quantitative and qualitative results in numerical simulation and preclinical experiments demonstrate that our proposed approach is accurate, efficient and robust for high-quality spectral CT image reconstruction.

Deep learning has become the most powerful tool for action recognition in recent years. The aim of this paper is to investigate the proper convolutional network architecture to classify poleward moving auroras (PMAs). The first challenge is that the auroral images have complex morphological and motion characteristics, so it is difficult to get the discriminative motion information to recognize the PMA events. Second, the imbalanced dataset will cause the serious problems, such as the network tends to identify a given sequence as the majority of events (non-PMAs). To address these issues, we use 3D ResNet-18 to get the motion information of auroral image sequence based on optical flow and also use the spatial attention mechanism to make the network pay more attention to PMA events. The empirical results demonstrate that our method achieves significant performance improvement compared with the previous method.