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Surveys and surveillances were carried out during 2004 to 2022 to record the biodiversity of weevil species on the fruit crops in the Punjab state, India. Atotal of eight species of weevils viz., Arrhenodes sp., Deporaus marginatus (Pascoe), Hypolixus truncatulus (Fabricius), Mecopus hopei Rosenschoeld, Myllocerus undecimpustulatus Faust, Peltotrachelus cognatus Marshall, Rhynchaenus mangiferae Marshall and Xanthochelus major (Herbst) were observed to occur on seventeen fruit crops viz., kinnow mandarin, guava, mango, pear, litchi, ber, peach, plum, grapes, jamun, pomegranate, loquat, fig, bael or wood apple, phalsa, papaya and apple in different districts of Punjab. Highest number of species were observed in mango (5), followed by guava, ber, jamun and fig (2 each) while only one species was observed in kinnow mandarin, pear, litchi, peach, plum, grapes, pomegranate, loquat, bael, phalsa, papaya and apple. These weevils were observed to damage leaves, stem, bark, flowers and fruits. The damage caused by these weevils on different hosts ranged between 2-3 per cent for most species except, D. marginatus (10%) and R. mangiferae (8%). Further studies on their biology, life cycle, population dynamics and management are needed. [ABSTRACT FROM AUTHOR]

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The article studies the growth and development of red raspberry (Rubus idaelus L.), Nanjing cherry (Prunus tomentosa Thunb.), golden currants (Ribes aureum Pursh.), and sea buckthorn (Hippophaerhamnoides L.) in the variants of the experiment polymer gel + film + additional wetting by rainwater and meltwater runoff; polymer gel + film; polymer gel; control (without polymer gel and film). It was established that the use of a mulching black film could increase the moisture content of the root zone by up to 40%. When determining the water deficit, it was found that the experimental plants lost less moisture. Under the influence of hydrogels, the irrigation depth of fruit and berry crops was reduced by 50%. It was found that the black mulch film had a warming effect on the soil, which also had a positive effect on plant growth and development increasing the root zone temperature. Red raspberry bushes formed better when using hydrogels in the soil; during seasonal observations, an increased number of first-year canes was noted up to 2.5 higher than in the control. The hydrogel and mulching film had the best effect on Nanjing cherries, increasing the number of leaves on experimental plants and formed fruit shoots. Sea buckthorn under the film exceeded biometric indicators by 2 times vs the control plants. In golden currant plants, the best growth and development were observed in the variant using hydrogel and mulching film; foundation stocks developed intensively and bore fruit better with the experiment continuation, it is possible to obtain high profits from the sale of grown products. The use of hydrogels and mulch film reduces herbicide costs by reducing weeds and producing organic fruits and berries. [ABSTRACT FROM AUTHOR]

The health risks linked to the consumption of microcystin-accumulating crops have been increasing worldwide in toxic cyanobloom-occurring regions. The bioaccumulation of microcystins (MCs) in agricultural produce at environmentally realistic concentrations is poorly investigated. In this field study, we assessed the health risks of MCs in raw water used for irrigating fruit crops (bioaccumulation) and watering farm animals in the Lalla Takerkoust agricultural region (Marrakesh, Morocco). Thus, MCs were extracted from water and fruit samples and quantified by enzyme-linked immunosorbent assay in order to calculate the health risk indicators. MCs posed a high health-risk level to poultry and horses, with estimated daily intakes (EDI) being 14- and 19-fold higher than the recommended limits (3.1 and 2.3 μg MC-LR L−1), respectively. Furthermore, pomegranate posed the same level of risk, with EDI being 22- and 53-fold higher than the limit dose (0.04 μg MC-LR kg−1) for adults and children, respectively. There was an urgent need for guidelines regarding water use and management in MC-polluted areas, besides the setup of nature-based tools for toxin removal from raw water used in farming practices. Moreover, MCs could contaminate the human food chain, which implies further investigations of their potential accumulation in livestock- and poultry-based food. [ABSTRACT FROM AUTHOR]

Fruits are widely regarded as protective food necessary for maintaining human health. Though growing fruit crops is a highly remunerative enterprise, their cultivation faces many challenges like fluctuations in climatic factors, irregular bearing, pests and diseases etc. This causes instability in production and productivity with low economic returns from per unit area. Alternate bearer fruit cultivars are one of the serious economic problems to the fruit growers. Physiological factors like carbohydrate reserves, nutrient metabolism and phytohormones are known to be involved in flowering thereby regulating bearing habit. Draining out of carbohydrate and nitrogen reserves during ‘On’ year is known to lead to a lean crop in the ‘Off’ year as they are important for fruit bud initiation i.e., high C/N ratio helps for fruit bud initiation. The developing fruit provides a strong sink for photo assimilates. It was therefore, thought that depletion of photo assimilates, especially carbohydrates from the bud which prevents flowering induction, a hypothesis known as the nutritional theory. Knowledge about impact of carbohydrates and nutrients along with other important factors influencing flowering process is helpful in understanding the phenomena of bearing in fruit crops. [ABSTRACT FROM AUTHOR]

This study analyses the diversity of leafhopper fauna at six locations (Wadura, Arampora, Dangiwacha, Imberzalwari from District Baramulla and Chogul and Chetkak from District Kupwara) occurring on various fruit crops and weeds. Diversity indices such as species diversity index, evenness index, richness index and abundance were computed. These reveal that six species infest these, of which those infesting fruit trees include Empoasca decipiens, Empoasca fabae, Agallia spp., Aconeurella erebrus and Exitianus indicus; and Stirellus spp., Maiestas dorsalis, Macrosteles quadrilineatus, Exitianus indicus and one plant hopper species viz., Laodelphax striatellus infest weeds. Maximum abundance was observed to be of A. decedens on fruit trees and Stirellus spp. on the weed flora. Keywords: Kashmir, fruit crops, weeds, leafhoppers, planthoppers, diversity indices, abundance, species diversity, richness, Laodelphax striatellus infest weeds. Maximum fruit trees and Stirellus spp. on the weed flora. [ABSTRACT FROM AUTHOR]

The water status of fruit and nut crops is critical to the high productivity, quality and value of these crops. Water status is often estimated and managed with indirect measurements of soil moisture and models of evapotranspiration. However, cultivated trees and vines have characteristics and associated cultural practices that complicate such methods, particularly variable discontinuous canopies, and extensive but low-density, variable root systems with relatively high hydraulic resistance. Direct and continuous measurement of plant water status is desirable in these crops as the plant integrates its unique combination of weather, soil and cultural factors. To measure plant water potential with high temporal sampling rates, a stem-embedded microchip microtensiometer sensor has been developed and tested in several fruit crops for long-term continuous monitoring of stem water potential. Results on several fruit crops in orchards and vineyards have been good to excellent, with very good correlations to the pressure chamber standard method. The primary challenge has been establishing and maintaining the intimate contact with the xylem for long periods of time, with variable stem anatomies, stem growth and wound reactions. Sources of variability in the measurements and utilization of the continuous data stream, in relation to irrigation scheduling, are discussed. Direct continuous and long-term field measurements are possible and provide unique opportunities for both research and farming. [ABSTRACT FROM AUTHOR]

Plant genome editing tools as Zinc-Finger Nucleases (ZFNs), Trans Activator-Like Effector Nucleases (TALENs), and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) associated with Cas proteins are offering new possibilities for crop improvement and new insights for functional genomics. In this review, we discuss (i) the new findings in gene editing technologies, (ii) a comparison between them, and (iii) their applications for genetic analysis and manipulation of fruit crops. Different editing technologies, especially the CRISPR/Cas9 system, were successfully used in fruit crops such as apple, banana, cacao, citrus, grape, kiwifruit, and pear. Experimental designs used to analyze the efficiency of the CRISPR/Cas9 genome editor are presented, including manipulating key genes associated with carotenoid biosynthesis that could allow the development of complete albino and variegated phenotypes in some cultivars. The most recent outcomes of the application of genome-editing tools to improve the quality and yields of fruit crops, such as manipulation of juvenile phase and flowering period, gibberellin biosynthesis and generation of dwarf cultivars, ethylene biosynthesis, fruit ripening and parthenocarpy, development of resistant/tolerant cultivars to numerous pests and diseases are also summarized. [ABSTRACT FROM AUTHOR]

The objects of the study were microcuttings of rootstocks of fruit crops Myrobalan 29C, MaxMa 14, Garnem 15, GF 677 and OHF 87, as well as MS and DKW nutrient media modified with various combinations and concentrations of auxins and cytokinins (IBA, NAA, BAP) in 5 variants. It was found that the optimal medium for rooting micro plants of MaxMa 14 rootstock was DKW medium with 1.0 mg/l IBA and 0.01 mg/l NAA (rooting - 82%, average number of roots - 4.2 pcs, average root length - 4.3 cm). Optimal rooting of micro plants of the rootstock Myrobalan 29C (rooting - 80.0%, average number of roots - 4.0 pcs, average length of roots - 3.5 cm), Garnem 15 (rooting - 88.0%, average number of roots - 3, 7 pcs, average root length - 2.9 cm), GF 677 (rooting - 80.0%, average number of roots - 4.7 pcs, average root length - 3.2 cm), and OHF 87 (rooting - 80, 0%, the average number of roots is 6.5 pcs, the average length of the roots is 2.9 cm) was noted on MS medium using IBA at a concentration of 1.0 mg/l and NAA at a concentration of 0.1 mg/l. In addition, there was no significant change in the efficiency of rootstock rooting of fruit crops under in vitro conditions, depending on the passage. [ABSTRACT FROM AUTHOR]

Roving survey was conducted in Vijaypur and Bagalkot districts of northern Karnataka, India, to know the coccid pests status on major fruit crops viz., grape, guava, lime, papaya, pomegranate and sapota. The identified coccid pests were Maconellicoccus hirsutus (Green) and Ferrisia virgata (Cockerel) on grape; Icerya purchasi (Maskell) on lime and guava; there was single specimen Phenococcus solenopsis (Tinsley) on mesta crop; Chrysomphalus aonidum (Linnaeus) on pummelo; Ferrisia virgata (Cockerel) and Nipaecoccus viridis (Newstead) on custard apple; Drepanococcus sp. on pegionpea, and Pinnaspis strachani (Cooley) on lime. No coccid pests were observed on pomegranate, papaya and sapota during the survey period. [ABSTRACT FROM AUTHOR]

Colletotrichum is one of the most significant and common plant pathogens, infecting many economically important crops worldwide. Colletotrichum is also one of the most studied fungal genera in Malaysia because it contains many species that infect various types of agricultural crop including fruit, vegetable and industrial crops. Studies on Colletotrichum spp. are mostly focused on the causal pathogens, the host range and disease management. Among the host crops, most studies on Colletotrichum spp. have been conducted on infection in chilli (Capsicum spp.), which, in Malaysia, first arose in the 1980s and still continues to be a problem to this day. Studies have also been conducted on Colletotrichum spp. associated with anthracnose in fruit crops including dragon fruit, papaya, banana and mango. Disease management of anthracnose pathogens postharvest has also been conducted to prolong the shelf life of these fruit crops. In this review, Colletotrichum spp. associated with chilli and several fruit crops as well as their disease management are highlighted. There have been many changes in Colletotrichum taxonomy and systematics in recent years, affecting the identification of anthracnose pathogens reported in Malaysia. Colletotrichum species identified solely by morphology or solely via the internal transcribed spacer (ITS) region should be referred to as sensu lato (in the broad sense) since many species belong to species complexes. Species within a species complex are closely related, and most are cryptic species particularly species in the C. gloeosporioides and C. acutatum complexes which are commonly associated with agricultural crops in Malaysia. Due to the importance of Colletotrichum spp. as plant pathogens, up-to-date identification methods should be used since accurate species identification of Colletotrichum is crucial for formulating suitable disease management programmes as well as for plant quarantine and biosecurity purposes. This review provides the current knowledge on the status of Colletotrichum spp. associated with agricultural crops in Malaysia and potential control methods on different types of agricultural crops. [ABSTRACT FROM AUTHOR]

This study evaluates the dynamics of soil organic carbon (SOC) under perennial crops across the globe. It quantifies the effect of change from annual to perennial crops and the subsequent temporal changes in SOC stocks during the perennial crop cycle. It also presents an empirical model to estimate changes in the SOC content under crops as a function of time, land use, and site characteristics. We used a harmonized global dataset containing paired‐comparison empirical values of SOC and different types of perennial crops (perennial grasses, palms, and woody plants) with different end uses: bioenergy, food, other bio‐products, and short rotation coppice. Salient outcomes include: a 20‐year period encompassing a change from annual to perennial crops led to an average 20% increase in SOC at 0–30 cm (6.0 ± 4.6 Mg/ha gain) and a total 10% increase over the 0–100 cm soil profile (5.7 ± 10.9 Mg/ha). A change from natural pasture to perennial crop decreased SOC stocks by 1% over 0–30 cm (−2.5 ± 4.2 Mg/ha) and 10% over 0–100 cm (−13.6 ± 8.9 Mg/ha). The effect of a land use change from forest to perennial crops did not show significant impacts, probably due to the limited number of plots; but the data indicated that while a 2% increase in SOC was observed at 0–30 cm (16.81 ± 55.1 Mg/ha), a decrease in 24% was observed at 30–100 cm (−40.1 ± 16.8 Mg/ha). Perennial crops generally accumulate SOC through time, especially woody crops; and temperature was the main driver explaining differences in SOC dynamics, followed by crop age, soil bulk density, clay content, and depth. We present empirical evidence showing that the FAO perennialization strategy is reasonable, underscoring the role of perennial crops as a useful component of climate change mitigation strategies. [ABSTRACT FROM AUTHOR]

The Spotted Wing Drosophila (SWD), Drosophila suzukii Matsumura is an invasive pest species in Europe and the Americas.It is able to feed and reproduce on numerous fruit crops and a wide range of wild host plants. The purpose of the study was to establish the current status of Drosophila suzukii in the region of Southwestern Bulgaria, identify the hosts (cultural and wild) and to deepen the study of pest behavior. The studies were conducted in 2012-2018 in fruit-bearing orchards. Different kind of attractant traps were used to monitor Drosophila suzukii. For the first time in the region of Kyustendil D. suzukii was found in September 2014 in a plum plantation. Its density was found to increase from 2 in 2014 to 2813 in 2018. Most adults were caught in raspberry and plum plantations and significantly lower number in cherries. The multiplication of the pest begins in late summer and it reaches its peak in September . [ABSTRACT FROM AUTHOR]

Salinity in soil and water is a critical factor that is causing hindrance in crop production under salt affected areas. Plant metabolic activities are apparently restricted due to accumulation of salt. The event of salt stress happens to be the reason of severe alteration in the sequence of plant growth and development which ultimately reduces the survivability of plants. The physiological and biochemical mechanisms of tolerance to various osmotic and ionic components of salinity stress are evaluated at the cellular, organ and whole plant level. The course of adaptation towards salinity stress could be of various types such as avoidance, exclusion, extrusion, ion compartmentalization etc. Appropriate understanding of mechanism involved in salt tolerance at different levels in plant tissues provide a new opportunity to integrate physiological and biochemical knowledge to improve the salinity tolerance of fruit crops, especially from the nutritional aspect. Such information not only helpful in escalating the productivity in salt affected areas, but also facilitate in bringing relatively more salt affected areas under cultivation. [ABSTRACT FROM AUTHOR]

Apple trees are extensively cultivated worldwide but are often affected by zinc (Zn) deficiency. Limited knowledge regarding Zn remobilization within fruit crops has hampered the development of efficient strategies for providing adequate amounts of Zn. In the present study, Zn distribution and remobilization were compared among apple trees cultivated under different Zn conditions. Without Zn application, plants showed visible symptoms of Zn deficiency at the shoot tips after 1 year but appeared to grow normally during the first 6 months (early stage of Zn deficiency). Compared with apple plants under sufficient Zn treatment, plants suffering from early‐stage Zn deficiency showed preferential Zn distribution to young leaves and higher Zn levels in phloem, demonstrating that hidden Zn deficiency triggers a highly efficient remobilization of Zn in this species. The in vivo Zn‐nicotianamine complex in phloem tissues, combined with the significant enhanced expression of MdNAS3 and MdYSL6, suggested a positive role for nicotianamine in the phloem remobilization of Zn. These results strongly suggest that a proportion of Zn in the old leaves of apple trees can be efficiently remobilized by phloem transport to the shoot tips, partially in the form of Zn‐nicotianamine, thus protecting apple trees against the early stages of Zn deficiency. The existing lack of knowledge related to the remobilization of zinc by phloem transport in fruit crops leads to the very limited and variable‐ultimate efficacy of foliar zinc fertilizer in woody plants. Our study addressed this problem by comparing the mobility of zinc in apple trees in response to different Zn levels and explored the mechanism underlying the observed high‐efficient phloem remobilization of zinc during the early stages of Zn deficiency. This is the first study revealing that early‐stage zinc deficiency triggers a nicotianamine‐mediated highly efficient phloem transport system that remobilizes zinc to new growth tissues in apple plants. [ABSTRACT FROM AUTHOR]

Citrus bacterial canker (CBC) caused by Xanthomonas citri subsp. citri (Xcc) is a systemic bacterial disease that affects citrus plantations globally. Biotic stress in plants has been linked to a group of important transcription factors known as Basic Leucine Zippers (BZIPs). In this study, CsBZIP40 was functionally characterized by expression analysis, including induction by Xcc and hormones, subcellular localization, over-expression and RNAi silencing. CsBZIP40 belongs to group D of the CsBZIP family of transcription factors and localizes in the nucleus, potentially serving as a transcriptional regulator. In wild type (WT) plants CsBZIP40 can be induced by plant hormones in addition to infection by Xcc which has given insight into its involvement in CBC. In the present study, over-expression of CsBZIP40 conferred resistance to Xcc while its silencing led to Xcc susceptibility. Both over-expression and RNAi affected salicylic acid (SA) production and expression of the genes involved in the SA synthesis and signaling pathway, in addition to interaction of CsBZIP40 with CsNPR1, as detected by a GST pull-down assay. Taken together, the results of this study confirmed the important role of CsBZIP40 in improving resistance to citrus canker through the SA signaling pathway by the presence of NPR1 to activate PR genes. Our findings are of potential value in the breeding of tolerance to CBC in citrus fruits. [ABSTRACT FROM AUTHOR]

Background: Cranberry (Vaccinium macrocarpon L.) fruit quality traits encompass many properties. Although visual appearance and fruit nutritional constitution have usually been the most important attributes, cranberry textural properties such as firmness have recently gained importance in the industry. Fruit firmness has become a quality standard due to the recent demand increase for sweetened and dried cranberries (SDC), which are currently the most profitable cranberry product. Traditionally, this trait has been measured by the cranberry industry using compression tests; however, it is poorly understood how fruit firmness is influenced by other characteristics. Results: In this study, we developed a high-throughput computer-vision method to measure the internal structure of cranberry fruit, which may in turn influence cranberry fruit firmness. We measured the internal structure of 16 cranberry cultivars measured over a 40-day period, representing more than 3000 individual fruit evaluated for 10 different traits. The internal structure data paired with fruit firmness values at each evaluation period allowed us to explore the correlations between firmness and internal morphological characteristics. Conclusions: Our study highlights the potential use of internal structure and firmness data as a decision-making tool for cranberry processing, especially to determine optimal harvest times and ensure high quality fruit. In particular, this study introduces novel methods to define key parameters of cranberry fruit that have not been characterized in cranberry yet. This project will aid in the future evaluation of cranberry cultivars for in SDC production. [ABSTRACT FROM AUTHOR]

The eastern foot of Helan mountain is a famous production area of high-end wine grapes in China. Excessive application of NPK fertilizer induced deficiency in trace elements, such as calcium, and seriously affected the properties of wine grapes. A vineyard in the eastern foot of Helan mountain was selected to investigate the influence of five different concentration treatments of 15 (T1), 30 (T2), 45 (T3), 60 (T4), and 75 (T5) kg·ha-1 of water-soluble calcium fertilizer (Ca(NO3)2·4H2O) application on grape calcium content, yield and fruit properties. The application of calcium fertilizer significantly increased the calcium content in leaves but reduced that in stems and fruits. The highest grape production of 6560.83 kg·ha-1 was achieved at T5 calcium fertilizer application, corresponding to increase of 30.92% than that for the control (CK, normal fertilization) treatment. The minimum titratable acid of 4.63 g·L-1 in grapes was detected at T2 calcium fertilizer application, which was 16.38% lower than CK, however, 13.40% increase in sugar-to-acid ratio was observed at T2. At 45 kg·ha-1 calcium fertilizer concentration, the anthocyanins content was 6.47 mg·L-1, indicating an increase of 53.23% than CK. This study showed that the optimal calcium fertilizer concentration was 30 kg·ha-1 with the lowest °Brix, titratable acidity, anthocyanins, the highest total phenols, reducing sugar, sugar-to-acid ratio, and an acceptable concentration of the soluble sugar and tannins. [ABSTRACT FROM AUTHOR]

The aim of this study is to explore suitable drip irrigation system on the water saving and high yield of pear-jujube from 2009 to 2012 years in the mountain of northern Shaanxi. The treatments consisted of combinations of 5 drip irrigation systems (DP). The irrigation quota of DP-1, DP-2 and DP-3 treatment was 100 m3 hm-2, 135 m3 hm-2 and 180 m3 hm-2, respectively, irrigated 4 times. The irrigation quota of DP-4 and DP-5 treatment was 135 m3 hm-2 and irrigated 3 and 2times, respectively; and with no irrigation as the control (C). Results indicated that bearing branch length of jujube, fruit set and yield of different drip irrigation system are significantly better than C (P<0.05). Bearing branch length and yield of DP-3 treatment are reached maximum in 2012, which are 22.0 cm and 16772.8 m3 hm-2. And they are increased by 47.7% and 13.2% compared with C, respectively. In addition, the water consumption of different irrigation treatment increases along with the increasing of irrigation amount. And the DP-3 treatment is the highest in different years. The water use efficiency of pear-jujube of low irrigation quota is better than the high irrigation quota. Water use efficiency of 135 m3 hm-2 and irrigated 2 times treatment is the best, which is 1.92 m3 hm-2. Considering the lack of high annual precipitation, we conclude that DP-5 treatment was the best drip irrigation system in the mountain of northern Shaanxi. [ABSTRACT FROM AUTHOR]

Biotic stress is one of the key factors that restrict the growth and development of plants. Fruit crops are mostly perennial, so they are more seriously endangered by biotic stress. Plant responses to different types of biotic stresses such as pathogens and insects are controlled by a very complex regulatory and defense system. High-throughput sequencing (next-generation sequencing) has brought powerful research strategies and methods to the research fields of genomics and post-genomics. Functional genomics, transcriptomics, proteomics, metabolomics, and deep-sequencing of small RNAs provides a new path to better understand the complex regulatory and defense systems behind biotic stress in plants. In this review, we summarized recent progresses in research on fruit crops responses to biotic stress using genomics, transcriptomics, proteomics, metabolomics, and deep-sequencing approaches. This paper also summarized the information of SNP marker resources and the transcription factors that are involved in the regulation of biotic stress responses obtained from genome sequencing, and discusses the differential expression of related genes and proteins identified by transcriptome and proteome sequencing. At the same time, the roles of signaling pathways and metabolites involved in plant biotic stress revealed by the metabolome have also been discussed. In addition, the application of small RNA deep sequencing in the study of fruit crop response to biotic stress has also been included in this review. These omics and deep sequencing methods will greatly support the biotic resistance-resistant breeding of fruit crops. [ABSTRACT FROM AUTHOR]

Criniviruses accumulate in the phloem tissue and damage crops by reducing chlorophyll which is essential for plant growth and development. Tomato chlorosis crinivirus (ToCV) is vectored by several whitefly species that damage tomato crops throughout the world. In South Africa, ToCV is a poorly studied pathogen of global economic importance. Therefore, a national survey was initiated to investigate the occurrence and distribution of criniviruses infecting tomato crops in South Africa. Whitefly infested tomato crops exhibiting interveinal leaf chlorosis and chlorotic flecking symptoms were assayed for crinivirus infections using a multiplex reverse transcription polymerase reaction (RT-PCR) approach to assess for the presence of crinivirus species that are known to infect solanaceous hosts. Next-generation sequencing (NGS) was used to generate the complete genome of ToCV from South Africa. Results from the survey indicated that ToCV is presently the only crinivirus species infecting tomatoes in South Africa. Blast analysis showed that the RNA-1 segment of ToCV from South Africa (ToCR1-186) matched 99% to Spanish isolates. On the other hand, the RNA-2 (ToCR2-186) segment matched 98% to a South Korean isolate and three Spanish isolates. Although recombination events were not detected, phylogenetic studies showed inconsistencies in the grouping of RNA-1 and RNA-2 segments for some of the ToCV isolates analyzed in this study. Therefore, we suggest the possibility of intraspecific reassortment. This is the first comprehensive study and full genome sequence of ToCV from South Africa. The information generated from this study is intended to raise awareness of ToCV infections on tomato crops in South Africa. [ABSTRACT FROM AUTHOR]

Herbivorous arthropods cause immense damage in crop production annually. Consumption of these pests by insectivorous animals is of significant importance to counteract their adverse effects. Insectivorous bats are considered amongst the most voracious predators of arthropods, some of which are known crop pests. In vineyard-dominated Mediterranean agroecosystems, several crops are damaged by the attack of insect pests. In this study we aimed 1) to explore the diet and pest consumption of the lesser horseshoe bat Rhinolophus hipposideros and 2) analyse whether the composition of pest species in its diet changes throughout the season. We employed a dual-primer DNA metabarcoding analysis of DNA extracted from faeces collected in three bat colonies of a wine region in Southwestern Europe during the whole active period of most pest species. Overall, 395 arthropod prey species belonging to 11 orders were detected; lepidopterans and dipterans were the most diverse orders in terms of species. Altogether, 55 pest species were identified, 25 of which are known to cause significant agricultural damage and 8 are regarded as pests affecting grapevines. The composition of pest species in faeces changed significantly with the season, thus suggesting several periods should be sampled to assess the pest consumption by bats. As a whole, the results imply that R. hipposideros acts as a suppressor of a wide array of agricultural pests in Mediterranean agroecosystems. Therefore, management measures favouring the growth of R. hipposideros populations should be considered. [ABSTRACT FROM AUTHOR]

Fruits are nowadays considered important suppliers of anti-oxidant molecules. Apples are particularly rich in phenolic compounds, non-nutritional phytochemicals that play active roles in controlling severe chronic diseases. In this work, 19 phenolic compounds were investigated in both skin and pulp tissues of seven apple accessions across the Malus genus collected at two stages: during fruit development and at harvest. The primary difference in phenolic concentration between wild and domesticated accessions, especially in the pulp, could be explained by the larger growth rate of the domesticated varieties. The proposed dilution effect was also confirmed through the observation of the increased content of procyanidin B2+B4 and phloridzin in russet-skinned apples, known to have higher concentrations of these compounds. The metabolite screening was also accompanied by the expression analysis of 16 polyphenolic genes showing, for nine elements, a higher expression at harvest than during fruit development. Finally, a polyphenolic comparison with red-fleshed apples was also carried out, underlying a larger amount of procyanidins and quercetin-3rhamnoside in the white-fleshed accessions. The results presented and discussed in this work suggest that specific white-fleshed apples, especially with russeted-skin, may play an important role in ameliorating the nutraceutical potential of apple fruit. [ABSTRACT FROM AUTHOR]

High-quality genotypic data is a requirement for many genetic analyses. For any crop, errors in genotype calls, phasing of markers, linkage maps, pedigree records, and unnoticed variation in ploidy levels can lead to spurious marker-locus-trait associations and incorrect origin assignment of alleles to individuals. High-throughput genotyping requires automated scoring, as manual inspection of thousands of scored loci is too time-consuming. However, automated SNP scoring can result in errors that should be corrected to ensure recorded genotypic data are accurate and thereby ensure confidence in downstream genetic analyses. To enable quick identification of errors in a large genotypic data set, we have developed a comprehensive workflow. This multiple-step workflow is based on inheritance principles and on removal of markers and individuals that do not follow these principles, as demonstrated here for apple, peach, and sweet cherry. Genotypic data was obtained on pedigreed germplasm using 6-9K SNP arrays for each crop and a subset of well-performing SNPs was created using ASSIsT. Use of correct (and corrected) pedigree records readily identified violations of simple inheritance principles in the genotypic data, streamlined with FlexQTL software. Retained SNPs were grouped into haploblocks to increase the information content of single alleles and reduce computational power needed in downstream genetic analyses. Haploblock borders were defined by recombination locations detected in ancestral generations of cultivars and selections. Another round of inheritance-checking was conducted, for haploblock alleles (i.e., haplotypes). High-quality genotypic data sets were created using this workflow for pedigreed collections representing the U.S. breeding germplasm of apple, peach, and sweet cherry evaluated within the RosBREED project. These data sets contain 3855, 4005, and 1617 SNPs spread over 932, 103, and 196 haploblocks in apple, peach, and sweet cherry, respectively. The highly curated phased SNP and haplotype data sets, as well as the raw iScan data, of germplasm in the apple, peach, and sweet cherry Crop Reference Sets is available through the Genome Database for Rosaceae. [ABSTRACT FROM AUTHOR]

Yeast species that colonize the surface of grape berries at harvest time play an important role during the winemaking process. In this study, the use of culturable microbial techniques permitted a quantitative and qualitative inventory of the different yeast species present on the grape berry surfaces of Montepulciano and Verdicchio varieties when treated with conventional and organic fungicides. The results show that the most widespread yeast species at harvest time were Aureobasidium pullulans and Hanseniaspora uvarum, which are considered normal resident species and independent of the grape varieties and treatments applied. Specific differences when comparing the grape varieties were observed in species and were detected at a lower frequency; Pichia spp. were prevalent in Verdicchio, whereas Lachancea thermotolerans and Zygoascus meyerae were found in Montepulciano. In both vineyards, the farming treatments improved the competitiveness of A. pullulans, which was probably due to its reduced susceptibility to treatments that improved the competition toward other fungi. In contrast, the fermenting yeast H. uvarum was negatively affected by fungicide treatments and showed a reduced presence if compared with untreated grapes. Organic treatments directly impacted the occurrence of Issachenkia terricola in Montepulciano grapes and Debaryomyces hansenii and Pichia membranifaciens in Verdicchio. Conversely, a negative effect of organic treatments was found toward Metschnikowia pulcherrima and Starmerella bacillaris. Overall, the data suggest that the yeast community colonizing the grape berry surface was influenced by both grape variety and farming treatments, which characterized the yeast biota of spontaneous must fermentation. [ABSTRACT FROM AUTHOR]

Reliability and economic assessment of the Multiplex® optical sensor employed for non-destructive grape parameters estimates was evaluated in 2017 against a wet chemistry approach in mature vineyards including five cultivars (two whites, two red and one pink colored) assuring a broad range of variation in both technological and phenolic maturity parameters. Among the five Multiplex (Mx) indices evaluated (SFR_R, FLAV, FLAV-UV, ANTH_RG and FERARI) in all cultivars with the exception of Barbera SFR_R showed a significant and linear correlation with total soluble solids (TSS) for TSS ≥ 10 °Brix. Conversely, no significant correlation was found between FLAV and total flavonols concentration, whereas a significant linear correlation was found in Barbera (R2 = 0.66) and Ervi (R2 = 0.63) when the FLAV index was replaced with the FLAV_UV index. Within each cultivar, both ANTH_RG and FERARI showed close correlations with total anthocyanins concentration determined by wet chemistry although under different model shapes. Expressing berry color accumulation on a per skin mass basis rather than for whole berry mass basis, allowed for better separation of behavior of single cultivars and improved accuracy of model fitting for the combination of Barbera and ANTH_RG. A strict linear correlation was always found, within each index, for Mx readings taken on the two opposite sides of the same cluster, implying no significant within-cluster differences in sugar, color and flavonol concentrations. Economic assessment of Mx by means of the Net Present Value (NPV) approach showed that Mx is economically viable for a two hectare vineyard cultivating three red grape varieties (90 samples per year) if its lifetime is at least 7 years. Conversely, if only two red varieties are grown Mx should be used at least 11 years to make it economic suitable. Bigger properties growing a higher number of red varieties are the more interested in Mx as the expected NPV assumes positive values with a Mx usage of minimum 3 years. [ABSTRACT FROM AUTHOR]

Tomato (Solanum lycopersicum) is one of the highest-value vegetable crops worldwide. Understanding the genetic regulation of primary metabolite levels can inform efforts aimed toward improving the nutrition of commercial tomato cultivars, while maintaining key traits such as yield and stress tolerance. We identified 388 suggestive association loci (including 126 significant loci) for 92 metabolic traits including nutrition and flavor-related loci by genome-wide association study from 302 accessions in two different environments. Among them, an ascorbate quantitative trait locus TFA9 (OMATO RUIT SCORBATEON CHROMOSOME ) co-localized with SlbHLH59, which promotes high ascorbate accumulation by directly binding to the promoter of structural genes involved in the D-mannose/L-galactose pathway. The causal mutation of TFA9 is an 8-bp InDel, named InDel_8, located in the promoter region of SlbHLH59 and spanned a 5’UTR Py-rich stretch motif affecting its expression. Phylogenetic analysis revealed that differentially expressed SlbHLH59 alleles were selected during tomato domestication. Our results provide a dramatic illustration of how ascorbate biosynthesis can be regulated and was selected during the domestication of tomato. Furthermore, the findings provide novel genetic insights into natural variation of metabolites in tomato fruit, and will promote efficient utilization of metabolite traits in tomato improvement. [ABSTRACT FROM AUTHOR]

Cucumber mosaic virus (CMV) has an extensive host range, however there are few reports of CMV infecting fruit crops in China. In this study, CMV was detected using RT-PCR and Western blot from six kinds of fruit crops including pear in Heilongjiang province, apricot, grape, peach, Castanea mollissima and Malus spectabilis in Shandong province in China. This is the first report of CMV naturally infecting these six fruit crops in China. In addition, this is also the first report of CMV in Heilongjiang province which is the northest province of China. [ABSTRACT FROM AUTHOR]

Blueberry is a kind of new rising popular perennial fruit with high healthful quality. It is of utmost importance to develop new blueberry varieties for different climatic zones to satisfy the demand of people in the world. Molecular marker assisted breeding is believed to be an ideal method for the development of new blueberry varieties for its shorter breeding cycle than the conventional breeding. Simple sequence repeats (SSRs) and single nucleotide polymorphisms (SNPs) markers are widely used molecular tools for marker assisted breeding, which could be detected at large scale by the transcriptome sequencing. Here, we sequenced the leaves transcriptome of 19 rabbiteye (Vaccinium ashei Reade), 13 southern highbush (Vaccinium. corymbosum L × native southern Vaccinium Spp) and 22 cultivars of northern highbush blueberry (Vaccinium corymbosum L) by using next generation sequencing technologies. A total of 80.825 Gb clean data with an average of about 12.525 million reads per cultivar were obtained. We assembled 58,968, 55,973 and 53,887 unigenes by using the clean data from rabbiteye, southern highbush and northern highbush blueberry cultivars, respectively. Among these unigenes, 3599, 3495 and 3513 unigenes were detected as candidate resistance genes in three blueberry crops. Moreover, we identified more than 8756, 9020, and 9198 SSR markers from these unigenes, and 7665, 4861, 13,063 SNPs from the annotated single copy unigenes, respectively. The results will be helpful for the molecular genetics and association analysis of blueberry and the basic molecular information of pest and disease resistance of blueberry, and would also offer huge number of molecular tools for the marker assisted breeding to produce blueberry cultivars with different adaptive characteristics. [ABSTRACT FROM AUTHOR]

The objective of this study was to determine the residual characteristics and to calculate the persistence of the fungicides fluxapyroxad (15.3% suspension concentrate) and penthiopyrad (20% emulsifiable concentrate) on the leaves of greenhouse-cultivated perilla (Perilla frutescens var. japonica Hara). Fluxapyroxad was diluted 2,000-fold and penthiopyrad was diluted 4,000-fold. Each solution was sprayed 3 times onto crops at 7-d intervals before harvest. Leaf samples were collected at 3 h (0 d), 1, 3, 5 and 7 d after the third and final treatment. The recovery ranges of fluxapyroxad and penthiopyrad and their metabolites were 74.2%–104.1%. Pesticide residue analyses indicated that fluxapyroxad and penthiopyrad residues in perilla leaves dissipated over time. The persistence of fluxapyroxad and penthiopyrad residues 7 d after the final spray were 50.0% ± 4.9% and 44.2% ± 2.8% of those measured 3 h (0 d) after the final spray, respectively. The percent acceptable daily intake (%ADI)—which was assessed according to the daily food intake by Koreans according to age—was < 7.3%. Therefore, it was determined that the health risk was low. The perception that residual pesticides are present in large amounts in perilla leaf has led to consumer concern. However, in this study, the amounts of pesticide in perilla leaf decreased over time. Although it has been hypothesized that the risk of pesticide intake would be higher in younger children, the results actually suggest the opposite. Therefore, the pesticides in question are considered to be safe for use on perilla leaves. [ABSTRACT FROM AUTHOR]

Horticulturalists and gardeners in temperate regions often claim that planting marigolds next to tomato plants protects the tomatoes from the glasshouse whitefly (Trialeurodes vaporariorum Westwood). If shown to hold true, this technique could be used in larger-scale tomato production, protecting the crop and helping to introduce greater plant diversity into these agro-ecosystems. Here we present two large-scale glasshouse trials corresponding to the two main ways growers are likely to use marigolds to control whiteflies. In the first, marigolds are grown next to tomato throughout the growing period and we quantify whitefly population growth from the seedling stage over a 48 day infestation period. Here we show that association with marigolds significantly slows whitefly population development. Introducing additional whitefly-attractive ‘pull’ plants around the perimeter of plots has little effect, but reducing the proportion of marigolds and introducing other non-hosts of whiteflies (basil, nasturtium and Chinese cabbage) also reduces whitefly populations on tomato. The second experiment assesses the efficacy of marigolds when used as an ‘emergency’ measure. Here we allow whitefly populations to build to a high density on unprotected tomatoes then introduce marigolds and assess whitefly population over a further period. Following laboratory work showing limonene to be a major chemical component of French marigolds and a negative behaviour response of whiteflies to this compound, limonene dispensers are added as an additional treatment to this experiment. “Emergency” marigold companion planting yielded minimal reductions in whitefly performance, but the use of limonene dispensers was more effective. Our work indicates that companion planting short vine tomatoes with French marigolds throughout the growing season will slow development of whitefly populations. Introducing marigolds to unprotected tomatoes after significant whitefly build-up will be less effective. The use of limonene dispensers placed near to tomato plants also shows promise. It is argued that this work supports the possibility of the development of a mixture of tomato companion plants that infer ‘associational resistance’ against many major invertebrate pests of tomato. Such a mixture, if comprising edible or ornamental plants, would be economically viable, would reduce the need for additional chemical and biological control, and, if used outdoors, would generate plant-diverse agro-ecosystems that are better able to harbour invertebrate wildlife. [ABSTRACT FROM AUTHOR]

To fully utilize the characteristic climatic conditions in the southern region of China, a two-crop-a-year cultivation system technique for ‘Kyoho’ grape was developed during the past decade. After summer harvest in June, appropriate pruning and chemical treatments promote flowering and fruiting, which enables a second harvest in late December. Due to climatic differences between the two crop growing seasons, grape phenol and carotenoid metabolism differ greatly. The reported study analyzed the transcriptome of the carotenoid and phenylpropanoid/flavonoid pathways in grapes at four different stages during the two growing seasons. Compared with those in summer grapes, expression levels of the majority of genes involved in the carotenoid metabolic pathway in winter grapes were generally upregulated. This result was associated with lower rainfall and much more abundant sunlight during the second growing season. On the other hand, summer cropping strongly triggered the expression of upstream genes in the phenylpropanoid/flavonoid pathway at E-L 33 and E-L 35. Transcript levels of flavonoid 3’,5’-hydroxylase (F3’5’H), flavonoid 3’-hydroxylase (F3’H), flavonoid 3-hydroxylase (F3H) and glutathione S-transferase (GST) were upregulated in winter grapes at the mature stage. Together, these results might indicate that more flavonoids would be synthesized in ripe winter grapes during the mature stage of the second crop under much drier conditions, longer sunlight hours and lower temperature. These data provide a theoretical foundation for the secondary metabolism of berries grown under two-crop-a-year cultivation systems. [ABSTRACT FROM AUTHOR]

To target food security interventions for smallholder households, decision makers need large-scale information, such as maps on poverty, food security and key livelihood activities. Such information is often based on expert knowledge or aggregated data, despite the fact that food security and poverty are driven largely by processes at the household level. At present, it is unclear if and how household level information can contribute to the spatial prediction of such welfare indicators or to what extent local variability is ignored by current mapping efforts. A combination of geo-referenced household level information with spatially continuous information is an underused approach to quantify local and large-scale variation, while it can provide a direct estimate of the variability of welfare indicators at the most relevant scale. We applied a stepwise regression kriging procedure to translate point information to spatially explicit patterns and create country-wide predictions with associated uncertainty estimates for indicators on food availability and related livelihood activities using household survey data from Uganda. With few exceptions, predictions of the indicators were weak, highlighting the difficulty in capturing variability at larger scale. Household explanatory variables identified little additional variation compared to environmental explanatory variables alone. Spatial predictability was strongest for indicators whose distribution was determined by environmental gradients. In contrast, indicators of crops that were more ubiquitously present across agroecological zones showed large local variation, which often overruled large-scale patterns. Our procedure adds to existing approaches that often only show large-scale patterns by revealing that local variation in welfare is large. Interventions that aim to target the poor must recognise that diversity in livelihood activities for income generation within any given area often overrides the variability of livelihood activities between distant regions in the country. [ABSTRACT FROM AUTHOR]

This study reports the construction of high density linkage maps of Japanese plum (Prunus salicina Lindl.) using single nucleotide polymorphism markers (SNPs), obtained with a GBS strategy. The mapping population (An x Au) was obtained by crossing cv. “Angeleno” (An) as maternal line and cv. “Aurora” (Au) as the pollen donor. A total of 49,826 SNPs were identified using the peach genome V2.1 as a reference. Then a stringent filtering was carried out, which revealed 1,441 high quality SNPs in 137 An x Au offspring, which were mapped in eight linkage groups. Finally, the consensus map was built using 732 SNPs which spanned 617 cM with an average of 0.96 cM between adjacent markers. The majority of the SNPs were distributed in the intragenic region in all the linkage groups. Considering all linkage groups together, 85.6% of the SNPs were located in intragenic regions and only 14.4% were located in intergenic regions. The genetic linkage analysis was able to co-localize two to three SNPs over 37 putative orthologous genes in eight linkage groups in the Japanese plum map. These results indicate a high level of synteny and collinearity between Japanese plum and peach genomes. [ABSTRACT FROM AUTHOR]

Blueberry is a small fruit crop which includes a complex group of different Vaccinium species of various ploidy levels. Commercial blueberries have been grown in Europe most recently, so there is not much information available about their adaptation into new regions. In this work we investigated adaptation to the environmental conditions of northern Spain, in terms of flowering and ripening seasons, of a set of 70 blueberry cultivars including several of the most important cultivated American species (V. corymbosum, V. virgatum, V. macrocarpon and V. uliginosum) in order to identify which types are best-suited in this geographical area of Europe. Most materials showed high chilling requirements for flowering under local conditions, while materials with low-chilling requirements showed problems in the maturation process of the flowers. Most cultivars were early or mid-season while a relative lack of late-season cultivars was observed. GBS was used for the analysis of genetic diversity in this sample of 70 cultivars. A total of 5255 SNP markers were obtained and a cluster analysis revealed three main groups associated with the ploidy level of the species. A Principal Component Analysis revealed a grouping of the V. corymbosum cultivars according to their chilling requirements. A total of 29 SNPs were identified as being highly informative for diversity analysis and potentially useful for cultivar identification and for breeding purposes. The results obtained from this research should contribute to the expansion of this crop, as well as providing data about genetic diversity useful for the preservation of genetic resources or for future breeding programs. [ABSTRACT FROM AUTHOR]

Shelf life is the time a product can be stored without losing its qualitative characteristics. It represents one of the most critical quality traits for food products, particularly for fleshy fruits, including tomatoes. Tomatoes’ shelf life is usually shortened due to fast over-ripening caused by several different factors, among which changes in temperature, respiration and pathogen exposure. Although tomatoes usually do not contain anthocyanins, varieties enriched in these antioxidant compounds have been recently developed. The anthocyanin-rich tomatoes have been shown to possess a significantly extended shelf life by delayed over-ripening and reduction of the susceptibility to certain pathogens. In the present work, we compared different conditions of postharvest storage of anthocyanin-rich tomato fruits with the aim to understand if the added value represented by the presence of the anthocyanins in the fruit peel can be affected in postharvest. For this purpose we used an anthocyanin-enriched tomato line derived from conventional breeding and took into consideration different light and temperature conditions, known to affect fruit physiology during postharvest as well as anthocyanin production. Several quality traits related to the fruit ripening were measured, including anthocyanin and carotenoid content, pH, titratable acidity and total soluble solids. In this way we identified that the most suitable fruit storage and postharvest anthocyanin accumulation were obtained through exposure to cool temperature (12° C), particularly in the presence of light. Under these parameters, tomato fruits showed increased anthocyanin content and unchanged flavour-related features up to three weeks after harvesting. [ABSTRACT FROM AUTHOR]

The reduction of chemical fungicides in agriculture has led to the use of microorganisms as biocontrol agents. Starmerella bacillaris is a non-Saccharomyces yeast associated with overripe and botrytized grape berries microbiota. Its use has been proposed for wine fermentation because of yeast fructophilic character and high glycerol production. Recently, S. bacillaris has been demonstrated to possess antifungal activity against Botrytis cinerea on the grape. Penicillium expansum is the pathogen responsible for the blue mold rot, the most important postharvest disease of apples. These fruits are the raw material of the cider, an alcoholic beverage commonly produced using S. cerevisiae starter cultures. In this study 14 S. bacillaris strains have been studied to evaluate their postharvest antifungal activity against P. expansum on apples. Moreover, the fermentation performances in apple juice of these non-Saccharomyces strains were tested, both in single-strain fermentation and in sequential fermentation, together with S. cerevisiae. Four S. bacillaris strains, able to significantly decrease blue mold rot symptoms and to increase glycerol content during fermentation have been selected to improve apple and cider quality. [ABSTRACT FROM AUTHOR]

This study was conducted during the 2014 and 2015 vintages on Vitis vinifera L. cv. Merlot and Cabernet Gernischt to investigate whether natural variation in berry size could affect grape aromatic compounds. Grape berries were separated into three size categories based on their diameter: small, middle and large. The results showed that berry size exerted a significant influence on the volatile profiles of both winegrape varieties. Hierarchical clustering analysis demonstrated that the volatile profiles of middle berries were different from those of large and small berries. Middle berries had the greatest abundance of aroma compounds, followed by small and large berries. Especially, C6/C9 compounds, norisoprenoids, terpenoids showed markedly different concentrations among differently sized Merlot berries and C6/C9 compounds, terpenoids among differently sized Cabernet Gernischt berries. Middle berries of both grape varieties may possess the greatest intensity of fresh-green, fruity and floral aromas due to the high odour activity values (OAVs) of decanal, hexanal, (E)-2-hexenal, (E)-β-damascenone and β-ionone in middle sizes of Merlot berries and the high OAVs of (E)-2-hexenal and (E)-β-damascenone in middle sizes of Cabernet Gernischt berries. This knowledge could be important for winemakers to conduct targeted berry sorting, thereby improving the aromatic quality of grapes. [ABSTRACT FROM AUTHOR]

In the breeding of citrus (Citrus spp.), suitable fruit quality is essential for consumer acceptance of new cultivars. To identify parental combinations producing F1 progeny with fruit-quality traits exceeding certain selection criteria, we developed a simple and practical method for predicting multiple-trait segregation in an F1 progeny population. This method uses breeding values of parental genotypes and an additive genetic (co)variance matrix calculated by the best linear unbiased prediction method to construct a model for trait segregation in F1 progeny. To confirm the validity of our proposed method, we calculated the breeding values and additive genetic (co)variances based on phenotypic records on nine fruit-quality traits in 2122 genotypes, and constructed a trait segregation model. Subsequently, we applied the trait segregation model to all pairs of the 2122 genotypes (i.e., 2,252,503 combinations), and predicted the most promising combinations and evaluated their probabilities of producing superior genotypes exceeding the nine fruit-quality traits of satsuma mandarin (Citrus unshiu Marcow.) or ‘Shiranuhi’ (‘Kiyomi’ × ‘Nakano No. 3’ ponkan), two popular citrus cultivars in Japan. We consider these results to be useful not only for selecting good parental combinations for fruit quality or other important traits but also for determining the scale of breeding programs required to achieve specific breeding goals. [ABSTRACT FROM AUTHOR]

The Asian citrus psyllid (ACP), Diaphorina citri, is a major vector of the bacteria Candidatus Liberibacter asiaticus and C.L. americanus, which cause Huanglongbing disease (HLB) (aka Citrus greening disease), considered the most serious bacterial disease of citrus trees. As part of a multidisciplinary project on psyllid biology (), the results presented here concern a detailed anatomical study of the male reproductive system (testes, seminal vesicles, accessory glands, sperm pump, connecting ducts, and aedeagus) using micro-computed tomography (micro-CT). The study summarizes current knowledge on psyllids male reproductive system and represents significant advances in the knowledge of ACP anatomy. [ABSTRACT FROM AUTHOR]

The abundance of banana flower thrips (Thrips hawaiiensis Morgan) in a banana (Musa acuminata Colla “Williams” cultivar) plantation was investigated using yellow sticky traps (29.70 cm × 21.00 cm) in 2015. Banana flower thrips occurred throughout the year with monthly variation, and the maximum occurrence was observed in October and November during the bud burst (73.80 ± 6.32 adults/trap) and young fruit (70.06 ± 5.69 adults/trap) periods. The damage rates were as follows: interior flowers >3rd-layer flowers > 2nd-layer flowers > 1st-layer flowers > young fruits. This result indicates that thrips migrated to lower bracts, young fruits, and other flower buds as bracts gradually opened. Results also showed that the reducing sugar, vitamin C, protein and ash contents in thrips-damaged flowers were all significantly lower than those in undamaged flowers, while there was no significant difference between damaged and undamaged young banana fruit. Our results indicated that the abundances of banana flower thrips were closely associated with the growing stage of banana. Thrips mainly infested flower buds and caused a reduction in nutrients for the host plant, especially the reducing sugar and vitamin C contents, which reduced the nutritional quality of banana fruits and the quality of flower bud by-products of banana. [ABSTRACT FROM AUTHOR]

Spring frosts, as experienced in Europe in April 2016 and 2017, pose a considerable risk to agricultural production, with the potential to cause significant damages to agricultural yields. Meteorological blocking events (stable high-pressure systems) have been shown to be one of the factors that trigger cold spells in spring. While current knowledge does not allow for drawing conclusions as to any change in future frequency and duration of blocking episodes due to climate change, the combination of their stable occurrence with the biological system under a warming trend can lead to economic damage increases. To evaluate future frost risk for apple producers in south-eastern Styria, we combine a phenological sequential model with highly resolved climate projections for Austria. Our model projects a mean advance of blooming of –1.6 ± 0.9 days per decade, shifting the bloom onset towards early April by the end of the 21st century. Our findings indicate that overall frost risk for apple cultures will remain in a warmer climate and potentially even increase due to a stronger connection between blocking and cold spells in early spring that can be identified from observational data. To prospectively deal with frost risk, measures are needed that either stabilize crop yields or ensure farmers’ income by other means. We identify appropriate adaptation measures and relate their costs to the potential frost risk increase. Even if applied successfully, the costs of these measures in combination with future residual damages represent additional climate change related costs. [ABSTRACT FROM AUTHOR]

The whitefly, Bemisia tabaci, is a major threat to tomato Solanum lycopersicum and ranks as one of the world’s 100 most invasive pests. This is the first study of B. tabaci (Biotype B and Q) global distribution, focusing on risk levels of this invasive pest, in areas projected to be suitable for open field S. lycopersicum cultivation under climate change. This study aims to identify levels of risk of invasive B. tabaci for areas of suitability for open field S. lycopersicum cultivation for the present, 2050 and 2070 using MaxEnt and the Global Climate Model, HadGEM2_ES under RCP45. Our results show that 5% of areas optimal for open field S. lycopersicum cultivation are currently at high risk of B. tabaci. Among the optimal areas for S. lycopersicum, the projections for 2050 compared to the current time showed an extension of 180% in areas under high risk, and a shortening of 67 and 27% in areas under medium and low risk of B. tabaci, respectively, while projections for 2070 showed an extension of 164, and a shortening of 49 and 64% under high, medium and low risk, respectively. The basis of these projections is that predicted temperature increases could affect the pest, which has great adaptability to different climate conditions, but could also impose limitations on the growth of S. lycopersicum. These results may be used in designing strategies to prevent the introduction and establishment of B. tabaci for open-field tomato crops, and assist the implementation of pest management programs. [ABSTRACT FROM AUTHOR]

The pear (genus Pyrus) is one of the most ancient and widely cultivated tree fruit crops in temperate climates. The Mount Etna area claims a large number of pear varieties differentiated due to a long history of cultivation and environmental variability, making this area particularly suitable for genetic studies. Ninety-five pear individuals were genotyped using the simple sequence repeat (SSR) methodology interrogating both the nuclear (nDNA) and chloroplast DNA (cpDNA) to combine an investigation of maternal inheritance of chloroplast SSRs (cpSSRs) with the high informativity of nuclear SSRs (nSSRs). The germplasm was selected ad hoc to include wild genotypes, local varieties, and national and international cultivated varieties. The objectives of this study were as follows: (i) estimate the level of differentiation within local varieties; (ii) elucidate the phylogenetic relationships between the cultivated genotypes and wild accessions; and (iii) estimate the potential genetic flow and the relationship among the germplasms in our analysis. Eight nSSRs detected a total of 136 alleles with an average minor allelic frequency and observed heterozygosity of 0.29 and 0.65, respectively, whereas cpSSRs allowed identification of eight haplotypes (). These results shed light on the genetic relatedness between Italian varieties and wild genotypes. Among the wild species, compared with P. amygdaliformis, few P. pyraster genotypes exhibited higher genetic similarity to local pear varieties. Our analysis revealed the presence of genetic stratification with a ‘wild’ subpopulation characterizing the genetic makeup of wild species and the international cultivated varieties exhibiting the predominance of the ‘cultivated’ subpopulation. [ABSTRACT FROM AUTHOR]

In tomato, resistance to Tomato spotted wilt virus (TSWV) is conferred by the dominant gene, designated Sw-5. Virulent Sw-5 resistance breaking (SRB) mutants of TSWV have been reported on Sw-5 tomato cultivars. Two different PCR-based allelic discrimination techniques, namely Custom TaqMan™ SNP Genotyping and high-resolution melting (HRM) assays, were developed and compared for their ability to distinguish between avirulent (Sw-5 non-infecting, SNI) and SRB biotypes. TaqMan assays proved to be more sensitive (threshold of detection in a range of 50–70 TSWV RNA copies) and more reliable than HRM, assigning 25 TSWV isolates to their correct genotype with an accuracy of 100%. Moreover, the TaqMan SNP assays were further improved developing a rapid and simple protocol that included crude leaf extraction for RNA template preparations. On the other hand, HRM assays showed higher levels of sensitivity than TaqMan when used to co-detect both biotypes in different artificial mixtures. These diagnostic assays contributed to gain preliminary information on the epidemiology of TSWV isolates in open field conditions. In fact, the presented data suggest that SRB isolates are present as stable populations established year round, persisting on both winter (globe artichoke) and summer (tomato) crops, in the same cultivated areas of Southern Italy. [ABSTRACT FROM AUTHOR]

Tomato yellow leaf curl virus (TYLCV) causes great losses in tomato production. In addition to tomato, TYLCV infects many crops or weeds as alternative hosts. These alternative hosts may serve as reservoirs for TYLCV survival and spread. Here, we tested the capability of cultivated, flue-cured tobacco to act as a reservoir host plant for TYLCV. TYLCV DNA was detected in nine flue-cured tobacco cultivars inoculated with an infectious TYLCV clone, although no visible symptoms developed on TYLCV-infected tobacco plants. The percentage of whiteflies with viral DNA increased with an increasing acquisition access period (AAP) and reached 100% after a 12 h AAP on infected tobacco plants. Using infected tobacco plants as virus resources, TYLCV was capable of being transmitted to tobacco and tomato plants by whiteflies, and typical symptoms of TYLCV infection were observed on infected tomato plants but not on infected tobacco plants. Our results suggest that flue-cured tobacco can serve as a reservoir host plant for TYLCV and may play an important role in the spread of TYLCV epidemics in China. [ABSTRACT FROM AUTHOR]

Citrus Huanglongbing (HLB), a highly devastating citrus disease, is associated with ‘Candidatus Liberibacter asiacitus’ (CLas), a member of phloem-inhabiting α-proteobacteria. HLB can affect all cultivated citrus and no cure is currently available. Previous studies showed that Kaffir lime (Citrus hystrix), primarily grown in South Asia and Southeast Asia, was tolerant to HLB but the molecular mechanism remains unknown. In this study, gene expression profiling experiments were performed on HLB-tolerant C. hystrix and HLB-susceptible C. sinensis three months after inoculation with CLas using RNA-seq data. Differentially expressed genes (DEGs) in the two citrus cultivars were mainly involved in diverse cellular functions including carbohydrate metabolism, photosynthesis, cell wall metabolism, secondary metabolism, hormone metabolism and oxidation/reduction processes. Notably, starch synthesis and photosynthesis process were not disturbed in CLas-infected C. hystrix. Most of the DEGs involved in cell wall metabolism and secondary metabolism were up-regulated in C. hystrix. In addition, the activation of peroxidases, Cu/Zn-SOD and POD4, may also enhance the tolerance of C. hystrix to CLas. This study provides an insight into the host response of HLB-tolerant citrus cultivar to CLas. C. hystrix is potentially useful for HLB-tolerant/resistant citrus breeding in the future. [ABSTRACT FROM AUTHOR]

Nesidiocoris tenuis (Reuter) (Hemiptera: Miridae) is an effective predator of multiple pests of vegetable crops, such as thrips, mites, aphids, whiteflies, leafminers. It is mass-reared and released for augmentative biocontrol programs mainly aimed at controlling whiteflies and Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae) in greenhouses and open field. We evaluated the lethal and sublethal toxicity upon N. tenuis adults of label doses of three insecticides (pyriproxyfen, spirotetramat, cypermethrin) and seven fungicides (benomyl, chlorothalonil, copper oxychloride, cyazofamid, fluopicolide + propamocarb hydrochloride (FPH), penconazol, trifloxystrobin) commonly used in various crops. Two exposure routes were tested: (i) contact with dry residues of insecticides or fungicides on tomato sprouts and (ii) multiple exposure to these chemicals via topical sprays on adults which foraged on treated sprouts; and fed on treated eggs of Ephestia kuehniella (Zeller) (Lepidoptera: Pyralidae) simultaneously. Mortality and reproductive capacity were investigated as indicators of lethal and sublethal effects on N. tenius. The tested insecticides and fungicides were all classified as harmless when predator was exposed only to the dry residues of each. However, the multiple exposure to either cypermethrin, benomyl, chlorothalonil, copper oxychloride or trifloxystrobin caused significant mortality of N. tenuis adults. Cypermethrin also significantly reduced its reproductive capacity. Interestingly, N. tenuis produced a higher number of progeny when exposed to fungicides penconazol and FPH in both exposure scenarios. Overall, findings suggest that the two insecticides, pyriproxyfen and spirotetramat but not cypermethrin, and all tested fungicides can be considered compatible with N. tenuis. [ABSTRACT FROM AUTHOR]

The mandarin horticultural group is an important component of world citrus production for the fresh fruit market. This group formerly classified as C. reticulata is highly polymorphic and recent molecular studies have suggested that numerous cultivated mandarins were introgressed by C. maxima (the pummelos). C. maxima and C. reticulata are also the ancestors of sweet and sour oranges, grapefruit, and therefore of all the “small citrus” modern varieties (mandarins, tangors, tangelos) derived from sexual hybridization between these horticultural groups. Recently, NGS technologies have greatly modified how plant evolution and genomic structure are analyzed, moving from phylogenetics to phylogenomics. The objective of this work was to develop a workflow for phylogenomic inference from Genotyping By Sequencing (GBS) data and to analyze the interspecific admixture along the nine citrus chromosomes for horticultural groups and recent varieties resulting from the combination of the C. reticulata and C. maxima gene pools. A GBS library was established from 55 citrus varieties, using the ApekI restriction enzyme and selective PCR to improve the read depth. Diagnostic polymorphisms (DPs) of C. reticulata/C. maxima differentiation were identified and used to decipher the phylogenomic structure of the 55 varieties. The GBS approach was powerful and revealed 30,289 SNPs and 8,794 Indels with 12.6% of missing data. 11,133 DPs were selected covering the nine chromosomes with a higher density in genic regions. GBS combined with the detection of DPs was powerful for deciphering the “phylogenomic karyotypes” of cultivars derived from admixture of the two ancestral species after a limited number of interspecific recombinations. All the mandarins, mandarin hybrids, tangelos and tangors analyzed displayed introgression of C. maxima in different parts of the genome. C. reticulata/C. maxima admixture should be a major component of the high phenotypic variability of this germplasm opening up the way for association studies based on phylogenomics. [ABSTRACT FROM AUTHOR]