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By studying transport through seven structurally related porphyrin derivatives with a machine learning algorithm we could identify and distinguish three different electronic paths., Porphyrin derivatives are key components in natural machinery enabling us to store sunlight as chemical energy. In spite of their prominent role in cascades separating electrical charges and their potential as sensitizers in molecular devices, reports concerning their electronic transport characteristics are inconsistent. Here we report a systematic investigation of electronic transport paths through single porphyrin junctions. The transport through seven structurally related porphyrin derivatives was repeatedly measured in an automatized mechanically controlled break-junction set-up and the recorded data were analyzed by an unsupervised clustering algorithm. The correlation between the appearances of similar clusters in particular sub-sets of the porphyrins with a common structural motif allowed us to assign the corresponding current path. The small series of model porphyrins allowed us to identify and distinguish three different electronic paths covering more than four orders of magnitude in conductance.

We present experimental and theoretical studies of single-molecule conductance through nonplanar fullerocurcuminoid molecular dyads in ambient conditions using the mechanically controllable break junction technique. We show that molecular dyads with bare fullerenes form configurations with conductance features related to different transport channels within the molecules, as identified with filtering and clustering methods. The primary channel corresponds to charge transport through the methylthio-terminated backbone. Additional low-conductance channels involve one backbone side and the fullerene. In fullerenes with four additional equatorial diethyl malonate groups attached to them, the latter transport pathway is blocked. Density functional theory calculations corroborate the experimental observations. In combination with nonequilibrium green functions, the conductance values of the fullerocurcuminoid backbones are found to be similar to those of a planar curcuminoid molecule without a fullerene attached. In the nonplanar fullerocurcuminoid systems, the highest-conductance peak occurs partly through space, compensating for the charge delocalization loss present in the curcuminoid system., Financial support from the European Commission (COST Action MOLSPIN CA15128 and EU RISE (DAFNEOX) project SEP-210165479) is gratefully acknowledged. The work at the University of Chile was supported by Fondecyt Regular Project 1181080 (D.D.), Fondecyt Regular Project 1161775 (M.S.), Fondecyt Regular Project 1170524 (D.A.), and Fondequip EQM140055 and EQM180009 (D.D). Powered@NLHPC: this research was partially supported by the supercomputing infrastructure of the NLHPC (ECM-02). E.R. acknowledges MICIIN for grant PGC2018-093863-B-C21 and the Maria de Maeztu Excellence grant MDM-2017-0767, for the computer resources, technical expertise, and assistance provided by the Barcelona Supercomputing Centre and CSUC and to the Generalitat de Catalunya for an ICREA Academia award and grant 2017SGR1289. H.S.J.v.d.Z. acknowledges support from the Dutch Science foundation (NWO). N.A.-A. thanks MEC for grant MAT2016-77852-C2-1-R, to the Generalitat de Catalunya for the grant 2017SGR1277, and the Severo Ochoa Program for Centers of Excellence in R&D (SEV-2015-0496). This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement 724981). L.E. thanks the US National Science Foundation (NSF) for generous support of this work under the CHE-1801317 program. The Robert A. Welch Foundation is also gratefully acknowledged for an endowed chair to L.E. (grant AH-0033).

The bowl-shaped, 3-fold interlinked porphyrin dimer 2 was obtained in respectable yields during macrocyclization attempts. Its bicyclic structure, consisting of a macrocycle made of a pair of acetylene interlinked tetraphenylporphyrins which are additionally linked by a C-C bond interlinking two pyrrole subunits, has been confirmed spectroscopically (2D-NMR, UV/vis, HR-MALDI-ToF MS). Late-stage functionalization provided the structural analogue 1 with acetyl-protected terminal thiol anchor groups enabling single molecule transport investigations in a mechanically controlled break junction experiment. The formation of single-molecule junctions was observed, displaying large variations in the observed conductance values pointing at a rich diversity in the molecular junctions.

A conformationally flexible calix[4]pyrrole possessing a conjugated electronic structure (an N‐substituted oxoporphyrinogen (OxP) related to porphyrin) was used to investigate the influence of mechanical stretching on the single‐molecule conductance of these molecules using the mechanically‐controlled break junction (MCBJ) technique. The results show that the molecule can be immobilized in a single‐molecule break junction configuration, giving rise to different behaviours. These include step‐like features in the conductance vs. displacement traces as well as conductance traces that exhibit a slower decay (‘downhill’ traces) than measured for direct tunneling. The latter class of traces can be associated with the mechanical manipulation (i. e., stretching) of the molecule with inter‐electrode distances as long as 2 nm. Density functional theory (DFT) calculations reveal that OxP molecules are stable under stretching in the length regime studied.

Switching of conductance between conformers can be explained by the rotation of one methyl group., We have studied the single-molecule conductance of a family of curcuminoid molecules (CCMs) using the mechanically controlled break junction (MCBJ) technique. The CCMs under study contain methylthio (MeS–) as anchoring groups: MeS-CCM (1), the free-ligand organic molecule, and two coordination compounds, MeS-CCM-BF2 (2) and MeS-CCM-Cu (3), where ligand 1 coordinates to a boron center (BF2 group) and to a CuII moiety, respectively. We found that the three molecules present stable molecular junctions allowing detailed statistical analysis of their electronic properties. Compound 3 shows a slight increase in the conductance with respect to free ligand 1, whereas incorporation of BF2 (compound 2) promotes the presence of two conductance states in the measurements. Additional experiments with control molecules point out that this bistability is related to the combination of MeS– anchoring groups and the BF2 moiety within the structure of the molecules. Theoretical calculations show that this can be explained by the presence of two conformers once compound 2 is anchored between the gold electrodes. An energy minimum is found for a flat structure but there is a dramatic change in the magnitude and orientation of dipole moment (favouring a non-flat conformer in the presence of an external electric field) due to a conformational change of one of the terminal MeS– groups. The results thus point to an intricate interplay between the applied bias voltage and the molecule dipole moment which could be the basis for designing new molecules aiming at controlling their conformation in devices.

Molecular electronics aims at exploiting the internal structure and electronic orbitals of molecules to construct functional building blocks(1). To date, however, the overwhelming majority of experimentally realized single-molecule junctions can be described as single quantum dots, where transport is mainly determined by the alignment of the molecular orbital levels with respect to the Fermi energies of the electrodes(2) and the electronic coupling with those electrodes(3,4). Particularly appealing exceptions include molecules in which two moieties are twisted with respect to each others(5,6) and molecules in which quantum interference effects are possible(7,8). Here, we report the experimental observation of pronounced negative differential conductance in the current-voltage characteristics of a single molecule in break junctions. The molecule of interest consists of two conjugated arms, connected by a non-conjugated segment, resulting in two coupled sites. A voltage applied across the molecule pulls the energy of the sites apart, suppressing resonant transport through the molecule and causing the current to decrease. A generic theoretical model based on a two-site molecular orbital structure captures the experimental findings well, as confirmed by density functional theory with non-equilibrium Green's functions calculations that include the effect of the bias. Our results point towards a conductance mechanism mediated by the intrinsic molecular orbitals alignment of the molecule.

et al., Fullerenes have attracted interest for their possible applications in various electronic, biological, and optoelectronic devices. However, for efficient use in such devices, a suitable anchoring group has to be employed that forms well-defined and stable contacts with the electrodes. In this work, we propose a novel fullerene tetramalonate derivate functionalized with trans-1 4,5-diazafluorene anchoring groups. The conductance of single-molecule junctions, investigated in two different setups with the mechanically controlled break junction technique, reveals the formation of molecular junctions at three conductance levels. We attribute the conductance peaks to three binding modes of the anchoring groups to the gold electrodes. Density functional theory calculations confirm the existence of multiple binding configurations and calculated transmission functions are consistent with experimentally determined conductance values., The work at TUDelft was supported by the EU through an advanced ERC grant (Mols@Mols); device fabrication was done at the Kavli Nanolab at Delft. The work at University of Chile was supported by Fondecyt Regular Project 1161775 (M.S. and J.L.M.), Fondecyt Regular Project 1140770, EU RISE (DAFNEOX) project SEP-210165479 (D.D.), and CONICYT/Fondecyt Postdoctoral Project 3150674 (C.G.C.). D.A. thanks CONICYT + PAI ‘Concurso nacional de apoyo al retorno de investigadores/as desde el extranjero, convocatoria 2014 82140014’ for financial support. Powered@NLHPC: This research was partially supported by the supercomputing infrastructure of the NLHPC (ECM-02). L.E. thanks the National Science Foundation [grant CHE-1408865] and the PREM Program [grant DMR-1205302] as well as the Robert A. Welch Foundation [grant AH-0033] for generous financial support.

The use of porphyrin molecules as building blocks of functional molecular devices has been widely investigated. The structural flexibility and well-developed synthetic chemistry of porphyrins allows their physical and chemical properties to be tailored by choosing from a wide library of macrocycle substituents and central metal atoms. Nature itself offers magnificent examples of processes that utilize porphyrin derivatives, such as the activation and the transport of molecular oxygen in mammals and the harvesting of sunlight in plant photosynthetic systems. In order to exploit the highly desirable functionality of porphyrins in artificial molecular devices, it is imperative to understand and control the interactions that occur at the molecule–substrate interface. Such interactions largely depend on the electronic and conformational structures of the adsorbed molecules, which can be studied using techniques such as scanning tunneling microscopy, UV photoemission spectroscopy, and X-ray photoemission spectroscopy, and on a theoretical level with density functional calculations. Recent studies on conjugated rod-like molecules have shown that molecular conductance measurements can be significantly affected by the binding geometry, coupling of the p orbitals to the leads, or p–p stacking between adjacent molecules. Herein, we present the results of a study of the interaction of laterally extended p-conjugated porphyrin molecules with electrodes by means of timeand stretching-dependent conductance measurements on molecular junctions. We further investigate strategies to reduce interactions of the molecular p electrons with the metal electrodes by modifying the chemical structure of the porphyrin molecules. We used the series of molecules represented in Figure 1a– c to examine the influence of the molecular structure on the formation of porphyrin single-molecule junctions. Since the thiol group is most commonly used to contact rod-like molecules to form straight molecular bridges, we first compared 5,10,15,20-tetraphenylporphyrin without thiol termination (H2-TPP; Figure 1a) to a nearly identical molecule with two thiol groups on opposite sides of the molecule (5,15di(p-thiophenyl)-10,20-di(p-tolyl)porphyrin (H2-TPPdT); Figure 1b). To investigate the influence of the molecular backbone geometry on the junction formation we further studied a thiol-terminated porphyrin molecule with two bulky pyridine axial groups attached through an octahedral Ru ion ([Ru{5,15-di(p-thiophenyl)-10,20-diphenylporphyrin}(py)2] (Ru-TPPdT); Figure 1c). As a consequence of steric hindrance, the pyridine groups in Ru-TPPdT reduce the direct interaction of the metal electrodes with the p face of the porphyrin. A similar strategy was used previously. Prior to electrical characterization, the molecules were deposited using self-assembly from solution. To study the conductance of these molecules we used lithographic mechanically controllable break junctions (MCBJs) in vacuum at room temperature. The layout of an MCBJ device in a threepoint bending mechanism is shown in Figure 1d. Details concerning the synthesis of the molecules and the experimental procedures are given in the Supporting Information. Sets of 1000 consecutive breaking traces from individual junctions were analyzed numerically to construct “trace histograms” of the conductance (log10G versus the electrode displacement d). This statistical method maps the breaking dynamics of the junctions beyond the point of rupture of the last monatomic gold contact (defined as d= 0), which has a conductance of one quantum unit G0= 2e h. Areas of high counts represent the most typical breaking behavior of the molecular junctions. Figure 2 presents trace histograms as well as examples of individual breaking traces for acetone as reference, H2-TPP, H2-TPPdT, and Ru-TPPdT. For all three porphyrin molecules as well as for the reference sample several junctions were measured (see the Supporting Information). Herein, we only show a typical set of junctions. In the junction which was exposed to pure acetone (Figure 2a), the Au bridge initially gets stretched until a plateau around the conductance quantum (G G0) is observed (only visible in the individual traces shown in [*] M. L. Perrin, F. Prins, Dr. C. A. Martin, Prof. Dr. H. S. J. van der Zant, Dr. D. Dulic Kavli Institute of Nanoscience, Delft University of Technology Lorentzweg 1, 2628 CJ Delft (The Netherlands) E-mail: d.dulic@tudelft.nl

et al., We studied the electronic and conductance properties of two thiophene–curcuminoid molecules, 2-thphCCM (1) and 3-thphCCM (2), in which the only structural difference is the position of the sulfur atoms in the thiophene terminal groups. We used electrochemical techniques as well as UV/Vis absorption studies to obtain the values of the HOMO–LUMO band gap energies, showing that molecule 1 has lower values than 2. Theoretical calculations show the same trend. Self-assembled monolayers (SAMs) of these molecules were studied by using electrochemistry, showing that the interaction with gold reduces drastically the HOMO–LUMO gap in both molecules to almost the same value. Single-molecule conductance measurements show that molecule 2 has two different conductance values, whereas molecule 1 exhibits only one. Based on theoretical calculations, we conclude that the lowest conductance value, similar in both molecules, corresponds to a van der Waals interaction between the thiophene ring and the electrodes. The one order of magnitude higher conductance value for molecule 2 corresponds to a coordinate (dative covalent) interaction between the sulfur atoms and the gold electrodes., This work has been funded by the FONDECYT REGULAR grants 1110206,1140770, and 1140199, PAI-CONICYT 79150041, Conicyt PFCHA 21140734, ANILLO project Act 1117, Millenium Project RC120001, the Dutch funding agencies FOM and NWO/OCW, by the EU through a RISE (DAFNEOX) project, SEP-210165479 by the MICINN of Spain (projects CTQ2012-32247 and MAT2013-47869- C4-2-P). N.A.-A. and R.D.-T. also acknowledge financial support from MINECO through the “Severo Ochoa” Programme for Centres of Excellence in R&D (SEV-2015-0496).

We have investigated charge transport in ZnTPPdT–Pyr (TPPdT: 5,15-di(p-thiolphenyl)-10,20-di(p-tolyl)porphyrin) molecular junctions using the lithographic mechanically controllable break-junction (MCBJ) technique at room temperature and cryogenic temperature (6 K). We combined low-bias statistical measurements with spectroscopy of the molecular levels in the form of I(V) characteristics. This combination allows us to characterize the transport in a molecular junction in detail. This complex molecule can form different junction configurations, having an observable effect on the trace histograms and the current–voltage (I(V)) measurements. Both methods show that multiple, stable single-molecule junction configurations can be obtained by modulating the interelectrode distance. In addition we demonstrate that different ZnTPPdT–Pyr junction configurations can lead to completely different spectroscopic features with the same conductance values. We show that statistical low-bias conductance measurements should be interpreted with care, and that the combination with I(V) spectroscopy represents an essential tool for a more detailed characterization of the charge transport in a single molecule.

have been demonstrated. Photoswitching effects are based on the reorganization of the p-conjugated backbone of the molecule that consequently leads to different physical properties. Knowledge of the vital factors governing photochromic processes is essential for future utilization of diarylethenes as smart materials as well as for a fundamental understanding of the photoprocesses involved. Hence, temperature-dependent studies are necessary to reveal new aspects and limits of the switching process, as previously shown by measurements at elevated temperatures. [19] Additionally, determining possible switching restrictions at low temperatures is particularly important in view of carrying out conductance measurements at the single-molecular level, which are restricted at room temperature because of the high mobility of the gold atoms constituting the electrodes in this type of experiment. In order to achieve stability of the metal/molecule/metal system it is often necessary to perform measurements at low temperatures. [20] Herein, we explore the temperature dependence of the photochemical behavior of dithienylcyclopentenes. We report the suppression of the ring-opening process with decreasing temperature, leading to the complete absence of the photoreaction below a cutoff temperature. By contrast, we demonstrate that the reverse ring-closure process shows no significant temperature dependence above 115 K. These observations of the temperature dependence for the ring-opening process are essential to understand the behavior of these molecular switches before they can be used in advanced technological applications. The theoretical description of the ringopening process is not completely understood. Furthermore, the observed suppression of the ring opening might have important implications for gating of photochromic processes. Like for other photoreactions that have a photostationary state with less than 100% product, the ring-closure process for diarylethenes is accompanied by ring opening, because both forms have absorption peaks in the UV region, hence decreasing total conversions. [21] On the other hand, if ring opening can be blocked, total conversion increases. [22]

We investigate the mechanics of lithographically defined mechanically controllable break junctions, both theoretically and experimentally. It is shown that the relationship between controlled deflection and junction opening depends on the details of the break junction geometry. As a result the generally used formula for the ``attenuation factor'' $r$ needs to be corrected by a factor $\ensuremath{\zeta}$. For typical break junction geometries, we obtain $2\ensuremath{\lesssim}\ensuremath{\zeta}\ensuremath{\lesssim}4$.

We present a study of electronic transport in short (12-base-pair) DNA duplexes covalently bonded (via thiol groups) to two gold electrodes obtained by a mechanically controllable break junction (MCJB) technique in dry conditions. A large number of DNA junctions have been repeatedly formed in order to obtain a conductance histogram that reveals a peak which corresponds to the conductance of a single DNA molecule. We observed that the conductivity of a DNA increases upon increasing the content of G:C base pairs in the duplex. With our method we are able to obtain a reliable value of a single DNA conductance and subsequently measure its current-voltage (I-V) characteristics. In contrast to the electronic transport measurements performed with long DNA sequences (hundreds of base pairs) where the obtained conductance values vary a lot with environmental conditions, our values obtained for the short DNA sequences are consistent with the values reported for comparable sequences in aqueous solution.