Search

Three-dimensional numerical simulations are performed to study the stability of a sedimenting suspension of weakly flexible fibers. It is well known that a suspension of rigid rods sedimenting under gravity at low Reynolds number is unstable to concentration fluctuations owing to hydrodynamic interactions. Flexible fibers, however, reorient while settling and even weak flexibility can alter their collective dynamics. In our recentwork [Manikantan et al., "The instability of a sedimenting suspension of weakly flexible fibres," J. Fluid Mech. 756, 935-964 (2014)], we developed a mean-field theory to predict the linear stability of such a system. Here, we verify these predictions using accurate and efficient particle simulations based on a slender-body model. We also demonstrate the mechanisms by which flexibility-induced reorientation alters suspension microstructure, and through it, its stability. Specifically, we first show that the anisotropy of the base state in the case of a suspension of flexible fibers has a destabilizing effect compared to a suspension of rigid rods. Second, a conflicting effect of flexibility is also shown to suppress particle clustering and slow down the growth of the instability. The relative magnitude of filament flexibility and rotational Brownian motion dictates which effect dominates, and our simulations qualitatively follow theoretically predicted trends. The mechanism for either effects is tied to the flexibilityinduced reorientation of particles, which we illustrate using velocity and orientation statistics from our simulations. Finally, we also show that, in the case of an initially homogeneous and isotropic suspension, flexibility always acts to suppress the growth of the instability. [ABSTRACT FROM AUTHOR]

An analytical expression for the fluctuation-rounded stretch-coil transition of semiflexible polymers in extensional flows is derived. The competition between elasticity and tension is known to cause a buckling instability in filaments placed near hyperbolic stagnation points and the effect of thermal fluctuations on this transition has yet to receive full quantitative treatment. Motivated by the findings of recent experiments as well as our simulations, we solve for the amplitude of the first buckled mode near the onset of the instability. This reveals a stochastic supercritical bifurcation, which is in excellent agreement with full numerical simulations. [ABSTRACT FROM AUTHOR]

We study hydrodynamic interactions and clustering mechanisms of active membrane inclusions within lipid bilayers. Pairs of inclusions display unique oscillatory dynamics that disappear when the 3D fluid adjacent to the membrane is confined. We reduce the governing equations to a coupled dynamical system whose phase behavior reveals the striking role of bulk confinement in enhancing cluster formation within the membrane. Using numerical simulations, we then extend this finding to demonstrate the role of confinement in controlling large-scale aggregation of membrane inclusions. [ABSTRACT FROM AUTHOR]

The dynamics and transport properties of Brownian semiflexible filaments suspended in a two-dimensional array of counter-rotating Taylor-Green vortices are investigated using numerical simulations based on slender-body theory for low-Reynolds-number hydrodynamics. Such a flow setup has been previously proposed to capture some of the dynamics of biological polymers in motility assays. A buckling instability permits elastic filaments to migrate across such a cellular lattice in a 'Brownian-like' manner even in the athermal limit. However, thermal fluctuations alter these dynamics qualitatively by driving polymers across streamlines, leading to their frequent trapping within vortical cells. As a result, thermal fluctuations, characterized here by the persistence length, are shown to lead to subdiffusive transport at long times, and this qualitative shift in behavior is substantiated by the slow decay of waiting-time distributions as a consequence of trapping events during which the filaments remain in a particular cell for extended periods of time. Velocity and mass distributions of polymers reveal statistically preferred positions within a unit cell that further corroborate this systematic shift from transport to trapping with increasing fluctuations. Comparisons to results from a continuum model for the complementary case of rigid Brownian rods in such a flow also highlight the role of elastic flexibility in dictating the nature of polymer transport. [ABSTRACT FROM AUTHOR]