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Glomerella leaf spot (GLS) and bitter rot (BR), caused by Colletotrichum spp., are major diseases on apple in southern Brazil. Among integrated pest management tools for disease management in commercial orchards, fungicides remain an important component. This study aimed to identify Colletotrichum spp. from cultivar Eva in Paraná state orchards; evaluate their in vitro sensitivity to cyprodinil, tebuconazole, iprodione, and fluazinam; and determine the baseline in vitro sensitivity of these isolates to benzovindiflupyr and natamycin. Most isolates belonged to Colletotrichum melonis and C. nymphaeae of the C. acutatum species complex. The two species varied in sensitivity to fluazinam and tebuconazole, but no variability was found for any other fungicide. The lowest 50% effective concentration (EC 50 ) values of Colletotrichum spp. were observed for cyprodinil (mean EC 50 < 0.02) and benzovindiflupyr (mean EC 50 < 0.05); EC 50 values were intermediate for fluazinam (mean EC 50 < 0.33) and tebuconazole (mean EC 50 < 0.14), and they were highest for natamycin (mean EC 50 < 5.56) and iprodione (mean EC 50 > 12). Cyprodinil and fluazinam are registered for use in Brazil for apple disease management but not specifically for GLS and BR. Tebuconazole is one of the few products registered for Colletotrichum spp. control in apples. In conclusion, flowers and fruitlets can serve as sources of inoculum for GLS and BR disease; C. acutatum was the predominant species complex in these tissues; cyprodinil and fluazinam applications may suppress GLS and BR; and benzovindiflupyr and natamycin warrant further investigation for GLS and BR disease control of apple due to comparably high in vitro sensitivity.

The increased demand for pesticide-free foods has also increased the search for healthier and environmentally friendly alternatives in agriculture. Essential oils are known to possess natural antifungal properties, becoming a reliable alternative for commercial fungicides, especially for postharvest decay control. However, essential oils are volatile and photodegradable, which reduces their long-term activities. This work presents the development of a lemongrass essential oil-containing poly(lactic acid) nanocapsules. They have shown in vitro antifungal activity against Colletotrichum acutatum and Colletotrichum gloeosporioides with a MIC dosage of 0.1% (v/v) for both phytopathogens. In the in vivo assay with postharvest apples, the ones treated with encapsulated essential oil showed bitter rot lesions three times smaller than the ones treated with non-encapsulated essential oil, or in comparison to the apples in positive control. The methodology led to stable nanocapsules with spherical morphology, a mean diameter of 96.4 nm, and with an encapsulation efficiency of 99%., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Ltd. All rights reserved.)

The bitter rot of apple is caused by Colletotrichum spp. and is a serious pre-harvest disease that can manifest in postharvest losses on harvested fruit. In this study, we obtained genome sequences from four different species, C. chrysophilum, C. noveboracense, C. nupharicola, and C. fioriniae, that infect apple and cause diseases on other fruits, vegetables, and flowers. Our genomic data were obtained from isolates/species that have not yet been sequenced and represent geographic-specific regions. Genome sequencing allowed for the construction of phylogenetic trees, which corroborated the overall concordance observed in prior MLST studies. Bioinformatic pipelines were used to discover CAZyme, effector, and secondary metabolic (SM) gene clusters in all nine Colletotrichum isolates. We found redundancy and a high level of similarity across species regarding CAZyme classes and predicted cytoplastic and apoplastic effectors. SM gene clusters displayed the most diversity in type and the most common cluster was one that encodes genes involved in the production of alternapyrone. Our study provides a solid platform to identify targets for functional studies that underpin pathogenicity, virulence, and/or quiescence that can be targeted for the development of new control strategies. With these new genomics resources, exploration via omics-based technologies using these isolates will help ascertain the biological underpinnings of their widespread success and observed geographic dominance in specific areas throughout the country. [ABSTRACT FROM AUTHOR]

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Bitter rot (BR), caused by Colletotrichum spp., is one of the most prevalent fungal diseases of apple worldwide. Some Colletotrichum spp. also causes Glomerella leaf spot (GLS), a disease restricted to a few regions worldwide. Recently, we reported the presence of C. siamense causing BR on low-chill apple cultivars in central Argentina. In further studies we detected the presence of apple leaf spot also associated to Colletotrichum spp. Thus, this study was focused to determine and characterize the Colletotrichum species involved in fruit rot and apple leaf spot diseases in Santa Fe, Argentina. A total of thirty-one isolates were obtained from symptomatic fruits and leaves. Morphological characteristics in combination with multilocus phylogenetic analysis revealed that Colletotrichum siamense is the single species associated with fruit rot and leaf spots on low-chill apples in Santa Fe, Argentina. Although in this study we obtained and characterized isolates of C. siamense from leaf spot, we found remarkable differences with typical GLS indicating that this disease is not present in Argentina until now. These findings will be useful to undertake studies of fungicide sensitivity and to understand the epidemiology of the disease in the region based on identified species. [ABSTRACT FROM AUTHOR]

Bitter rot caused by Colletotrichum species is a common fruit rotting disease of apple and one of the economically important disease in worldwide. In 2015 and 2016, distinct symptoms of bitter rot disease were observed in apple orchards in five regions of South Korea. In the present study, infected apples from these regions were utilized to obtain eighteen isolates of Colletotrichum spp. These isolates were identified and characterized according to their morphological characteristics and nucleotide sequence data of internal transcribed spacer regions and glyceraldehyde-3-phosphate-dehydrogenase. Molecular analyses suggested that the isolates of Colletotrichum causing the bitter rot disease in South Korea belong to 4 species: C. siamense; C. fructicola; C. fioriniae and C. nymphaeae. C. siamense and C. fructicola belonged to Musae Clade of C. gloeosporioides complex species while C. fioriniae and C. nymphaeae belonged to the Clade 3 and Clade 2 of C. acutatum complex species, respectively. Additionally, we also found that the isolates of C. gloeosporioides species-complex were more aggressive than those in the C. acutatum species complex via pathogenicity tests. Taken together, our results suggest that accurate identification of Colletotrichum spp. within each species complex is required for management of bitter rot disease on apple fruit in South Korea.

Bitter rot caused by the fungal genus Colletotrichum is a well-known, common disease of apple and causes significant yield loss. In 2013, six fungal strains were isolated from Fuji apple fruits exhibiting symptoms of bitter rot from Andong, Korea. These strains were identified as Colletotrichum fructicola and C. siamense based on morphological characteristics and multilocus sequence analysis of the internal transcribed spacer rDNA, actin, calmodulin, chitin synthase, and glyceraldehyde-3-phosphate dehydrogenase Pathogenicity tests confirmed the involvement of C. fructicola and C. siamense in the development of disease symptoms on apple fruits. This is the first report of C. fructicola and C. siamense causing bitter rot on apple fruit in Korea. [ABSTRACT FROM AUTHOR]

Colletotrichum fructicola causes two important diseases on apple in Southern Brazil, bitter rot (ABR) and Glomerella leaf spot (GLS). In this pathosystem, the Colletotrichum ability to cause different symptoms could be related to differences of extracellular enzymes produced by the fungi. Thus, the objectives of this study were to compare the production of these enzymes between ABR- and GLS-isolate in vitro and to evaluate their involvement on infected apple leaves with C. fructicola. In agar plate enzymatic assay, ABR- showed significantly higher amylolytic and pectolytic activity than GLS-isolate. In contrast, for lipolytic and proteolytic no significant differences were observed between isolates. In culture broth, ABR-isolate also had higher activity of pectin lyase (PNL), polygalacturonase (PG) and laccase (LAC). Notably, LAC was significantly five-fold higher in ABR- than GLS-isolate. On the other hand, in infected apple leaves no significant difference was observed between isolates for PNL, PG and LAC. Although differences in extracellular enzymes of ABR- and GLS-isolate have not been observed in vivo, these results contributed to highlight the importance to investigate such enzymes in depth. [ABSTRACT FROM AUTHOR]

With 3 figures and 4 tables Abstract Penicillium expansum and Colletotrichum acutatum cause blue mould and bitter rot of apples during storage which results in significant economic losses. Resistance to these pathogens in commercial apple cultivars has not been documented in the literature. An apple germplasm collection, from the centre of origin in Kazakhstan, is maintained in Geneva, New York. This collection represents a more diverse apple gene pool than commercial cultivars and was evaluated for resistance to the pathogens that cause blue mould and bitter rot. Resistance reactions were skewed towards susceptibility for both fungi and comprised the majority of accessions examined. However, resistance to P. expansum was confirmed in select accessions over multiple years. Maturation patterns and quality indices for soluble solids and acidity, which may also affect susceptibility, were highly variable and represent the genetic diversity of the germplasm collection. Resistance in four accessions to C. acutatum and two accessions resistant to both P. expansum and C. acutatum are reported here for the first time. Data from this study will serve as a foundation for conventional apple breeding programmes and molecular genetics investigations to provide resistance against blue mould and bitter rot in commercial apple varieties. [ABSTRACT FROM AUTHOR]

Either naturally infected or artificially inoculated sweet cherry (Prunus avium) buds on fruit spurs (mainly containing generative buds) and on 1-year-old shoots (mainly containing vegetative buds) were examined for presence of Colletotrichum acutatum prior to the beginning of spring growth in each of 4 years. Artificial inoculations were made during the growing seasons preceding the bud sampling. The plant material was incubated moist for either 14 (fruit spurs) or 21 (1-year-old shoots) days at 20°C. Following moist incubation at 20°C, C. acutatum frequently sporulated on buds of fruit spurs and shoots. The fungus sporulated in orange, short-thread or hornlike structures, mainly on distal parts of the buds, and was usually easily visible with the unaided eye. The incidence of infected buds on naturally infected and inoculated fruit spurs was 2 to 80% and 38 to 79%, respectively. Incidence on naturally infected and inoculated shoots was 0 to 53% and 4 to 45%, respectively. On buds within fruit spurs, the incidence of C. acutatum was significantly higher on generative than on vegetative buds. This investigation shows that buds can host C. acutatum and thus are likely to be an important source of primary inoculum for anthracnose of sweet cherry. [ABSTRACT FROM AUTHOR]

‘Golden Delicious’ apples were wound inoculated with conidial suspensions of either Colletotrichum acutatum or Penicillium expansum, then treated with heat (38 °C) for 4 days, sodium bicarbonate, and/or one of two heat tolerant biocontrol agents (yeasts). Following four months storage at 0 °C, the apples were left at room temperature for two weeks. Populations of antagonists were stable throughout the experiment and were higher on the heated than the non-heated fruit. Both antagonists reduced decay caused by P. expansum, whereas heat or heat in combination with either antagonist eliminated decay. Either heat or the antagonists alone reduced decay caused by C. acutatum, but a combination of the two was required to completely eliminate decay caused by this pathogen. Adding sodium bicarbonate to the heated or antagonist-treated fruit had little effect on decay caused by either pathogen but when used on non-heated fruit, it significantly reduced decay severity caused by P. expansum after four months at 0 °C. The goal of this research is to combine alternative methods of control to provide an effective substitute for synthetic pesticides. [Copyright &y& Elsevier]

Symptoms of bitter rot were observed on apple and pear fruits in the field and in storage in Croatia between 2009 and 2011. Fifteen Colletotrichum isolates from apple and two from pear were collected and identified by sequencing of the ITS1 and ITS2 regions of the ribosomal DNA. Phylogenetic analysis revealed that ten isolates from apple and two isolates from pear could be identified as Colletotrichum fioriniae, five isolates from apple were clustered in Colletotrichum clavatum, while one isolate was in the Colletotrichum acutatum A7 group. All isolates caused typical bitter rot symptoms when inoculated on apple and pear fruits. [ABSTRACT FROM AUTHOR]