1. Reference Susceptibility Testing and Genomic Surveillance of Clostridioides difficile, United States, 2012-17.
- Author
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Gargis AS, Karlsson M, Paulick AL, Anderson KF, Adamczyk M, Vlachos N, Kent AG, McAllister G, McKay SL, Halpin AL, Albrecht V, Campbell D, Korhonen LC, Elkins CA, Rasheed JK, Guh AY, McDonald LC, and Lutgring JD
- Subjects
- Humans, United States epidemiology, Vancomycin pharmacology, Vancomycin therapeutic use, Metronidazole therapeutic use, Clindamycin therapeutic use, Moxifloxacin therapeutic use, Clostridioides genetics, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents therapeutic use, Genomics, Microbial Sensitivity Tests, Ribotyping, Clostridioides difficile, Clostridium Infections epidemiology, Clostridium Infections drug therapy
- Abstract
Background: Antimicrobial susceptibility testing (AST) is not routinely performed for Clostridioides difficile and data evaluating minimum inhibitory concentrations (MICs) are limited. We performed AST and whole genome sequencing (WGS) for 593 C. difficile isolates collected between 2012 and 2017 through the Centers for Disease Control and Prevention's Emerging Infections Program., Methods: MICs to 6 antimicrobial agents (ceftriaxone, clindamycin, meropenem, metronidazole, moxifloxacin, and vancomycin) were determined using the reference agar dilution method according to Clinical and Laboratory Standards Institute guidelines. Whole genome sequencing was performed on all isolates to detect the presence of genes or mutations previously associated with resistance., Results: Among all isolates, 98.5% displayed a vancomycin MIC ≤2 μg/mL and 97.3% displayed a metronidazole MIC ≤2 μg/mL. Ribotype 027 (RT027) isolates displayed higher vancomycin MICs (MIC50: 2 μg/mL; MIC90: 2 μg/mL) than non-RT027 isolates (MIC50: 0.5 μg/mL; MIC90: 1 μg/mL) (P < .01). No vanA/B genes were detected. RT027 isolates also showed higher MICs to clindamycin and moxifloxacin and were more likely to harbor associated resistance genes or mutations., Conclusions: Elevated MICs to antibiotics used for treatment of C. difficile infection were rare, and there was no increase in MICs over time. The lack of vanA/B genes or mutations consistently associated with elevated vancomycin MICs suggests there are multifactorial mechanisms of resistance. Ongoing surveillance of C. difficile using reference AST and WGS to monitor MIC trends and the presence of antibiotic resistance mechanisms is essential., Competing Interests: Potential conflicts of interest . L. C. M. reports participation on a Data Safety Monitoring Board or Advisory Board for NIH/DMID (Protocol 19-0021: A Randomized, Double-blinded Evaluation of CRS3123 in Patients with Non-severe to Severe Clostridium difficile Infection). Emerging Infections Program C. difficile Infection Working Group authors: G. D. received grant funding from Pfizer Inc. S. F. received grant funding from Pfizer Inc. D. G. received consulting fees from Destiny Pharma PLC. M.K. reports an advisory role for the Clinical and Laboratory Standards Institute (CLSI) AST Subcommittee. All other authors report no potential conflicts. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed., (Published by Oxford University Press on behalf of Infectious Diseases Society of America 2022.)
- Published
- 2023
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