1. Molecular characterisation of novel reassortants of the G57 genotype of low-pathogenic avian influenza H9N2 virus isolated from poultry farms in Malaysia.
- Author
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Gunasekara E, Hair-Bejo M, Aini I, and Omar AR
- Subjects
- Animals, Malaysia epidemiology, Poultry virology, Farms, Viral Proteins genetics, Influenza A Virus, H9N2 Subtype genetics, Influenza A Virus, H9N2 Subtype isolation & purification, Influenza A Virus, H9N2 Subtype classification, Reassortant Viruses genetics, Reassortant Viruses isolation & purification, Influenza in Birds virology, Influenza in Birds epidemiology, Phylogeny, Genotype, Chickens virology, Poultry Diseases virology, Poultry Diseases epidemiology
- Abstract
In late 2017, Malaysia reported repeated outbreaks of low-pathogenic avian influenza virus (LPAI) H9N2 infections in commercial poultry flocks. Two H9N2 viruses, A/chicken/Malaysia/Negeri Sembilan/UPM994/2018 and A/chicken/Malaysia/Johore/UPM2033/2019, which were isolated from breeder and layer flocks in Peninsular Malaysia, were characterised in this study. Phylogenetic analysis revealed that both viruses were multiple-genotype reassortant strains with genes originating from Y280-like (HA gene), F/98-like (NS, NP and PA), G1-like (M and PB2), and Korean-like (PB1) lineages, indicating that they belong to a novel genotype that is divergent from the G57 lineage of Chinese origin. Both isolates were predicted to have a dibasic cleavage site (333-PSRSSRGLF-341) in the HA gene cleavage locations. Thus, the novel Malaysian H9N2 strain is a Y280-like virus resembling H9N2 isolates from Indonesia, Taiwan, Japan, and Cambodia. This virus is of the G57 lineage but has a novel genotype of the PB1 gene originating from a Korean-lineage H9N2 virus, which has not been detected before in the region., Competing Interests: Declarations. Conflict of interest: The authors report no potential conflict of interest., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.)
- Published
- 2024
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