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The chicken major histocompatibility complex (MHC) is located on the microchromosome 16 and is described as the most variable region in the genome. The genes of the MHC play a central role in the immune system. Particularly, genes encoding proteins involved in the antigen presentation to T cells. Therefore, describing the genetic polymorphism of this region is crucial in understanding host-pathogen interactions. The tandem repeat LEI0258 is located within the core area of the B region of the chicken MHC (MHC-B region) and its genotypes correlate with serology. This marker was used to provide a picture of the worldwide diversity of the chicken MHC-B region and to categorize chicken MHC haplotypes. More than 1,600 animals from 80 different populations or lines of chickens from Africa, Asia, and Europe, including wild fowl species, were genotyped at the LEI0258 locus. Fifty novel alleles were described after sequencing. The resulting 79 alleles were classified into 12 clusters, based on the SNPs and indels found within the sequences flanking the repeats. Furthermore, hypotheses were formulated on the evolutionary dynamics of the region. This study constitutes the largest variability report for the chicken MHC and establishes a framework for future diversity or association studies.

Background: Chickens represent an important animal genetic resource for improving farmers' income in Africa. The present study provides a comparative analysis of the genetic diversity of village chickens across a subset of African countries. Four hundred seventy-two chickens were sampled in 23 administrative provinces across Cameroon, Benin, Ghana, Côte d'Ivoire, and Morocco. Geographical coordinates were recorded to analyze the relationships between geographic distribution and genetic diversity. Molecular characterization was performed with a set of 22 microsatellite markers. Five commercial lines, broilers and layers, were also genotyped to investigate potential gene flow. A genetic diversity analysis was conducted both within and between populations., Results: High heterozygosity levels, ranging from 0.51 to 0.67, were reported for all local populations, corresponding to the values usually found in scavenging populations worldwide. Allelic richness varied from 2.04 for a commercial line to 4.84 for one population from Côte d'Ivoire. Evidence of gene flow between commercial and local populations was observed in Morocco and in Cameroon, which could be related to long-term improvement programs with the distribution of crossbred chicks. The impact of such introgressions seemed rather limited, probably because of poor adaptation of exotic birds to village conditions, and because of the consumers' preference for local chickens. No such gene flow was observed in Benin, Ghana, and Côte d'Ivoire, where improvement programs are also less developed. The clustering approach revealed an interesting similarity between local populations found in regions sharing high levels of precipitation, from Cameroon to Côte d'Ivoire. Restricting the study to Benin, Ghana, and Côte d'Ivoire, did not result in a typical breed structure but a south-west to north-east gradient was observed. Three genetically differentiated areas (P<0.01) were identified, matching with Major Farming Systems (namely Tree Crop, Cereal-Root Crop, and Root Crop) described by the FAO., Conclusions: Local chickens form a highly variable gene pool constituting a valuable resource for human populations. Climatic conditions, farming systems, and cultural practices may influence the genetic diversity of village chickens in Africa. A higher density of markers would be needed to identify more precisely the relative importance of these factors.

Chicks of both sexes issued from the cross of heterozygous K/k+ cocks for the slow-feathering sex linked K allele with k+ (rapid feathering) hens, were compared from the age of 4 to 10 weeks at two ambient temperatures. In individual cages, 30 male chicks of each genotype (K/k+ and k+/k+) were raised at 21 degrees C, and 60 others, distributed in the same way, were raised at 31 degrees C. 71 K/W females and 69 k+/W females were raised in a floor pen at 31 degrees C till 10 weeks of age. In the males, the body weight, feed consumption and feed efficiency at different ages were influenced only by temperature (lower growth rate and feed intake at 31 degrees C); no significant effects of the genotype at locus K nor genotype x temperature interaction were observed. In females, all at 31 degrees C, the genotype (K/W or k+/W) had no significant effect on growth rate. Plumage weight and weight of abdominal fat (absolute or related to body weight) were measured on half of the males of each group in individual cages, at 10 weeks of age. Moreover, on 36 males and 48 females of the two genotypes, in a group battery at 31 degrees C, the absolute and relative weight of plumage were measured on a sample every two weeks between 4 and 10 weeks. In the first case, no significant effect of genotype appeared. In the second case, an interaction between age and genotype was suggested from plumage weight: its growth, especially in male chicks, appears to be temporarily and unexpectedly faster from 4 to 6 weeks of age for the K/k+ and K/W genotypes.