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Surface pigment data from a transect along the eastern boundary of the Atlantic Ocean was analysed using CHEMTAX to yield more detailed information on the composition of phytoplankton communities. Total chlorophyll a concentrations varied from 0.03 mg m?3 in a northern oligotrophic region to 30.3 mg m?3 in the Benguela ecosystem. Diatoms dominated the Benguela, while both diatoms and haptophytes were the major groups in the Canary ecosystem and the temperate NE Atlantic. Prochlorococcus was the most prominent group in the southern oligotrophic region (15.5°S-15°N) although haptophytes were also a significant component of the population. In contrast, haptophytes dominated the northern oligotrophic region (21°-40°N). Photo-pigment indices indicated that chlorophyll b was mainly associated with prasinophytes and chlorophyll c with diatoms. Elevated photosynthetic carotenoids were due to increased proportions of haptophytes, but also linked with diatoms and dinoflagellates. Photoprotective carotenoids were more prominently associated with Prochlorococcus and to a lesser extent to Synechococcus.

The Agulhas Current is a major Western Boundary Current that flows along the southeast slope of southern Africa and has an influence on the biogeochemistry of adjacent ecosystems through localised upwelling of cool, nutrient-rich water up the slope and onto the shelf. Variability in pigments and absorption were therefore examined to determine the adaptation of phytoplankton communities to changing nutrient and irradiance conditions during mid-summer. Chlorophyll a concentrations varied from 0.1 mg m−3 offshore to 7.3 mg m−3 inshore in response to the nutrient enrichment. CHEMTAX analysis revealed that diatoms were the dominant group at most of the inshore stations, mixed populations of diatoms, haptophytes and prasinophytes characterised the shelf edge populations, while haptophytes and Prochlorococcus dominated the offshore stations over the slope. Diatom populations were associated with cool, lower salinity water and prokaryotes with warm, higher salinity water, while flagellates occurred in both water types. Nutrient relationships deviated from Redfield ratios and there appeared to be a greater uptake of silicate at elevated nutrient levels where diatoms were dominant, but nitrate was preferably utilized at low concentrations when flagellates and prokaryotes comprised the communities. Populations acclimated to changing irradiance by adjustments in their absorption and proportion of accessory pigments. Prokaryote dominated communities had high chlorophyll-specific absorption coefficients and a high proportion of chlorophyll a and photoprotective carotenoids. Diatoms had low chlorophyll-specific absorption and elevated proportions of photosynthetic carotenoids and chlorophyll a. Flagellate dominated communities had intermediate chlorophyll-specific absorption and had elevated absorption by chlorophyll a, chlorophyll b and photosynthetic carotenoids. Ratios of UV absorption at 330 nm to chlorophyll a absorption at 676 nm displayed an increasing trend with increased irradiance near the surface, particularly for prokaryotes. Overall, nutrients and irradiance were the main drivers influencing phytoplankton adaptation and acclimation.

During February 2010, studies of primary production (PP) and physiology were conducted at five selected sites in the KwaZulu-Natal (KZN) Bight of the Agulhas ecosystem as part of a programme to elucidate the influence of major physical driving forces and nutrient inputs on the structure and functioning of biological communities. These sites were located in the vicinity of the Durban lee eddy, in the midshelf region of the central part of the bight, off the Thukela Mouth, and to the north and south of Richards Bay. At four of the sites, chlorophyll a ranged from 0.10 to 1.44 mg m–3 and integrated PP ranged between 0.35 and 2.58 g C m–2 d–1. The highest biomass and PP, which were comparable to those observed in a wind-driven upwelling system, were associated with a diatom community observed at the midshelf site, and varied between 0.26 and 4.27 mg m–3 and 7.22 and 9.89 g C m–2 d–1, respectively. Environmental conditions at each of the sites differed substantially and appeared to be influential in initiating...

Phytoplankton size structure is an important indicator of the state of the pelagic ecosystem. Stimulated by the paucity of in situ observations on size structure, and by the sampling advantages of autonomous remote platforms, new efforts are being made to infer the size-structure of the phytoplankton from oceanographic variables that may be measured at high temporal and spatial resolution, such as total chlorophyll concentration. Large-scale analysis of in situ data has revealed coherent relationships between size-fractionated chlorophyll and total chlorophyll that can be quantified using the three-component model of Brewin et al. (2010). However, there are variations surrounding these general relationships. In this paper, we first revise the three-component model using a global dataset of surface phytoplankton pigment measurements. Then, using estimates of the average irradiance in the mixed-layer, we investigate the influence of ambient light on the parameters of the three-component model. We observe significant relationships between model parameters and the average irradiance in the mixed-layer, consistent with ecological knowledge. These relationships are incorporated explicitly into the three-component model to illustrate variations in the relationship between size-structure and total chlorophyll, ensuing from variations in light availability. The new model may be used as a tool to investigate modifications in size-structure in the context of a changing climate.

Investigations of primary production (PP) were undertaken in the southern Benguela ecosystem during two research surveys in October 2006 and May 2007. Significant differences in environmental conditions, as well as biomass and PP, were observed between October and May. During October, integrated biomass and PP were significantly higher, ranging from 20.43 to 355.01 mg m −2 , and 0.71 to 6.98 g C m −2 d −1 , respectively, than in May, where the range was 47.92–141.79 mg m −2 , and 0.70–3.35 g C m −2 d −1 , respectively. Distribution patterns indicated low biomass and PP in newly upwelled water along the coast, higher biomass and PP in the mid-shelf region, while lower values were observed at and beyond the shelf edge. Latitudinal variations showed consistently higher biomass and PP in the St. Helena Bay region compared to biomass and PP south of Cape Town. During both surveys, phytoplankton communities were comprised primarily of diatoms and small flagellates, with no significant differences. Phytoplankton adaptation to environmental variability was characterised by increased P m B and E k under elevated temperatures and irradiance, while no clear relationships were evident for α B . Generalised Additive Models (GAMs) showed that photosynthetic parameters were all significant predictors of photosynthesis rates ( P z ), with P m B being the most important, accounting for 36.97% of the deviance in P z . However, biomass levels and environmental conditions exerted a much greater influence on P z , with irradiance explaining the largest proportion (68.24%) of the deviance. Multiple predictor GAMs revealed that 96.26% of the deviance in P z could be explained by a model which included nitrate, chlorophyll a , and irradiance.

An investigation of phytoplankton pigment and absorption characteristics was undertaken during three research cruises in the Mozambique Channel to elucidate community structure and examine the adaptation of populations to mesoscale features at the surface and the deep chlorophyll maximum (DCM). Total chlorophyll a concentration (TChla) at the surface was determined to be greater in cyclonic eddies than in anticyclones, while TChla in divergence and shelf zones were similar to cyclones, with frontal zones being slightly lower. TChla at the DCM was similar for all categories, although there was a tendency for anticyclones to have lower TChla. Prokaryotes were the most significant phytoplankton group at the surface, with small flagellates also being of secondary importance, while flagellates dominated at the DCM. A few shelf stations, and frontal and shelf stations close to the shelf, displayed high TChla and diatom domination, particularly at the DCM. Absorption properties and photopigment indices revealed that prokaryote dominated communities had high chlorophyll-specific absorption coefficients, a large range in the proportion of TChla within the total pigment pool and a high proportion of photoprotective carotenoids. Diatoms had low chlorophyll-specific absorption, a relatively high proportion of TChla, and elevated proportions of photosynthetic carotenoids and chlorophyll c. Flagellate dominated communities had intermediate chlorophyll-specific absorption, a lower proportion of TChla, elevated photosynthetic carotenoids and intermediate chlorophyll c.

Phytoplankton absorption, pigments and active fluorescence were investigated at five focus sites in a shelf region during summer and winter to elucidate the adaptation of communities to changing environmental conditions. We determined that the availability of nutrients and changing irradiance were the key drivers of phytoplankton growth and photoacclimation in an ecosystem influenced by a warm western boundary current. Diatoms dominated the communities in the winter, while mixed diatom-flagellate populations generally prevailed in summer. Prokaryotes were dominant in the surface layer at one site where warm water flowed onto the shelf. Diatom and flagellate communities were associated with cooler, lower salinity water and prokaryotes with warm, higher salinity water. Populations appeared not be nutrient stressed and actively drew down silicates and nitrates, with nitrates being rapidly utilized resulting in low ambient nitrate levels in the upper water column. The phytoplankton acclimated to changing irradiance conditions by increasing the quantum yield of photochemistry with decreasing irradiance and adjusting the absorption of light by accessory pigments. Prokaryote dominated communities had high chlorophyll-specific absorption coefficients, and a high proportion of spectral absorption by chlorophyll a and photoprotective carotenoids. Diatoms had low chlorophyll-specific absorption and elevated absorption by photosynthetic carotenoids and chlorophyll c. Although flagellate-dominated communities had intermediate chlorophyll-specific absorption, their proportion of absorption by photosynthetic carotenoids and chlorophyll c was similar to the diatoms.

Phytoplankton absorption and pigment characteristics of a red tide were investigated in coastal waters of the southern Benguela. Diagnostic indices indicated that dinoflagellates were the dominant phytoplankton group, with diatoms and small flagellates being of secondary importance. Very high biomass was observed close to the coast where chlorophyll a concentrations of up to 117 mg m–3 were measured. Both measured (aph) and reconstructed pigment absorption (apig) displayed an increasing trend with chlorophyll a, while the package effect index (Qa*) decreased, indicating increased packaging with an increase in biomass. Proportioning of the total pigment absorption between 400 and 700 nm revealed that chlorophyll a accounted for 39–65% of the absorption, while photosynthetic carotenoids (15–30%) and chlorophyll cs (15–30%) were also prominent in absorbing light for photosynthesis.Keywords: absorption, phytoplankton, pigments, red tideAfrican Journal of Marine Science 2012, 34(2): 241–248

Error-quantified, synoptic-scale relationships between chlorophyll-a (Chl-a) and phytoplankton pigment groups at the sea surface are presented. A total of ten pigment groups were considered to represent three Phytoplankton Size Classes (PSCs, micro-, nano- and picoplankton) and seven Phytoplankton Functional Types (PFTs, i.e. diatoms, dinoflagellates, green algae, prymnesiophytes (haptophytes), pico-eukaryotes, prokaryotes and Prochlorococcus sp.). The observed relationships between Chl-a and PSCs/PFTs were well-defined at the global scale to show that a community shift of phytoplankton at the basin and global scales is reflected by a change in Chl-a of the total community. Thus, Chl-a of the total community can be used as an index of not only phytoplankton biomass but also of their community structure. Within these relationships, we also found non-monotonic variations with Chl-a for certain pico-sized phytoplankton (pico-eukaryotes, Prokaryotes and Prochlorococcus sp.) and nano-sized phytoplankton (Green algae, prymnesiophytes). The relationships were quantified with a least-square fitting approach in order to enable an estimation of the PFTs from Chl-a where PFTs are expressed as a percentage of the total Chl-a. The estimated uncertainty of the relationships depends on both PFT and Chl-a concentration. Maximum uncertainty of 31.8% was found for diatoms at Chl-a = 0.49 mg m−3. However, the mean uncertainty of the relationships over all PFTs was 5.9% over the entire Chl-a range observed in situ (0.02 < Chl-a < 4.26 mg m−3). The relationships were applied to SeaWiFS satellite Chl-a data from 1998 to 2009 to show the global climatological fields of the surface distribution of PFTs. Results show that microplankton are present in the mid and high latitudes, constituting only ~10.9% of the entire phytoplankton community in the mean field for 1998–2009, in which diatoms explain ~7.5%. Nanoplankton are ubiquitous throughout the global surface oceans, except the subtropical gyres, constituting ~45.5%, of which prymnesiophytes (haptophytes) are the major group explaining ~31.7% while green algae contribute ~13.9%. Picoplankton are dominant in the subtropical gyres, but constitute ~43.6% globally, of which prokaryotes are the major group explaining ~26.5% (Prochlorococcus sp. explaining 22.8%), while pico-eukaryotes explain ~17.2% and are relatively abundant in the South Pacific. These results may be of use to evaluate global marine ecosystem models.

An investigation of phytoplankton production and physiology was undertaken during two research cruises on the southeastern shelf of southern Africa. The data set included photosynthesis-irradiance and active fluorescence parameters, phytoplankton absorption coefficients and HPLC pigment concentrations. Primary production was estimated to vary over a similar range for both cruises within 0.27–3.69 g C m−2 d−1. Pigment indices indicated that diatoms were dominant on the first cruise and the communities were subject to conditions where the mixed layer was deeper than the euphotic zone and they optimized their photosynthesis to very low light intensities at the bottom and below the euphotic zone. Mixed diatom-flagellate populations were observed during the second cruise where the euphotic zone was deeper than the mixed layer and the populations adapted to irradiances higher in the euphotic zone. In response to a mean lower water column PAR, it was found that these mixed communities increased the proportion of chlorophyll a in the pigment pool and had a higher quantum yield of photochemistry and higher light-limited photosynthetic efficiency.

We derived size-specific photosynthetic rates for eastern boundary upwelling regions using satellite ocean colour, by a simple approach that links photosynthetic rate to phytoplankton size classes with the optical absorption of phytoplankton. Comparisons with a conventional chlorophyll-based photosynthetic algorithm and with in situ measurements showed good agreement with our approach ( r 2 = 0.728, p

The phytoplankton pigment composition (chlorophylls and carotenoids) from 17 Atlantic Meridional Transect (AMT) cruises over the period 1995–2005 was analysed to determine the distributions of pigments and plankton in the Atlantic Ocean between 50°N and 50°S. Data were quality assured by statistical methods, including regression of total chlorophyll a (TChla) versus accessory pigments (AP) and comparison of the AMT-TChla with contemporary SeaWiFS-TChla (cruises AMT-05 to -17). Comparisons of province-mean TChla (±SD) for in situ and satellite data showed good agreement for each cruise. ‘Taxa-specific’ pigments were used to define phytoplankton functional types (PFTs) for each of the biogeochemical provinces along the AMT. Pigment ratios (e.g. TChla/AP) were analysed for each cruise and for each province as indices (characteristic properties) of particular PFTs. Mostly robust positive correlations were observed between TChla and pigment ratios for different PFTs, for some provinces and most cruises. These were consistent with previous observations. Generally there were no significant trends of mean TChla or pigment ratios within provinces over the period 1995–2005, although the previously reported perturbation due to the 1997–1998 ENSO was evident.

Phytoplankton production was investigated throughout the whole Benguela ecosystem in winter 1999 and in summer 2002 during two four-week research cruises from Cape Town, South Africa, through Namibian waters to Namibe in southern Angola. Primary production ranged from 0.14–2.26 g C m−2 d−1 during June–July 1999 and from 0.39–8.83 g C m−2 d−1 during February–March 2002. Mean productivity values indicated that the Benguela ecosystem was twice as productive in summer than in winter. In 1999, most of the productivity occurred within a temperature range of 13.5–18 °C, whereas in 2002 elevated production was associated with temperatures of 14–22 °C. The relationship between primary production and chlorophyll a was good for winter 1999 but poor for summer 2002, suggesting that predicting primary production from chlorophyll a is not straightforward for the Benguela ecosystem.

An investigation of pigments, phytoplankton types and absorption characteristics was conducted in the Delagoa and Natal Bights during late winter and spring in the southwest Indian Ocean. The study demonstrated that small flagellates dominated the phytoplankton communities in both bights and were ubiquitous across a temperature range of 18–24 °C. Diatoms were dominant in patches of cool water ( 22 °C. Absorption coefficients varied closely with variations in chlorophyll a and specific coefficients were lower for diatoms compared to flagellates. Chlorophyll-specific coefficients also provided useful information on the level of pigment packaging and were related to the proportion of chlorophylls and carotenoids in the pigment pool.

Pigment indices were used to characterise the seasonal succession of phytoplankton, and associated changes in chlorophyll a and accessory pigments, in subtropical waters of the three ocean basins in the southern hemisphere. Diagnostic indices revealed the dominance of small flagellates and elevated biomass during winter–spring in the Pacific, mixed flagellate–prokaryote communities and intermediate biomass during early summer in the Atlantic, and prokaryote dominance with low biomass in mid-summer in the Indian Ocean. Photo-pigment indices indicated only a small variation in the chlorophyll a proportion of total pigments across the ocean basins, but the accessory pigments varied considerably. Under low temperature and irradiance conditions, the photosynthetic carotenoids were prominent, but as temperatures and irradiance increased and nutrients declined, there was a significant increase in the proportion of photoprotective carotenoids. At high temperatures and irradiances, the photoprotective carotenoids were the largest component of the pigment pool, exceeding the proportion of chlorophyll a . These variations in phytoplankton composition, and their photoacclimation status, could be explained according to environmental changes and have implications for satellite estimations of biomass and primary production.

A non-linear model that uses satellite-derived chlorophyll to estimate water-column primary production was developed and tested using data from the Delagoa Bight, where the model results compared well with local estimates. The data were also used to assess variations in phytoplankton biomass and daily water-column primary production (PZT ;m g Cm � 2 day � 1 ), in relation to physico-chemical variables. The distribution of phytoplankton biomass and primary production was partly influenced by gyre circulation and other water flow in the Bight, such as eddies, eastern Madagascar current and the Agulhas current. The locally-developed model could be applied throughout the region to estimate primary production. For low biomass (

The distributions of monomethylamine (MMA), dimethylamine (DMA), trimethylamine (TMA) and ammonium (NH+4) were investigated in the Arabian Sea. The data set presented is the first to describe the distribution of MAs on an oceanic scale. Throughout the region concentrations of NH+4 were up to two orders of magnitude greater than those of the MAs. MMA (0–66 nM) was generally the most abundant MA, whilst TMA was only found at concentrations

2004 ENVISAT Symposium, Salzburg, AUSTRIA, SEP, 2004; We measured water leaving reflectance, phytoplankton pigments, optical properties and photosynthetic parameters in the southern Benguela ecosystem in October 2002. These data were used to validate MERIS standard products: reflectance (MERIS wavelengths) and Case 1 Chlorophyll- a. In this heterogeneous area, accurate validation required sampling within a few minutes of the satellite overpass. Inter-pigment relationships e. g. Total Chlorophyll (TChla) to Total Pigment (TP) were robust (R-2 similar to 0.99) yet pigment ratios (TChla/TP) were not constant (range 0.44 to 0.62) increasing log-linearly with biomass (R-2 similar to 0.7). Photosynthetic parameters (e. g. Photosynthetic Quantum Efficiency, PQE) and optical ratios (a(676)/a(440)) also increased log-linearly with biomass (R-2 similar to 0.8). PQE, pigment and optical ratios were linearly inter-correlated (R-2 similar to 0.7 to 0.8). From these data we derived the bio-optical traits for several phytoplankton functional types (PFTs): micro-plankton (diatoms and dinoflagellates) had high biomass, pigment ratios and PQE; nano-flagellates had low to intermediate biomass, pigment ratios and PQE; prokaryotes had very low biomass, pigment ratios and PQE. We present MERIS data analysed for PFTs and new products (PQE).

International audience; Whether for biogeochemical studies or ocean color validation activities, high-performance liquid chromatography (HPLC) is an established reference technique for the analysis of chlorophyll a and associated phytoplankton pigments. The results of an intercomparison exercise of HPLC pigment determination, performed for the first time on natural samples and involving four laboratories (each using a different HPLC procedure), are used to address three main objectives: (a) estimate (and explain) the level of agreement or discrepancy in the methods used, (b) establish whether or not the accuracy requirements for ocean color validation activities can be met, and (c) establish how higher order associations in individual pigments (i.e., sums and ratios) influence the uncertainty budget while also determining how this information can be used to minimize the variance within larger pigment databases. The round-robin test samples (11 different samples received in duplicate by each laboratory) covered a range of total chlorophyll a concentration, [TChl a], representative of open ocean conditions from 0.045 mg m(-3), typical of the highly oligotrophic surface waters of the Ionian Sea, to 2.2 mg m(-3), characteristic of the upwelling regime off Morocco. Despite the diversity in trophic conditions and HPLC methods, the agreement between laboratories, defined here as the absolute percent difference (APD), was approximately 7.0% for [TChl a], which is well within the 25% accuracy objective for remote sensing validation purposes. For other pigments (mainly chemotaxinomic carotenoids), the agreement between methods was 21.5% on average (ranging from 11.5% for fucoxanthin to 32.5% for peridinin), and inversely depended on pigment concentration (with large disagreements for pigments close to the detection limits). It is shown that better agreement between methods can be achieved if some simple procedures are employed: (a) disregarding results less than the effective limit of quantitation (LOQ, an alternative to the method detection limit, MDL), (b) standardizing the manner in which the concentration of pigment standards are determined, and (c) accurately accounting for divinyl chlorophyll a when computing [TChl a] for those methods which do not chromatographically separate it from monovinyl chlorophyll a. The use of these quality-assurance procedures improved the agreement between methods, with average APD values dropping from 7.0% to 5.5% for [TChl a] and from 21.5% to 13.9% for the principal carotenoids. Additionally, it is shown that subsequent grouping of individual pigment concentrations into sums and ratios significantly reduced the variance and, thus, improved the agreement between laboratories. This grouping, therefore, provides a simple mechanism for decreasing the variance within databases composed of merged data from different origins. Among the recommendations for improving database consistency in the future, it is suggested that submissions to a database should include the relevant information related to the limit of detection for the HPLC method. (C) 2003 Elsevier B.V. All rights reserved.