11 results on '"Nima Sayyadi"'
Search Results
2. Chemoenzymatic glycan labelling as a platform for site-specific IgM-antibody drug conjugates
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Nima Sayyadi, Edward S. X. Moh, and Nicolle H. Packer
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Azides ,Antibody-drug conjugate ,Glycan ,Biochemistry & Molecular Biology ,Immunoconjugates ,Glycosylation ,Sialyltransferase ,Biophysics ,01 natural sciences ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Polysaccharides ,Humans ,Amino Acid Sequence ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,biology ,010401 analytical chemistry ,Cell Biology ,0104 chemical sciences ,3. Good health ,Immunoglobulin M ,chemistry ,Alkynes ,biology.protein ,Click chemistry ,Click Chemistry ,Azide ,Antibody - Abstract
© 2019 Immunoglobulin M (IgM) type antibodies play a significant role in complement activation, cellular debris clearance and cell quality control, and have the potential to be used as a therapeutic or targeting/delivery antibody. However, this potential has not been explored thoroughly due to its high molecular weight, polymeric structure and large number of glycosylation sites. Site-specific antibody-drug-conjugates (ADC) are considered the next generation protein biotherapeutic drugs and currently all, in clinical trials and approved, are of the IgG isotype. As existing methods for the development and characterization of IgG-ADCs are not compatible with IgM-ADC, we describe a platform methodology suitable for site specific IgM-ADC using a chemoenzymatic method targeting the glycans on the IgM. Azide functionalized sialic acids were incorporated onto IgM glycans using sialyltransferase for biocompatible conjugation using “click” chemistry. The number of azide groups incorporated onto the IgM glycans were characterized by mass spectrometry of the enzymatically released glycans and glycopeptides. Quantitation of the azide incorporation showed an azide antibody ratio of 8 (glycan data) and 6–10 (glycopeptide data) which translates to a high drug antibody ratio based on IgG-ADC standards. This platform methodology can be readily adapted for any human IgM produced in a mammalian cell expression system.
- Published
- 2019
3. Time-Gated Luminescent In Situ Hybridization (LISH): Highly Sensitive Detection of Pathogenic Staphylococcus aureus
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Nicolle H. Packer, Jingli Yuan, Nima Sayyadi, Tom Lawson, Russell Connally, and James A. Piper
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Streptavidin ,Staphylococcus aureus ,Luminescence ,Fluorophore ,Pharmaceutical Science ,medicine.disease_cause ,Article ,Analytical Chemistry ,lcsh:QD241-441 ,03 medical and health sciences ,chemistry.chemical_compound ,lcsh:Organic chemistry ,RNA, Ribosomal, 16S ,Drug Discovery ,medicine ,Humans ,TEGylated Europium chelate ,time-gated luminescent microscopy ,Physical and Theoretical Chemistry ,Bovine serum albumin ,Chromatography, High Pressure Liquid ,In Situ Hybridization ,030304 developmental biology ,Alexa Fluor ,0303 health sciences ,biology ,030306 microbiology ,Chemistry ,Staphylococcus aureus (S. aureus) detection ,Organic Chemistry ,Staphylococcal Infections ,Fluorescence ,Chemistry (miscellaneous) ,Biotinylation ,Luminescent Measurements ,Biophysics ,biology.protein ,Molecular Medicine ,Oligomer restriction ,homogeneous luminescent in situ hybridisation - Abstract
We describe simple direct conjugation of a single TEGylated Europium chelate to DNA that binds to intracellular rRNA and is then detected using a homogeneous luminescent in situ hybridisation (LISH) technique. As a proof-of-principle, Staphylococcus aureus (S. aureus) was selected as a model for our study to show the ability of this probe to bind to intracellular 16S ribosomal rRNA. A highly purified Europium chelate conjugated oligonucleotide probe complementary to an rRNA sequence-specific S. aureus was prepared and found to be soluble and stable in aqueous solution. The probe was able to bind specifically to S. aureus via in situ hybridisation to differentiate S. aureus from a closely related but less pathogenic Staphylococcus species (S. epidermidis). A time-gated luminescent (TGL) microscope system was used to generate the high signal-to-noise ratio (SNR) images of the S. aureus. After excitation (365 nm, Chelate &lambda, max = 335 nm), the long-lived (Eu3+) luminescent emission from the probe was detected without interference from natural background autofluorescence typically seen in biological samples. The luminescent images were found to have 6 times higher SNR or sensitivity compared to the fluorescent images using conventional fluorophore Alexa Fluor 488. The TEGylated Europium chelate -oligo probe stained S. aureus with mean signal intensity 3.5 times higher than the threshold level of signal from S. epidermidis (with SNR 8 times higher). A positive control probe (EUB338&ndash, BHHTEGST&ndash, Eu3+) has mean signal intensity for S. aureus and S. epidermidis equally 3.2 times higher than the threshold of signal for a negative NON-EUB338 control probe. The direct conjugation of a single Europium chelate to DNA provides simplicity and improvement over existing bovine serum albumin (BSA)/streptavidin/biotinylated DNA platforms for multi-attachment of Europium chelate per DNA and more importantly makes it feasible for hybridisation to intracellular RNA targets. This probe has great potential for highly sensitive homogeneous in situ hybridisation detection of the vast range of intracellular DNA targets.
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- 2019
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4. Lipopolysaccharide and Morphine-3-Glucuronide-Induced Immune Signalling Increases the Expression of Polysialic Acid in PC12 Cells
- Author
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Mark R. Hutchinson, Sameera Iqbal, Lindsay M. Parker, Arun V. Everest-Dass, Edward S. X. Moh, Nima Sayyadi, and Nicolle H. Packer
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0301 basic medicine ,Central Nervous System ,Lipopolysaccharides ,Lipopolysaccharide ,medicine.medical_treatment ,Neuroscience (miscellaneous) ,Neuraminidase ,Stimulation ,PC12 Cells ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,0302 clinical medicine ,Immune system ,Cell Movement ,medicine ,Animals ,Morphine Derivatives ,Polysialic acid ,Neurogenesis ,Cell migration ,Cell Differentiation ,Cell biology ,Rats ,030104 developmental biology ,Cytokine ,Neurology ,chemistry ,TLR4 ,Sialic Acids ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
Polysialic acid (polySia), a long homopolymer of 2,8-linked sialic acids, is abundant in the embryonic brain and is restricted largely in adult brain to regions that exhibit neurogenesis and structural plasticity. In the central nervous system (CNS), polySia is highly important for cell-cell interactions, differentiation, migration and cytokine responses, which are critical neuronal functions regulating intercellular interactions that underlie immune signalling in the CNS. In recent reports, a metabolite of morphine, morphine-3-glucuronide (M3G), has been shown to cause immune signalling in the CNS. In this study, we compared the effects of neurite growth factor (NGF), lipopolysaccharide (LPS) and M3G exposure on the expression of polySia in PC12 cells using immunocytochemistry and Western blot analysis. PolySia was also extracted from stimulated cell proteins by endo-neuraminidase digestion and quantitated using fluorescent labelling followed by HPLC analysis. PolySia expression was significantly increased following NGF, M3G or LPS stimulation when compared with unstimulated cells or cells exposed to the TLR4 antagonist LPS-RS. Additionally, we analyzed the effects of test agent exposure on cell migration and the oxidative stress response of these cells in the presence and absence of polySia expression on their cell surface. We observed an increase in oxidative stress in cells without polySia as well as following M3G or LPS stimulation. Our study provides evidence that polySia expression in neuronal-like PC12 cells is influenced by M3G and LPS exposure alike, suggestive of a role of TLR4 in triggering these events.
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- 2018
5. Investigating the scope of pseudoproline assisted peptide cyclization
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Nima Sayyadi, Katrina A. Jolliffe, Samira Leesch, and Deni Taleski
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chemistry.chemical_classification ,Pseudoproline ,Chemistry ,Organic Chemistry ,Peptide ,Biochemistry ,Combinatorial chemistry ,Cyclic peptide ,Amino acid ,Serine ,Turn (biochemistry) ,chemistry.chemical_compound ,Yield (chemistry) ,Drug Discovery ,Threonine - Abstract
The cyclization of linear peptides from six to nine amino acids in length and containing between two and four pseudoproline turn inducers derived from serine or threonine was investigated to determine the effect of peptide length, amino acid composition and spacing between the pseudoproline residues on macrocyclization yield.
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- 2014
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6. Sensitive Time-Gated Immunoluminescence Detection of Prostate Cancer Cells Using a TEGylated Europium Ligand
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Run Zhang, James A. Piper, Nima Sayyadi, Jingli Yuan, Robert D. Willows, Arun V. Everest-Dass, Dayong Jin, Russell Connally, Liisa Kautto, Bingyang Shi, Bradley J. Walsh, Nicolle H. Packer, and Irene Justiniano
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0301 basic medicine ,Streptavidin ,Male ,Immunoconjugates ,Luminescence ,chemistry.chemical_element ,Ligands ,Analytical Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Biotin ,DU145 ,Europium ,Glypicans ,Coordination Complexes ,Cell Line, Tumor ,Humans ,Luminescent Agents ,biology ,Chemistry ,Antibodies, Monoclonal ,Prostatic Neoplasms ,Molecular biology ,3. Good health ,Autofluorescence ,030104 developmental biology ,Polyclonal antibodies ,030220 oncology & carcinogenesis ,Cancer cell ,biology.protein ,Immunologic Techniques ,Antibody - Abstract
We describe the application of a synthetically developed tetradentate β-diketonate-europium chelate with high quantum yield (39%), for sensitive immunodetection of prostate cancer cells (DU145). MIL38 antibody, a mouse monoclonal antibody against Glypican 1, conjugated directly to the chelate via lysine residues, resulted in soluble (hydrophilic) and stable immunoconjugates. Indirect labeling of the antibody by a europium chelated secondary polyclonal antibody and a streptavidin/biotin pair was also performed. All of these bright luminescent conjugates were used to stain DU145 cells, a prostate cancer cell line, using time gated luminescence microscopy for imaging, and their performances were compared to conventional FITC labeling. For all prepared conjugates, the europium chelate in conjunction with a gated autosynchronous luminescence detector (GALD) completely suppressed the cellular autofluorescence background to allow capture of vivid, high contrast images of immune-stained cancer cells.
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- 2016
7. Fluorescent nanodiamond and lanthanide labelled in situ hybridization for the identification of RNA transcripts in fixed and CLARITY-cleared central nervous system tissues (Conference Presentation)
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Nima Sayyadi, Vicky Staikopoulos, Nicolle H. Packer, Nicole M. Cordina, Lindsay M. Parker, and Mark R. Hutchinson
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Autofluorescence ,chemistry.chemical_compound ,Messenger RNA ,Fluorophore ,Biochemistry ,Chemistry ,RNA ,Nanotechnology ,In situ hybridization ,Fluorescein ,Fluorescence ,Photobleaching - Abstract
Despite significant advancement in the methodology used to conjugate, incorporate and visualize fluorescent molecules at the cellular and tissue levels, biomedical imaging predominantly relies on the limitations of established fluorescent molecules such as fluorescein, cyanine and AlexaFluor dyes or genetic incorporation of fluorescent proteins by viral or other means. These fluorescent dyes and conjugates are highly susceptible to photobleaching and compete with cellular autofluorescence, making biomedical imaging unreliable, difficult and time consuming in many cases. In addition, some proteins have low copy numbers and/or poor antibody recognition, further making detection and imaging difficult. We are developing better methods for imaging central nervous system neuroinflammatory markers using targeted mRNA transcripts labelled with fluorescent nanodiamonds or lanthanide chelates. These tags have increased signal and photostability and can also discriminate against tissue/cell autofluorescence. Brains and spinal cords from BALB/c mice with a chronic constriction model of neuropathic pain (neuroinflammation group) or that have undergone sham surgeries (control group) were collected. A subset of brains and spinal cords were perfused and fixed with paraformaldehyde (n=3 sham and n=3 pain groups) prior to sectioning and in situ hybridization using nanodiamond or lanthanide chelate conjugated complementary RNA probes. Another subset of brains and spinal cords from the same cohort of animals were perfused and processed for CLARITY hydrogel based clearing prior to in situ hybridization with the same probes. We will present our findings on the photostability, sensitivity and discrimination from background tissue autofluorescence of our novel RNA probes, compared to traditional fluorophore tags.
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- 2016
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8. Synthesis of All-<scp>l</scp> Cyclic Tetrapeptides Using Pseudoprolines as Removable Turn Inducers
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Katrina A. Jolliffe, Jack K. Clegg, Nima Sayyadi, Ian J. Luck, and Kelly A. Fairweather
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Models, Molecular ,Pseudoproline ,Proline ,Stereochemistry ,Organic Chemistry ,Molecular Conformation ,Stereoisomerism ,Peptides, Cyclic ,Biochemistry ,Combinatorial chemistry ,Serine ,Turn (biochemistry) ,Thiazoles ,chemistry.chemical_compound ,chemistry ,Peptide synthesis ,Peptide bond ,Inducer ,Physical and Theoretical Chemistry ,Threonine ,Oligopeptides - Abstract
Cyclic tetrapeptides have generated great interest because of their broad-ranging biological properties. In order to synthesize these highly strained 12-membered cyclic compounds, a cyclization strategy using pseudoprolines as removable turn inducers has been developed. The pseudoproline derivatives induce a cisoid amide bond in the linear peptide backbone which facilitates cyclization. After cyclization, the turn inducers can be readily removed to afford cyclic tetrapeptides containing serine or threonine residues.
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- 2010
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9. Synthesis of the cyclic heptapeptide axinellin A
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Kelly A. Fairweather, Katrina A. Jolliffe, Nima Sayyadi, and Christos Roussakis
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chemistry.chemical_classification ,Natural product ,Pseudoproline ,Stereochemistry ,Natural compound ,Organic Chemistry ,Peptide ,Biochemistry ,Chemical synthesis ,Combinatorial chemistry ,Cyclic peptide ,chemistry.chemical_compound ,Residue (chemistry) ,chemistry ,Drug Discovery ,Cytotoxicity - Abstract
The first synthesis of the naturally occurring cyclic peptide axinellin A has been achieved. Cyclization and subsequent deprotection of linear precursors containing either a t-butyl protected Thr residue or a Thr(ΨMe,Mepro) derivative gave a cyclic peptide, identical in all respects to the naturally occurring material, with the exception that the synthetic peptide does not exhibit the cytotoxic activity reported for the natural product.
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- 2010
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10. A novel biocompatible europium ligand for sensitive time-gated immunodetection
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Nima Sayyadi, Russell Connally, and Andrew C. Try
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Analytical chemistry ,chemistry.chemical_element ,Biocompatible Materials ,02 engineering and technology ,010402 general chemistry ,Ligands ,01 natural sciences ,Catalysis ,chemistry.chemical_compound ,Europium ,Limit of Detection ,Materials Chemistry ,Ligand ,Metals and Alloys ,General Chemistry ,021001 nanoscience & nanotechnology ,Biocompatible material ,Combinatorial chemistry ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Immunoconjugate ,chemistry ,Ceramics and Composites ,0210 nano-technology ,Luminescence ,Derivative (chemistry) - Abstract
We describe the synthesis of a novel hydrophilic derivative of a tetradentate β-diketone europium ligand that was used to prepare an immunoconjugate probe against Giardia lamblia cysts. We used a Gated Autosynchronous Luminescence Detector (GALD) to obtain high quality delayed luminescence images of cells 30-fold faster than ever previously reported.
- Published
- 2015
11. Solid-State and Solution-Phase Conformations of Pseudoproline-Containing Dipeptides
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Danielle Skropeta, Katrina A. Jolliffe, Peter Turner, Nima Sayyadi, Jack K. Clegg, and James R. Cochrane
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chemistry.chemical_classification ,chemistry.chemical_compound ,Residue (chemistry) ,Pseudoproline ,chemistry ,Stereochemistry ,Side chain ,Peptide synthesis ,Peptide bond ,Peptide ,General Chemistry ,Conformational isomerism ,Amino acid - Abstract
The conformations of 14 threonine-derived pseudoproline-containing dipeptides (including four d-allo-Thr derivatives) have been investigated by NMR. In solution, the major conformer observed for all dipeptides is that in which the amide bond between the pseudoproline and the preceding amino acid is cis. For dipeptides in which the N-terminus is protected, the ratio of cis- to trans-conformers does not depend significantly on the side chain of the N-terminal amino acid, or the stereochemistry of the Thr residue. However, for dipeptides bearing a free N-terminus, there are significant differences in the ratios of cis- to trans-conformers depending on the side chain present. Three dipeptides were crystallized and their X-ray structures determined. In two cases, (benzyloxycarbonyl (Cbz)-Val-Thr(ΨMe,Mepro)-OMe and Cbz-Val-Thr(ΨMe,Mepro)-OH), the dipeptides adopt a trans-conformation in the solid state, in contrast to the structures observed in solution. In the third case, (9-fluorenylmethoxycarbonyl (Fmoc)-Val-d-allo-Thr(ΨMe,Mepro)-OH), a cis-amide geometry is observed. These structural differences are attributed to crystal-packing interactions.
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- 2009
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