1. Potent Inhibitors of Subgenomic Hepatitis C Virus RNA Replication through Optimization of Indole-N-Acetamide Allosteric Inhibitors of the Viral NS5B Polymerase
- Author
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Marcello Di Filippo, Licia Tomei, Giovanni Migliaccio, Giacomo Paonessa, Julio Padron, Ralph Laufer, Steven Harper, Frank Narjes, Barbara Pacini, Fabio Bonelli, Salvatore Avolio, Andrea Carfi, Raffaele De Francesco, Michael Rowley, Sergio Altamura, Claudio Giuliano, and Stefania Di Marco
- Subjects
Models, Molecular ,Receptors, Steroid ,Indoles ,Hepatitis C virus ,Allosteric regulation ,Biological Availability ,Receptors, Cytoplasmic and Nuclear ,Genome, Viral ,Hepacivirus ,Viral Nonstructural Proteins ,medicine.disease_cause ,Antiviral Agents ,Virus ,Rats, Sprague-Dawley ,Structure-Activity Relationship ,chemistry.chemical_compound ,Dogs ,Allosteric Regulation ,Cell Line, Tumor ,Acetamides ,Drug Discovery ,medicine ,Animals ,Humans ,Tissue Distribution ,NS5B ,Subgenomic mRNA ,chemistry.chemical_classification ,Pregnane X receptor ,Pregnane X Receptor ,RNA ,RNA-Dependent RNA Polymerase ,Virology ,digestive system diseases ,Rats ,Enzyme ,chemistry ,RNA, Viral ,Molecular Medicine ,Half-Life - Abstract
Infections caused by hepatitis C virus (HCV) are a significant world health problem for which novel therapies are in urgent demand. Compounds that block replication of subgenomic HCV RNA in liver cells are of interest because of their demonstrated antiviral effect in the clinic. In followup to our recent report that indole-N-acetamides (e.g., 1) are potent allosteric inhibitors of the HCV NS5B polymerase enzyme, we describe here their optimization as cell-based inhibitors. The crystal structure of 1 bound to NS5B was a guide in the design of a two-dimensional compound array that highlighted that formally zwitterionic inhibitors have strong intracellular potency and that pregnane X receptor (PXR) activation (an undesired off-target activity) is linked to a structural feature of the inhibitor. Optimized analogues devoid of PXR activation (e.g., 55, EC(50) = 127 nM) retain strong cell-based efficacy under high serum conditions and show acceptable pharmacokinetics parameters in rat and dog.
- Published
- 2005
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