28 results on '"Frank W. Foss"'
Search Results
2. Flavin Nitroalkane Oxidase Mimics Compatibility with NOx/TEMPO Catalysis: Aerobic Oxidization of Alcohols, Diols, and Ethers
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Thanh Thuy Vuong, Frank W. Foss, Shan Hazoor, P. Thapa, and Bikash Chouhan
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inorganic chemicals ,biology ,010405 organic chemistry ,Organic Chemistry ,Formaldehyde ,Flavoprotein ,Sulfoxide ,Flavin group ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Catalysis ,chemistry.chemical_compound ,chemistry ,Nitroalkane oxidase ,biology.protein ,Organic chemistry ,Selectivity ,NOx - Abstract
Biomimetic flavin organocatalysts oxidize nitromethane to formaldehyde and NOx-providing a relatively nontoxic, noncaustic, and inexpensive source for catalytic NO2 for aerobic TEMPO oxidations of alcohols, diols, and ethers. Alcohols were oxidized to aldehydes or ketones, cyclic ethers to esters, and terminal diols to lactones. In situ trapping of NOx and formaldehyde suggest an oxidative Nef process reminiscent of flavoprotein nitroalkane oxidase reactivity, which is achieved by relatively stable 1,10-bridged flavins. The metal-free flavin/NOx/TEMPO catalytic cycles are uniquely compatible, especially compared to other Nef and NOx-generating processes, and reveal selectivity over flavin-catalyzed sulfoxide formation. Aliphatic ethers were oxidized by this method, as demonstrated by the conversion of (-)-ambroxide to (+)-sclareolide.
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- 2020
3. 1,2-Disubstituted Benzimidazoles by the Iron Catalyzed Cross-Dehydrogenative Coupling of Isomeric o-Phenylenediamine Substrates
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Tam Tran, Brad S. Pierce, Frank W. Foss, P. Thapa, and Philip M. Palacios
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Benzimidazole ,010405 organic chemistry ,Organic Chemistry ,Intermolecular force ,Aromatization ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,0104 chemical sciences ,law.invention ,Catalysis ,chemistry.chemical_compound ,chemistry ,law ,o-Phenylenediamine ,Reagent ,Oxidative coupling of methane ,Electron paramagnetic resonance - Abstract
Benzimidazoles are common in nature, medicines, and materials. Numerous strategies for preparing 2-arylbenzimidazoles exist. In this work, 1,2-disubstituted benzimidazoles were prepared from various mono- and disubstituted ortho-phenylenediamines (OPD) by iron-catalyzed oxidative coupling. Specifically, O2 and FeCl3·6H2O catalyzed the cross-dehydrogenative coupling and aromatization of diarylmethyl and dialkyl benzimidazole precursors. N,N'-Disubstituted-OPD substrates were significantly more reactive than their N,N-disubstituted isomers, which appears to be relative to their propensity for complexation and charge transfer with Fe3+. The reaction also converted N-monosubstituted OPD substrates to 2-substituted benzimidazoles; however, electron-poor substrates produce 1,2-disubstituted benzimidazoles by intermolecular imino-transfer. Kinetic, reagent, and spectroscopic (UV-vis and EPR) studies suggest a mechanism involving metal-substrate complexation, charge transfer, and aerobic turnover, involving high-valent Fe(IV) intermediates. Overall, comparative strategies for the relatively sustainable and efficient synthesis of 1,2-disubstituted benzimidazoles are demonstrated.
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- 2020
4. Isoindolinone Synthesis: Selective Dioxane-Mediated Aerobic Oxidation of Isoindolines
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Sinjinee Sardar, Esai Corral, Frank W. Foss, P. Thapa, and Brad S. Pierce
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inorganic chemicals ,010405 organic chemistry ,Organic Chemistry ,Late stage ,Indoprofen ,Isoindoline ,010402 general chemistry ,01 natural sciences ,Combinatorial chemistry ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,medicine ,Chemoselectivity ,medicine.drug - Abstract
N-Alkyl and N-aryl-isoindolinones were prepared by a dioxane-mediated oxidation of isoindoline precursors. The transformation exhibits unique chemoselectivity for isoindonlines. A chiral tertiary (3°)-benzylic position was not racemized during oxidation, and methyl indoprofen was prepared by late stage oxidation. Mechanistic studies suggest a selective H atom transfer, which avoids many known oxidation (by-)products of isoindolinones.
- Published
- 2018
5. Barium Selective Chemosensing by Diazacrown Ether Naphthalimide Turn-on Fluorophores for Single Ion Barium Tagging
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A.D. McDonald, D. R. Nygren, A.A. Denisenko, C. Newhouse, Kwangho Nam, Ben Jones, Nick Byrnes, Thanh Thuy Vuong, Frank W. Foss, K. Woodruff, P. Thapa, and James X. Mao
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Materials science ,chemistry.chemical_element ,Barium ,Ether ,Single-molecule experiment ,Fluorescence ,Photoinduced electron transfer ,Ion ,3. Good health ,Turn (biochemistry) ,chemistry.chemical_compound ,chemistry ,Molecule ,Physical chemistry - Abstract
Single molecule fluorescence detection of barium is investigated for enhancing the sensitivity and robustness of a neutrinoless double beta decay ($0\nu\beta\beta$) search in $^{136}$Xe, the discovery of which would alter our understanding of the nature of neutrinos and the early history of the Universe. A key developmental step is the synthesis of barium-selective chemosensors capable of incorporation into ongoing experiments in high-pressure $^{136}$Xe gas. Here we report turn-on fluorescent naphthalimide chemosensors containing monoaza- and diaza-crown ethers as agents for single Ba$^{2+}$ detection. Monoaza-18-crown-6 ether naphthalimide sensors showed sensitivity primarily to Ba$^{2+}$ and Hg$^{2+}$, whereas two diaza-18-crown-6 ether naphthalimides revealed a desirable selectivity toward Ba$^{2+}$. Solution-phase fluorescence and NMR experiments support a photoinduced electron transfer mechanism enabling turn-on fluorescence sensing in the presence of barium ions. Changes in ion-receptor interactions enable effective selectivity between competitive barium, mercury, and potassium ions, with detailed calculations correctly predicting fluorescence responses. With these molecules, dry-phase single Ba$^{2+}$ ion imaging with turn-on fluorescence is realized using oil-free microscopy techniques. This represents a significant advance toward a practical method of single Ba$^{2+}$ detection within large volumes of $^{136}$Xe, plausibly enabling a background-free technique to search for the hypothetical process of $0\nu\beta\beta$.
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- 2020
6. Thiol dioxygenase turnover yields benzothiazole products from 2-mercaptoaniline and O2-dependent oxidation of primary alcohols
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P. Thapa, Sinjinee Sardar, William P. Morrow, Mohammad Shawkat Hossain, Frank W. Foss, and Brad S. Pierce
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0301 basic medicine ,chemistry.chemical_classification ,030102 biochemistry & molecular biology ,biology ,Chemistry ,Stereochemistry ,Reactive intermediate ,Biophysics ,Cysteine dioxygenase ,Substrate (chemistry) ,Sulfinic acid ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Benzothiazole ,Dioxygenase ,Alcohol oxidation ,Thiol ,biology.protein ,Organic chemistry ,Molecular Biology - Abstract
Thiol dioxygenases are non-heme mononuclear iron enzymes that catalyze the O2-dependent oxidation of free thiols (-SH) to produce the corresponding sulfinic acid (-SO2-). Previous chemical rescue studies identified a putative FeIII-O2- intermediate that precedes substrate oxidation in Mus musculus cysteine dioxygenase (Mm CDO). Given that a similar reactive intermediate has been identified in the extradiol dioxygenase 2, 3-HCPD, it is conceivable that these enzymes share other mechanistic features with regard to substrate oxidation. To explore this possibility, enzymatic reactions with Mm CDO (as well as the bacterial 3-mercaptopropionic acid dioxygenase, Av MDO) were performed using a substrate analogue (2-mercaptoaniline, 2ma). This aromatic thiol closely approximates the catecholic substrate of homoprotocatechuate of 2, 3-HPCD while maintaining the 2-carbon thiol-amine separation preferred by Mm CDO. Remarkably, both enzymes exhibit 2ma-gated O2-consumption; however, none of the expected products for thiol dioxygenase or intra/extradiol dioxygenase reactions were observed. Instead, benzothiazoles are produced by the condensation of 2ma with aldehydes formed by an off-pathway oxidation of primary alcohols added to aqueous reactions to solubilize the substrate. The observed oxidation of 1o-alcohols in 2ma-reactions is consistent with the formation of a high-valent intermediate similar to what has been reported for cytochrome P450 and mononuclear iron model complexes.
- Published
- 2017
7. Enhanced photocatalytic activity of a self-stabilized synthetic flavin anchored on a TiO2 surface
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Krishnan Rajeshwar, Frank W. Foss, Manjula Pandiri, Mohammad Shawkat Hossain, and Yaron Paz
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Reducing agent ,business.industry ,General Physics and Astronomy ,02 engineering and technology ,Flavin group ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Photochemistry ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Semiconductor ,chemistry ,Excited state ,Titanium dioxide ,Photocatalysis ,Molecule ,Physical and Theoretical Chemistry ,0210 nano-technology ,business ,Visible spectrum - Abstract
Synthetic flavin molecules were anchored on Degussa P25 titanium dioxide (TiO2). The effect of their presence on the photocatalytic (PC) activity of TiO2 was studied. Under UV light, an increase in the degradation rate of ethanol was observed. This increase was accompanied by stabilization of the anchored flavin against self-degradation. The unprecedented stabilization effect was found also in the absence of a reducing agent such as ethanol. In contrast, under the less energetic visible light, fast degradation of the anchored flavin was observed. These rather surprising observations were attributed to the propensity for charge transport from excited flavin molecules to the semiconductor and to the role that such charge transfer may play in stabilizing the overall assembly. Anchored flavins excited by UV light to their S2, S3 electronic states were able to transfer the excited electrons to the TiO2 phase whereas anchored flavin molecules that were excited by visible light to the S1 state were less likely to transfer the photo-excited electrons and therefore were destabilized. These findings may be relevant not only to anchored flavins in general but to other functionalized photocatalysts, and may open up new vistas in the implementation of sensitizers in PC systems.
- Published
- 2016
8. Convenient synthesis of deazaflavin cofactor FO and its activity in F420-dependent NADP reductase
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Cuong Q. Le, Ebenezer Joseph, Frank W. Foss, Toan Nguyen, Mohammad Shawkat Hossain, and Kayunta Johnson-Winters
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chemistry.chemical_classification ,Nicotinamide ,biology ,Stereochemistry ,Riboflavin ,Organic Chemistry ,Flavin group ,Reductase ,Biochemistry ,Redox ,Cofactor ,chemistry.chemical_compound ,chemistry ,Oxidoreductase ,biology.protein ,Enzyme kinetics ,NAD+ kinase ,Physical and Theoretical Chemistry ,Oxidoreductases ,NADP - Abstract
F420 and FO are phenolic 5-deazaflavin cofactors that complement nicotinamide and flavin redox coenzymes in biochemical oxidoreductases and photocatalytic systems. Specifically, these 5-deazaflavins lack the single electron reactivity with O2 of riboflavin-derived coenzymes (FMN and FAD), and, in general, have a more negative redox potential than NAD(P)(+). For example, F420-dependent NADP(+) oxidoreductase (Fno) is critical to the conversion of CO2 to CH4 by methanogenic archaea, while FO functions as a light-harvesting agent in DNA repair. The preparation of these cofactors is an obstacle to their use in biochemical studies and biotechnology. Here, a convenient synthesis of FO was achieved by improving the redox stability of synthetic intermediates containing a polar, electron-rich aminophenol fragment. Improved yields and simplified purification techniques for FO are described. Additionally, Fno activity was restored with FO in the absence of F420. Investigating the FO-dependent NADP(+)/NADPH redox process by stopped-flow spectrophotometry, steady state kinetics were defined as having a Km of 4.00 ± 0.39 μM and a kcat of 5.27 ± 0.14 s(-1). The preparation of FO should enable future biochemical studies and novel uses of F420 mimics.
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- 2015
9. Peroxide-Shunt Substrate-Specificity for the Salmonella typhimurium O2-Dependent tRNA Modifying Monooxygenase (MiaE)
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Amanda M. Dark, Bishnu P. Subedi, Frank W. Foss, Andra L. Corder, Siai Zhang, and Brad S. Pierce
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Salmonella typhimurium ,chemistry.chemical_classification ,Stereochemistry ,Electron Spin Resonance Spectroscopy ,Substrate (chemistry) ,Monooxygenase ,Hydroxylation ,Biochemistry ,Mixed Function Oxygenases ,Peroxides ,Substrate Specificity ,Isopentenyladenosine ,Kinetics ,chemistry.chemical_compound ,Enzyme ,Stereospecificity ,Bacterial Proteins ,RNA, Transfer ,chemistry ,Transfer RNA ,Carboxylate ,Nucleoside - Abstract
Post-transcriptional modifications of tRNA are made to structurally diversify tRNA. These modifications alter noncovalent interactions within the ribosomal machinery, resulting in phenotypic changes related to cell metabolism, growth, and virulence. MiaE is a carboxylate bridged, nonheme diiron monooxygenase, which catalyzes the O2-dependent hydroxylation of a hypermodified-tRNA nucleoside at position 37 (2-methylthio-N(6)-isopentenyl-adenosine(37)-tRNA) [designated ms(2)i(6)A37]. In this work, recombinant MiaE was cloned from Salmonella typhimurium , purified to homogeneity, and characterized by UV-visible and dual-mode X-band EPR spectroscopy for comparison to other nonheme diiron enzymes. Additionally, three nucleoside substrate-surrogates (i(6)A, Cl(2)i(6)A, and ms(2)i(6)A) and their corresponding hydroxylated products (io(6)A, Cl(2)io(6)A, and ms(2)io(6)A) were synthesized to investigate the chemo- and stereospecificity of this enzyme. In the absence of the native electron transport chain, the peroxide-shunt was utilized to monitor the rate of substrate hydroxylation. Remarkably, regardless of the substrate (i(6)A, Cl(2)i(6)A, and ms(2)i(6)A) used in peroxide-shunt assays, hydroxylation of the terminal isopentenyl-C4-position was observed with >97% E-stereoselectivity. No other nonspecific hydroxylation products were observed in enzymatic assays. Steady-state kinetic experiments also demonstrate that the initial rate of MiaE hydroxylation is highly influenced by the substituent at the C2-position of the nucleoside base (v0/[E] for ms(2)i(6)A > i(6)A > Cl(2)i(6)A). Indeed, the >3-fold rate enhancement exhibited by MiaE for the hydroxylation of the free ms(2)i(6)A nucleoside relative to i(6)A is consistent with previous whole cell assays reporting the ms(2)io(6)A and io(6)A product distribution within native tRNA-substrates. This observation suggests that the nucleoside C2-substituent is a key point of interaction regulating MiaE substrate specificity.
- Published
- 2013
10. Affinity Mesh Screen Materials for Selective Extraction and Analysis of Antibiotics Using Transmission Mode Desorption Electrospray Ionization Mass Spectrometry
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Sumit Bhawal, Rajendrasing Deshmukh, Kevin A. Schug, John A. Gurak, Richard B. Timmons, Brian L. Edwards, Aruna B. Wijeratne, Frank W. Foss, Samuel H. Yang, and Evelyn H. Wang
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chemistry.chemical_classification ,Desorption electrospray ionization ,Chromatography ,Carboxylic acid ,Peptide ,Surfaces and Interfaces ,Polymer ,Condensed Matter Physics ,Condensation reaction ,Mass spectrometry ,Combinatorial chemistry ,Plasma polymerization ,chemistry.chemical_compound ,chemistry ,Electrochemistry ,General Materials Science ,Spectroscopy ,Acrylic acid - Abstract
The extraction of active compounds from natural sources has shown to be an effective approach to drug discovery. However, the isolation and identification of natural products from complex extracts can be an arduous task. A novel approach to drug discovery is presented through the use of polymer screens functionalized with an l-lysine-d-alanine-d-alanine (Kaa) peptide to create new affinity capture mesh screen materials. The Kaa sequence is a well-characterized specific binding site for antibiotics that inhibit cell wall synthesis in Gram-positive bacteria. The detailed synthesis and characterization of these novel screen materials are presented in this work. Polypropylene mesh screens were first coated with a poly(acrylic acid) film by pulsed plasma polymerization. The synthesized Kaa peptide was then covalently attached to carboxylic acid groups through a condensation reaction. An analysis of captured compounds was performed in a rapid fashion with transmission-mode desorption electrospray ionization (TM...
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- 2013
11. Bioinspired Oxidative Aromatizations: One-Pot Syntheses of 2-Substituted Benzothiazoles and Pyridines by Aerobic Organocatalysis
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Frank W. Foss, Shuai Chen, and Mohammad Shawkat Hossain
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Renewable Energy, Sustainability and the Environment ,General Chemical Engineering ,Aromatization ,General Chemistry ,Flavin group ,Catalysis ,chemistry.chemical_compound ,chemistry ,Biomimetic synthesis ,Organocatalysis ,Electrophile ,Environmental Chemistry ,Organic chemistry ,Methanol ,Ammonium acetate - Abstract
Heteroaromatic structures are abundant in bioactive natural products, medicines, and other functional materials. Oxidative aromatization is a common method for preparing heteroaromatic species from simple building blocks. A bioinspired method was developed using robust flavin mimics as organocatalysts that perform O2-fueled oxidations of 1,4-dihydropyridines to pyridines and benzothiazolines to benzothiazoles in high yields (>95%) and purity at ambient temperature in methanol. The efficient oxidative aromatizations facilitated one-pot multicomponent syntheses of pyridines (from various aldehydes, dicarbonyl compounds, and ammonium acetate, in yields ranging from 35 to 95%) and benzothiazoles (from 2-aminothiophenol and various aldehydes, in 78–95% yield) without metals or reactive stoichiometric oxidants. For most substrates, neutral conditions were effective. Hindered 4-substituted dihydropyridines that oxidized slowly were accelerated by selection of more electrophilic flavin catalysts and the addition ...
- Published
- 2013
12. Diastereoselective discrimination of lysine–alanine–alanine peptides by zwitterionic cinchona alkaloid-based chiral selectors using electrospray ionization mass spectrometry
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Mahwish Yasin, Jonathan M. Bobbitt, Doug D. Carlton, Wolfgang Lindner, Sumit Bhawal, Reinhard Pell, Stefanie Wernisch, Li Li, Kevin A. Schug, and Frank W. Foss
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Ions ,Spectrometry, Mass, Electrospray Ionization ,Electrospray ,Dipeptide ,Chromatography ,Stereochemistry ,Cinchona Alkaloids ,Lysine ,Electrospray ionization ,Organic Chemistry ,Stereoisomerism ,General Medicine ,Tripeptide ,Arginine ,Mass spectrometry ,Biochemistry ,Analytical Chemistry ,chemistry.chemical_compound ,chemistry ,Amine gas treating ,Carboxylate ,Oligopeptides ,Chromatography, High Pressure Liquid ,Quinuclidine - Abstract
Electrospray ionization-mass spectrometry (ESI-MS) was used to investigate stereoselective interactions between seven zwitterionic alkylsulfonate-modified cinchona alkaloid chiral selectors and biologically relevant lysine-alanine-alanine tripeptide and alanine-alanine dipeptide selectands in modified methanolic solutions. Ion intensities from full scan mass spectra were used to assess degrees of association, the ratios of which were used to calculate selectivities for different selector-selectand pairs. The results support prior work on similar systems using HPLC, in that binding is mediated in these systems primarily through the quinuclidine amine on the selector and the C-terminal carboxylate of the peptide. N(α)- and N(α), N(ɛ)-acetylated forms of the tripeptide were used to study the relative contribution to binding imparted by the presence of multiple basic amines on the tripeptide with the selectors; this was not previously investigated by HPLC. The ability of the sulfonate group on the selector to reach and preferentially interact with the N(ɛ)-amine on the side chain of lysine was revealed. Overall, in acidic methanol conditions (0.5% acetic acid), degrees of association ranged from 1.5% to 17%, and selectivities ranged from non-selective to a 5.5:1 preference for binding one peptide stereoisomer over another with a given chiral selector. In sodium acetate (100 μM)-modified methanol solutions, significant changes in degrees of association (ranging from 4% to 25%) and selectivities (ranging from non-selective to 4.2:1 preference) were observed. These mass spectrometry experiments help to clarify the chiral recognition mechanism for these selectors and suggest that retention and selectivity could be further modulated in HPLC experiments through the utilization of alkali salt-containing mobile phases.
- Published
- 2012
13. ChemInform Abstract: Gram Scale Conversion of R-BINAM to R-NOBIN
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Zachary S. Breitbach, Darshan C. Patel, Daniel W. Armstrong, Yeeun Lim, Ross M. Woods, Andy Wang, and Frank W. Foss
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chemistry.chemical_compound ,Enantiopure drug ,chemistry ,Scale (ratio) ,NOBIN ,Organic chemistry ,General Medicine ,Gram - Abstract
An efficient single-step conversion of (R)-BINAM to highly enantiopure (R)-NOBIN is developed.
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- 2016
14. Gram Scale Conversion of R-BINAM to R-NOBIN
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Andy Wang, Zachary S. Breitbach, Ross M. Woods, Yeeun Lim, Darshan C. Patel, Frank W. Foss, and Daniel W. Armstrong
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chemistry.chemical_compound ,chemistry ,010405 organic chemistry ,Stereochemistry ,NOBIN ,Yield (chemistry) ,Organic Chemistry ,Specific rotation ,010402 general chemistry ,01 natural sciences ,Racemization ,0104 chemical sciences ,Gram - Abstract
A mild, operationally simple, and single-step transition-metal-free protocol for the synthesis of enantiomerically pure (R)-(+)-2'-amino-1,1'-binaphthalen-2-ol (R-NOBIN) from (R)-(+)-1,1'-binaphthyl-2,2'-diamine (R-BINAM) is reported. The one-pot conversion proceeds with good yield and shows no racemization. The hydroxyl on the R-NOBIN product was shown to have come from water in the reaction medium via an H2(18)O study. The correct value of the specific rotation of R-NOBIN was reported.
- Published
- 2016
15. Aerobic Organocatalytic Oxidation of Aryl Aldehydes: Flavin Catalyst Turnover by Hantzsch’s Ester
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Shuai Chen and Frank W. Foss
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biology ,Dakin oxidation ,Aryl ,Organic Chemistry ,Flavin group ,Biochemistry ,Redox ,Cofactor ,Catalysis ,chemistry.chemical_compound ,chemistry ,biology.protein ,Organic chemistry ,Phenols ,NAD+ kinase ,Physical and Theoretical Chemistry - Abstract
The first Dakin oxidation fueled by molecular oxygen as the terminal oxidant is reported. Flavin and NAD(P)H coenzymes, from natural enzymatic redox systems, inspired the use of flavin organocatalysts and a Hantzsch ester to perform transition-metal-free, aerobic oxidations. Catechols and electron-rich phenols are achieved with as low as a 0.1 mol % catalyst loading, 1 equiv of Hantzsch ester, and O(2) or air as the stoichiometric oxidant source.
- Published
- 2012
16. Synthesis and biological evaluation of sphingosine kinase substrates as sphingosine-1-phosphate receptor prodrugs
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Michael D. Davis, Perry C. Kennedy, Ashley H. Snyder, Timothy L. Macdonald, Thomas P. Mathews, Yugesh Kharel, Kevin R. Lynch, and Frank W. Foss
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Propanols ,Stereochemistry ,Sphingosine-1-phosphate receptor ,Clinical Biochemistry ,Sphingosine kinase ,Pharmaceutical Science ,Biochemistry ,Article ,Mice ,Structure-Activity Relationship ,chemistry.chemical_compound ,Sphingosine ,Lymphopenia ,Fingolimod Hydrochloride ,Drug Discovery ,Animals ,Humans ,Prodrugs ,Sphingosine-1-phosphate ,Molecular Biology ,Oxazole ,Chemistry ,Kinase ,Organic Chemistry ,Receptors, Lysosphingolipid ,SPHK2 ,Propylene Glycols ,Molecular Medicine ,Immunosuppressive Agents - Abstract
In the search for bioactive sphingosine 1-phosphate (S1P) receptor ligands, a series of 2-amino-2-heterocyclic-propanols were synthesized. These molecules were discovered to be substrates of human-sphingosine kinases 1 and 2 (SPHK1 and SPHK2). When phosphorylated, the resultant phosphates showed varied activities at the five sphingosine-1-phosphate (S1P) receptors (S1P(1-5)). Agonism at S1P(1) was displayed in vivo by induction of lymphopenia. A stereochemical preference of the quaternary carbon was crucial for phosphorylation by the kinases and alters binding affinities at the S1P receptors. Oxazole and oxadiazole compounds are superior kinase substrates to FTY720, the prototypical prodrug immunomodulator, fingolimod (FTY720). The oxazole-derived structure was the most active for human SPHK2. Imidazole analogues were less active substrates for SPHKs, but more potent and selective agonists of the S1P(1) receptor; additionally, the imidazole class of compounds rendered mice lymphopenic.
- Published
- 2009
17. Mechanisms of trovafloxacin hepatotoxicity: Studies of a model cyclopropylamine-containing system
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Timothy L. Macdonald, Qin Sun, Frank W. Foss, and Ran Zhu
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Cyclopropanes ,Idiosyncratic drug reaction ,Magnetic Resonance Spectroscopy ,Hypochlorous acid ,Stereochemistry ,Clinical Biochemistry ,Reactive intermediate ,Pharmaceutical Science ,Models, Biological ,Biochemistry ,Aldehyde ,chemistry.chemical_compound ,Drug Discovery ,medicine ,Moiety ,Naphthyridines ,Molecular Biology ,Antibacterial agent ,chemistry.chemical_classification ,Aldehydes ,Molecular Structure ,Organic Chemistry ,Nuclear magnetic resonance spectroscopy ,medicine.disease ,Trovafloxacin ,Liver ,chemistry ,Molecular Medicine ,Oxidation-Reduction ,Chromatography, Liquid ,Fluoroquinolones ,medicine.drug - Abstract
The mechanism for the hepatotoxicity of trovafloxacin remains unresolved. Trovafloxacin contains a cyclopropylamine moiety which has a potential to be oxidized to reactive intermediate(s) although other putative elements may exist. In this study, a drug model of trovafloxacin containing the cyclopropylamine substructure was synthesized. Chemical oxidation of the drug model by K(3)Fe(CN)(6) and NaClO revealed that both oxidants oxidize this drug model to a reactive alpha,beta-unsaturated aldehyde, 11. The structure of 11 was fully elucidated by LC/MS/MS and NMR analysis. These results suggested that P450s with heme-iron center and myeloperoxidase generating hypochlorous acid in the presence of chloride ion are capable of bioactivating the cyclopropylamine moiety of trovafloxacin. This deleterious metabolism may lead to eventual hepatotoxicity.
- Published
- 2007
18. Synthesis and biological evaluation of γ-aminophosphonates as potent, subtype-selective sphingosine 1-phosphate receptor agonists and antagonists
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Michael Rouse, Michael D. Davis, Kevin R. Lynch, Timothy L. Macdonald, Mark D. Okusa, Ashley H. Snyder, and Frank W. Foss
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Agonist ,Magnetic Resonance Spectroscopy ,Optical Rotation ,medicine.drug_class ,Sphingosine-1-phosphate receptor ,Clinical Biochemistry ,Molecular Conformation ,Organophosphonates ,Pharmaceutical Science ,Guanosine triphosphate ,Biochemistry ,Article ,Cell Line ,Capillary Permeability ,Mice ,chemistry.chemical_compound ,Lymphopenia ,Drug Discovery ,medicine ,Animals ,Tissue Distribution ,Sphingosine-1-phosphate ,Receptor ,Molecular Biology ,Sphingosine ,Organic Chemistry ,Antagonist ,Mice, Inbred C57BL ,Receptors, Lysosphingolipid ,chemistry ,Phosphoserine ,Molecular Medicine ,Indicators and Reagents ,Guanosine Triphosphate - Abstract
The synthesis of N-arylamide phosphonates and related arylether and arylamine analogues provided potent, subtype-selective agonists and antagonists of the five known sphingosine 1-phosphate (S1P) receptors (S1P1–5). To this end, the syntheses of phosphoserine mimetics—selectively protected and optically active phosphonoserines—are described. In vitro binding assays showed that the implementation of phosphonates as phosphate mimetics provided compounds with similar receptor binding affinities as compared to their phosphate precursors. meta-substituted arylamide phosphonates were discovered to be antagonists of the S1P1 and S1P3 receptors. When administered to mice, an antagonist blocked the lymphopenia evoked by a S1P receptor agonist and caused capillary leakage in both lung and kidney.
- Published
- 2007
19. Steady-state kinetics and spectroscopic characterization of enzyme-tRNA interactions for the non-heme diiron tRNA-monooxygenase, MiaE
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Brad S. Pierce, Frank W. Foss, Bishnu P. Subedi, Siai Zhang, and Andra L. Corder
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Salmonella typhimurium ,Conformational change ,Circular dichroism ,biology ,Chemistry ,Stereochemistry ,Protein Conformation ,Circular Dichroism ,Electron Spin Resonance Spectroscopy ,Active site ,Biochemistry ,Mixed Function Oxygenases ,Hydroxylation ,chemistry.chemical_compound ,Kinetics ,Spectroscopy, Mossbauer ,Protein structure ,Bacterial Proteins ,RNA, Transfer ,Salmonella Infections ,biology.protein ,Enzyme kinetics ,Protein secondary structure ,Ferredoxin ,Protein Binding - Abstract
MiaE [2-methylthio-N(6)-isopentenyl-adenosine(37)-tRNA monooxygenase] isolated from Salmonella typhimurium is a unique non-heme diiron enzyme that catalyzes the O2-dependent post-transcriptional allylic hydroxylation of a hypermodified nucleotide (ms(2)i(6)A37) at position 37 of selected tRNA molecules to produce 2-methylthio-N(6)-(4-hydroxyisopentenyl)-adenosine(37). In this work, isopentenylated tRNA substrates for MiaE were produced from small RNA oligomers corresponding to the anticodon stem loop (ACSL) region of tRNA(Trp) using recombinant MiaA and dimethylallyl pyrophosphate. Steady-state rates for MiaE-catalyzed substrate hydroxylation were determined using recombinant ferredoxin (Fd) and ferredoxin reductase (FdR) to provide a catalytic electron transport chain (ETC) using NADPH as the sole electron source. As with previously reported peroxide-shunt assays, steady-state product formation retains nearly stoichiometric (>98%) E stereoselectivity. MiaE-catalyzed i(6)A-ACSL(Trp) hydroxylation follows Michaelis-Menten saturation kinetics with kcat, KM, and V/K determined to be 0.10 ± 0.01 s(-1), 9.1 ± 1.5 μM, and ∼11000 M(-1) s(-1), respectively. While vastly slower, MiaE-catalyzed hydroxylation of free i(6)A nucleoside could also be observed using the (Fd/FdR)-ETC assay. By comparison to the V/K determined for i(6)A-ACSL substrates, an ∼6000-fold increase in enzymatic efficiency is imparted by ACSL(Trp)-MiaE interactions. The impact of substrate tRNA-MiaE interactions on protein secondary structure and active site electronic configuration was investigated using circular dichroism, dual-mode X-band electron paramagnetic resonance, and Mossbauer spectroscopies. These studies demonstrate that binding of tRNA to MiaE induces a protein conformational change that influences the electronic structure of the diiron site analogous to what has been observed for various bacterial multicomponent diiron monooxygenases upon titration with their corresponding effector proteins. These observations suggest that substrate-enzyme interactions may play a pivotal role in modulating the reactivity of the MiaE diiron active site. Moreover, the simplified monomeric (α) protein configuration exhibited by MiaE provide an unparalleled opportunity to study the impact of protein-effector interactions on non-heme diiron site geometry and reactivity.
- Published
- 2014
20. Synthesis, stability, and implications of phosphothioate agonists of sphingosine-1-phosphate receptors
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Timothy L. Macdonald, Michael D. Davis, Ashley H. Snyder, Kevin R. Lynch, Frank W. Foss, Molly A. Zigler, and Jeremy J. Clemens
- Subjects
Agonist ,Magnetic Resonance Spectroscopy ,medicine.drug_class ,G protein ,Sphingosine-1-phosphate receptor ,Organic Chemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Thionucleotides ,Phosphate ,Biochemistry ,Chemical synthesis ,Receptors, Lysosphingolipid ,chemistry.chemical_compound ,chemistry ,In vivo ,Drug Discovery ,medicine ,Molecular Medicine ,Sphingosine-1-phosphate ,Receptor ,Molecular Biology - Abstract
Phosphothioates may provide metabolic stability when compared to their phosphate counterparts, while retaining the potency and efficacy as agonists at sphingosine-1-phosphate (S1P) G-protein coupled receptors. Unlike their phosphate precursors, phosphothioate compounds with S1P-receptor profiles similar to that of FTY720, an emerging immunomodulator, were shown to evoke prolonged lymphopenia in vivo. Analysis of mouse plasma concentrations for a series of related alcohol/phosphate/phosphothioate compounds showed the conversion of the phosphate to alcohol. These preliminary data highlight the importance of metabolic regulation of S1P receptor ligands.
- Published
- 2005
21. Thermally accelerated oxidative degradation of quercetin using continuous flow kinetic electrospray-ion trap-time of flight mass spectrometry
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Kevin A. Schug, Frank W. Foss, and Jeremy S. Barnes
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Electrospray ,Spectrometry, Mass, Electrospray Ionization ,Hot Temperature ,Chemistry ,Electrospray ionization ,Analytical chemistry ,Mass spectrometry ,Tandem mass spectrometry ,Photochemistry ,Hydroxylation ,chemistry.chemical_compound ,Kinetics ,Structural Biology ,Degradation (geology) ,Quercetin ,Ion trap ,Time-of-flight mass spectrometry ,Oxidation-Reduction ,Spectroscopy - Abstract
Thermally accelerated oxidative degradation of aqueous quercetin at pH 5.9 and 7.4 was kinetically measured using an in-house built online continuous flow device made of concentric capillary tubes, modified to fit to the inlet of an electrospray ionization-ion trap-time-of-flight-mass spectrometer (ESI-IT-TOF-MS). Time-resolved mass spectral measurements ranging from 2 to 21 min were performed in the negative mode to track intermediate degradation products and to evaluate the degradation rate of the deprotonated quercetin ion, [Q-H](-). Upon heating solutions in the presence of dissolved oxygen, degradation of [Q-H](-) was observed and was accelerated by an increase in pH and temperature. Regardless of the condition, the same degradation pathways were observed. Degradation mechanisms and structures were determined using higher order tandem mass spectrometry (up to MS(3)) and high mass accuracy. The observed degradation mechanisms included oxidation, hydroxylation, and ring-cleavage by nucleophilic attack. A chalcan-trione structure formed by C-ring opening after hydroxylation at C2 was believed to be a precursor for other degradation products, formed by hydroxylation at the C2, C3, and C4 carbons from attack by nucleophilic species. This resulted in A-type and B-type ions after cross-ring cleavage of the C-ring. Based on time of appearance and signal intensity, nucleophilic attack at C3 was the preferred degradation pathway, which generated 2,4,6-trihydroxymandelate and 2,4,6-trihydroxyphenylglyoxylate ions. Overall, 23 quercetin-related ions were observed.
- Published
- 2013
22. ChemInform Abstract: Organocatalytic Dakin Oxidation by Nucleophilic Flavin Catalysts
- Author
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Shuai Chen, Frank W. Foss, and Mohammad Shawkat Hossain
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inorganic chemicals ,chemistry.chemical_compound ,Nucleophile ,Chemistry ,Dakin oxidation ,organic chemicals ,Organocatalysis ,Organic chemistry ,heterocyclic compounds ,General Medicine ,Flavin group ,Phenols ,Catalysis - Abstract
Electron-rich arylaldehydes are effectively converted to phenols using the flavin catalysts (I).
- Published
- 2012
23. Organocatalytic Dakin oxidation by nucleophilic flavin catalysts
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Shuai Chen, Mohammad Shawkat Hossain, and Frank W. Foss
- Subjects
Molecular Structure ,Dakin oxidation ,Reducing agent ,Organic Chemistry ,Catechols ,Acetophenones ,Flavin group ,Biochemistry ,Catalysis ,chemistry.chemical_compound ,chemistry ,Nucleophile ,Phenols ,Flavins ,Organic chemistry ,Combinatorial Chemistry Techniques ,Reactivity (chemistry) ,Physical and Theoretical Chemistry ,Oxidation-Reduction - Abstract
Flavin catalysts perform the first organocatalytic Dakin oxidation of electron-rich arylaldehydes to phenols under mild, basic conditions. Catechols are readily prepared, and the oxidation of 2-hydroxyacetophenone was achieved. Aerobic oxidation is displayed in the presence of Zn(0) as a reducing agent. This reactivity broadens the scope of biomimetic flavin catalysis in the realm of nucleophilic oxidations, providing a framework for mechanistic investigations for related oxidations, such as the Baeyer–Villiger oxidation and Weitz–Scheffer epoxidation.
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- 2012
24. Multilayer chitosan-based open tubular capillary anion exchange column with integrated monolithic capillary suppressor
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Purnendu K. Dasgupta, Xiaojia Huang, and Frank W. Foss
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geography ,Capillary electrochromatography ,Chitosan ,geography.geographical_feature_category ,Capillary action ,Ion chromatography ,Analytical chemistry ,Hydroxylamines ,Biochemistry ,Analytical Chemistry ,chemistry.chemical_compound ,Membrane ,Column chromatography ,chemistry ,Capillary Electrochromatography ,Environmental Chemistry ,Methacrylates ,Theoretical plate ,Monolith ,Spectroscopy ,Chromatography, High Pressure Liquid ,Acrylic acid - Abstract
We describe a multilayered open tubular anion exchange column fabricated by alternately pumping solutions of chitosan and glutaraldehyde. The column is terminated in an integrally bonded monolithic suppressor cast around a mandrel of a tungsten wire, composed of an acrylic acid (AA)-ethylene dimethacrylate (EDMA) monolith that is made with sufficient porogen for the monolith to function as a membrane. For a 4.5m long 75 μm bore column coated with 24 successive layers of the condensation polymer (estimated to contain ~72 molecular layers) and coupled to 1cm length of a suppressor fabricated with 55-60% AA, effective separation of several common anions (F(-), Cl(-), NO(2)(-), Br(-), NO(3)(-), average number of theoretical plates ~12,000) and adequate suppression of 1 mM KOH used as eluent was observed at a flow rate of 800 nL min(-1) to obtain sub-picomol detection limits at an operating pressure of ~1 bar. The separation is not time efficient but the system can be meritorious in unique niche applications where a small form factor is desired and liquid volume and power consumption are more important than separation speed.
- Published
- 2011
25. The electrical properties of biphenylenes
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Ronald Breslow, Frank W. Foss, Latha Venkataraman, Severin T. Schneebeli, Héctor Vázquez, Mark S. Hybertsen, Rachid Skouta, and Maria Kamenetska
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Organic Chemistry ,Inorganic chemistry ,Conductance ,Fluorene ,Biphenylene ,Photochemistry ,Biochemistry ,law.invention ,chemistry.chemical_compound ,chemistry ,Thioether ,law ,Molecular conductance ,Molecule ,Physical and Theoretical Chemistry ,Scanning tunneling microscope ,Antiaromaticity - Abstract
The effect of the partial antiaromaticity of biphenylene on its substitution chemistry, its oxidation potential, and its single-molecule conductance is explored. Biphenylene and fluorene molecules with linkers of two amino groups or two cyclic thioether groups were synthesized and their conduction properties were investigated using scanning tunneling microscopy (STM) break-junction techniques and DFT calculations. Despite the partial antiaromaticity of biphenylene, which causes the biphenylenes to be much more easily oxidizable, no significant increase in molecular conductance was found.
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- 2010
26. The isothiocyanate class of bioactive nutrients covalently inhibit the MEKK1 protein kinase
- Author
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Dennis J. Templeton, Joshua M. Rady, Timothy L. Macdonald, Frank W. Foss, and Janet V. Cross
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MAPK/ERK pathway ,Cancer Research ,MAP Kinase Kinase Kinase 1 ,Biology ,Electrophiles ,lcsh:RC254-282 ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Menadione ,Isothiocyanates ,Genetics ,Humans ,Protein kinase A ,Mitogen-activated protein kinases ,Protein Kinase Inhibitors ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Kinase ,Enzyme inhibitors ,Cell cycle ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Cell biology ,Enzyme ,chemistry ,Oncology ,Food ,030220 oncology & carcinogenesis ,Isothiocyanate ,Signal transduction ,Cytology ,Research Article ,HeLa Cells - Abstract
Background Dietary isothiocyanates (ITCs) are electrophilic compounds that have diverse biological activities including induction of apoptosis and effects on cell cycle. They protect against experimental carcinogenesis in animals, an activity believed to result from the transcriptional induction of "Phase 2" enzymes. The molecular mechanism of action of ITCs is unknown. Since ITCs are electrophiles capable of reacting with sulfhydryl groups on amino acids, we hypothesized that ITCs induce their biological effects through covalent modification of proteins, leading to changes in cell regulatory events. We previously demonstrated that stress-signaling kinase pathways are inhibited by other electrophilic compounds such as menadione. We therefore tested the effects of nutritional ITCs on MEKK1, an upstream regulator of the SAPK/JNK signal transduction pathway. Methods The activity of MEKK1 expressed in cells was monitored using in vitro kinase assays to measure changes in catalytic activity. The activity of endogenous MEKK1, immunopurified from ITC treated and untreated LnCAP cells was also measured by in vitro kinase assay. A novel labeling and affinity reagent for detection of protein modification by ITCs was synthesized and used in competition assays to monitor direct modification of MEKK1 by ITC. Finally, immunoblots with phospho-specific antibodies were used to measure the activity of MAPK protein kinases. Results ITCs inhibited the MEKK1 protein kinase in a manner dependent on a specific cysteine residue in the ATP binding pocket. Inhibition of MEKK1 catalytic activity was due to direct, covalent and irreversible modification of the MEKK1 protein itself. In addition, ITCs inhibited the catalytic activity of endogenous MEKK1. This correlated with inhibition of the downstream target of MEKK1 activity, i.e. the SAPK/JNK kinase. This inhibition was specific to SAPK, as parallel MAPK pathways were unaffected. Conclusion These results demonstrate that MEKK1 is directly modified and inhibited by ITCs, and that this correlates with inhibition of downstream activation of SAPK. These results support the conclusion that ITCs may carry out many of their actions by directly targeting important cell regulatory proteins.
- Published
- 2007
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27. Selective sphingosine 1-phosphate 1 receptor activation reduces ischemia-reperfusion injury in mouse kidney
- Author
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Mark D. Okusa, Timothy L. Macdonald, Alaa S. Awad, Kevin R. Lynch, Li Li, Hong Ye, Frank W. Foss, and Liping Huang
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medicine.medical_specialty ,Physiology ,Lymphocyte ,T-Lymphocytes ,Ischemia ,Vascular permeability ,Inflammation ,Thiophenes ,Kidney ,Capillary Permeability ,chemistry.chemical_compound ,Mice ,Sphingosine ,Fingolimod Hydrochloride ,Internal medicine ,medicine ,Leukocytes ,Animals ,Sphingosine-1-phosphate ,Lymphocyte Count ,RNA, Messenger ,Receptor ,Peroxidase ,Oxadiazoles ,Reverse Transcriptase Polymerase Chain Reaction ,medicine.disease ,Mice, Inbred C57BL ,Receptors, Lysosphingolipid ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Propylene Glycols ,Creatinine ,Reperfusion Injury ,medicine.symptom ,Reperfusion injury - Abstract
The mechanisms involved in renal ischemia-reperfusion injury (IRI) are complex and appear to involve the early participation of bone marrow-derived cells. T lymphocytes participate in the pathogenesis of IRI. Sphingosine 1-phosphate (S1P) induces peripheral T cell depletion. Therefore, we hypothesized that S1P1receptor activation protects kidney from IRI. FTY-720, a non-receptor-selective sphingosine analog, was given intraperitoneally to C57BL/6 mice, and animals were subjected to ischemia for 32 min followed by reperfusion for 24 h. Plasma creatinine, blood count, myeloperoxidase (MPO) activity, and renal histology were determined. IRI led to a marked increase in plasma creatinine, MPO activity, leukocyte infiltration, and vascular permeability. FTY-720 significantly decreased plasma creatinine in a dose-response manner with a maximal reduction of ∼73 and ∼69% with doses of 240 and 48 μg/kg, respectively. MPO, leukocyte infiltration, vascular permeability, and peripheral blood lymphocyte counts were markedly decreased with FTY-720 treatment. The protective effect of FTY-720 was reversed with VPC-44116, a selective S1P1receptor antagonist. Furthermore, SEW-2871, a selective S1P1agonist, significantly decreased plasma creatinine in a dose-response manner with a maximal reduction of ∼70% with a dose of 10 mg/kg. Analysis of kidneys by light microscopy revealed minimal histological signs of ischemic injury with FTY-720 or SEW-2871 treatment compared with the vehicle group. Using RT-PCR, we found a time-dependent increase in the S1P1mRNA expression following IRI that begins after 2 h with the maximum expression at ∼4 h. We conclude that the protective effect of FTY-720 is due primarily to activation of S1P1receptors. The mechanism of protection is not known but may be related to peripheral lymphocyte depletion or direct effects on kidney cells expressing S1P1receptor.
- Published
- 2006
28. Charge transport in nanoscale aromatic and antiaromatic systems
- Author
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Ronald Breslow and Frank W. Foss
- Subjects
Stereochemistry ,Aromaticity ,Condensed Matter Physics ,Ring (chemistry) ,Pi bond ,Aromatic ring current ,chemistry.chemical_compound ,Molecular wire ,Delocalized electron ,chemistry ,Chemical physics ,General Materials Science ,Cyclobutadiene ,Antiaromaticity - Abstract
Molecules such as benzene, that have six pi electrons cyclically delocalized, have the special stability that chemists call aromaticity. When electricity passes through a molecular wire containing a benzene ring a quinone-like structure is induced, and there is some loss of aromaticity. The conductance of such systems correlates with the magnitude of this effect. A molecule such as cyclobutadiene with only four cyclically delocalized pi electrons has special instability, called antiaromaticity. Evidence that such antiaromatic systems could convey high conductance in appropriate systems is derived from electrochemical studies, which also detect geometric changes in some thiophene-derived nanolength wires.
- Published
- 2008
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