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Multi-factors have been reported to affect the gut microbiome, including genotype, age, diet, and nutrition. However, few reports have investigated the relative capacity of different factors to shape the gut microbiome in a single study. Our design used a genetic Vitamin A deficient mouse model, the Rbp4-/- mouse, feeding with the low Vitamin A diets at different ages of initiation (4 or 7 weeks) for 28 days. Fecal samples were collected for bacterial profiling at seven time points after diet controlling. With RBP4 depletion, Akkermansia decreased and Bacteroides increased, while Desulfovibrio, Barnesiella, Clostridium_XlVa, and Lactobacillus fluctuated. The bacterial community swiftly adjusted with the Vitamin A-deficient diet administration and gradually changed (e.g., decrease of Barnesiella and increase of Desulfovibrio). Age exerted a relatively weaker but long-last influence. At an earlier age to feed a Vitamin-A deficient diet, a higher microbial dysbiosis index (MDI) will be valued. Of note, the shaping effects of diet and age on the bacterial community varied with the difference of genotype, which might indicate a greater role of genotype than diet and age in shaping the gut microbiome.

The competition between sulfate-reducing bacteria and methane-producing archaea has a major influence on organic matter removal, as well as the success of sulfidogenic systems. This study investigated the performance of six batch sulfidogenic reactors in response to different COD/sulfate ratios (1.0 and 2.0) and electron donors (cheese whey, ethanol, and sodium lactate) by evaluating the biochemical mechanisms of sulfate reduction, organic matter oxidation, and microbial structure modification. A COD/sulfate ratio of 1.0 resulted in high sulfidogenic activity for all electron donors, thereby achieving a nearly 80% sulfate removal. Lactate provided high sulfate removal rates at COD/sulfate ratios of 1.0 (80%) and 2.0 (90%). A COD/sulfate ratio of 2.0 decreased the sulfate removal rates by 25 and 28% when ethanol and cheese whey were used as substrates. The sulfate-reducing bacteria populations increased using ethanol and lactate at a COD/sulfate ratio of 1.0. Particularly, Desulfovibrio, Clostridium, and Syntrophobacter were predominant. Influent composition and COD/sulfate ratio influenced the relative abundance of the microbial communities. Therefore, controlling these parameters may facilitate the wastewater treatment with high sulfate levels through bacterial activity.

There is still a lack of understanding of H2S formation in agricultural waste, which leads to poor odour prevention and control. Microbial sulfate reduction is a major process contributing to sulfide formation in natural and technogenic environments with high sulfate and low oxygen concentration. Agricultural waste can be considered a low-sulfate system with no obvious input of oxidised sulfur compounds. The purpose of this study was to characterise a microbial community participating in H2S production and estimate the microbial sulfate reduction rate (SRR) in manure slurry from a large-scale swine finishing facility in Western Siberia. In a series of manure slurry microcosms, we identified bacterial consortia by 16S rRNA gene profiling and metagenomic analysis and revealed that sulfate-reducing Desulfovibrio were key players responsible for H2S production. The SRR measured with radioactive sulfate in manure slurry was high and comprised 7.25 nmol S cm−3 day−1. Gypsum may be used as a solid-phase electron acceptor for sulfate reduction. Another plausible source of sulfate is a swine diet, which often contains supplements in the form of sulfates, including lysine sulfate. Low-sulfur diet, manure treatment with iron salts, and avoiding gypsum bedding are possible ways to mitigate H2S emissions from swine manure.

International audience; Microbiological reductive sulfidation (RS) has rarely been documented, although it represents an efficient strategy for thiol formation. In this work, we reported on the sulfate-respiring bacterium Desulfovibrio sp.86 that has previously demonstrated RS activity toward the pesticide chlordecone. The purpose of the study was to assess its substrate-versatility using a set of 28 carbonyls, to compare with chemical RS and to rationalize the observed trends using a dual experimental and theoretical approach. The chemical RS generally proceeds in two steps (S-O exchange using a sulfur donor like P4S10, reduction of the thione intermediate). Intriguingly, chlordecone was found to be converted into chlordecthiol following the first step. Hence, we designed a protocol and applied it to the 28 substrates to assess their propensity to be directly converted into thiols with the P4S10 treatment alone. Finally, we performed density functional theory calculations on these carbonyls and their thiocarbonyl derivatives to build a set of structural, electronic and thermodynamic parameters. The results showed that chemical and microbiological RS probably involved two distinct mechanisms. Chemically, we observed that several carbonyls, possessing electron-withdrawing groups and/or aromatic rings, were directly transformed into thiols in the presence of P4S10. The correlation obtained with the electron affinity of the thiones led us conclude that a probable single-electron reductive transfer occurred during the first step. We also found that Desulfovibrio sp.86 transformed a variety of aldehydes and ketones, without ever detecting thiones. No significant correlation was observed with the calculated parameters but a relationship between aldehyde RS biotransformation and bacterial growth was observed. Differences in selectivity with chemical RS open the way for further applications in organic synthesis.

Background: To investigate the changes of intestinal microbiota and metabolites in sepsis mice with acute gastrointestinal injury before and after the use of antibiotics, and to explore the possible effects of these changes on the body. Methods: Twenty-four 6-8-w-old SPF-grade C57BL/6J male mice were selected, and the mice were randomly divided into three groups. The mice were treated by tail vein injection for 3 days. The intestinal motility of mice after administration was detected. The mice feces were collected for 16S rRNA and Untargeted metabonomics detection. Results: The use of antibiotics in sepsis mice can change the composition of intestinal microbiota and metabolites. LD3, AD3 and LAD3 samples had significant differences in bacterial species. Desulfovibrio was the species with a significant difference in LAD3. In addition, we found that the composition of those intestinal microbiota were correlated with changes in intestinal motility. The untargeted metabolomics analysis showed that the fecal metabolites of LD3 and LAD3 samples were significantly different. In addition to the basic metabolites, Benzoic acid and 4-Hydroxybenzoic acid were also found, and Desulfovibrio was associated with them. Conclusions: The use of antibiotics in sepsis mice can lead to changes in the intestinal microbiota and metabolite levels, which may be related to the severity of acute gastrointestinal injury in sepsis mice. Inhibiting Desulfovibrio in the intestine and using Benzoic acid and 4-Hydroxybenzoic acid as a marker for the production of Desulfovibrio may reduce the inflammatory degree of acute gastrointestinal injury in sepsis.

Two global cycles, iron and sulfur, are critically interconnected in estuarine environments by microbiological actors. To this point, the methods of laboratory study of this interaction have been limited. Here we propose a methodology for co-culturing from numerous coastal environments, from the same source inocula, iron-oxidizing and sulfate-reducing bacteria. The use of same source inocula is largely beneficial to understand real-world interactions that are likely occurring in situ. Through the use of this methodology, the ecological interactions between these groups can be studied in a more controlled environment. Here, we characterize the oxygen and hydrogen sulfide concentrations using microelectrode depth profiling in the co-cultures of iron-oxidizing bacteria and sulfate-reducing bacteria. These results suggest that while oxygen drives the relationship between these organisms and sulfate-reducers are reliant on iron-oxidizers in this culture to create an anoxic environment, there is likely another environmental driver that also influences the interaction as the two remain spatially distinct, as trends in FeS precipitation changed within the anoxic zone relative to the presence of Fe(III) oxyhydroxides. Understanding the relationship between iron-oxidizing and sulfate-reducing bacteria will ultimately have implications for understanding microbial cycling in estuarine environments as well as in processes such as controlling microbially influenced corrosion.

Currently, knowledge is limited concerning the impact of a Lactobacillus plantarum JL01 diet for weaned piglets on caecal bacteria and metabolite profiles. In our experiments, 24 weaned piglets were randomly divided into two groups; each piglet in the treatment groups (Cec-Lac) was fed a basic diet and administered 10 ml of L. plantarum JL01 (1·0 × 109 CFU per ml) every day. The control group (Cec-Con) was fed a basic diet. After feeding for 28 days, we analysed the parameters of the caecal digesta of weaned piglets. We used 16S rDNA gene sequencing and mass spectrometry (MS)-based metabolomics techniques to investigate the effect of a L. plantarum JL01 diet on intestinal microbial composition and its metabolite profiles in the caecum contents of weaned piglets. The results showed that the richness estimators (ACE and Chao indices) in the caecal bacteria increased in the Cec-Lac group. Prevotella_2 and Desulfovibrio decreased significantly, while Pantoea and Rectale_group increased in the caecum of weaned piglets in the Cec-Lac group. Furthermore, Pearson's correlation analysis revealed that the genus Rectale_group was positively correlated with indole-3-acetic acid (P

Elevated nitrate in the environment inhibits sulfate reduction by important microorganisms of sulfate-reducing bacteria (SRB). Several SRB may respire nitrate to survive under elevated nitrate, but how SRB that lack nitrate reductase survive to elevated nitrate remains elusive. To understand nitrate adaptation mechanisms, we evolved 12 populations of a model SRB (i.e., Desulfovibrio vulgaris Hildenborough, DvH) under elevated NaNO(3) for 1000 generations, analyzed growth and acquired mutations, and linked their genotypes with phenotypes. Nitrate-evolved (EN) populations significantly (p

A paramour factor limiting metal-microorganism interaction is the metal ion concentration, and the metal precipitation efficiency driven by microorganisms is sensitive to metal ion concentration. The aim of the work was to determine the tolerance of the sulfidogenic sludge generated from hydrothermal vent sediments at microcosms level to different concentrations of Fe, Cu and Zn and the effect on the microbial community. In this study the chemical oxygen demand (COD) removal, sulfate-reducing activity (SRA) determination, inhibition effect through the determination of IC50, and the characterization of the bacterial community´s diversity were conducted. The IC50 on SRA was 34 and 81 mg/L for Zn and Cu, respectively. The highest sulfide concentration (H2S mg/L) and % of sulfate reduction obtained were: 511.30 ± 0.75 and 35.34 ± 0.51 for 50 mg/L of Fe, 482.48 ± 6.40 and 33.35 ± 0.44 for 10 mg/L of Cu, 442.26 ± 17.1 and 30.57 ± 1.18 for 10 mg/L of Zn, respectively. The COD removal rates were of 71.81 ± 7.6, 53.92 ± 1.07 and 57.68 ± 10.2 mg COD/ L d for Fe (50 mg/L), Cu (40 mg/L) and Zn (20 mg/L), respectively. Proteobacteria, Firmicutes, Chloroflexi and Actinobacteria were common phyla to four microcosms (stabilized sulfidogenic and added with Fe, Cu or Zn). The dsrA genes of Desulfotomaculum acetoxidans, Desulfotomaculum gibsoniae and Desulfovibrio desulfuricans were expressed in the microcosms supporting the SRA results. The consortia could be explored for ex-situ bioremediation purposes in the presence of the metals tested in this work.

A novel electrostimulated ZVI-assisting functional ceramic filter -UBF/ceramic membrane MBR was evaluated for possessing low COD/(sulfate plus organic sulfur) high-strength para-ester wastewater in terms of COD, NH4+-N abatement and para-ester degradation. The porous functional ceramic filter was prepared as new biofilm material in the novel UBF. The 200 days' successive operation indicated that the combined UBF system is an on-site upgrading anaerobic technology for methanogenesis, gaving a satisfied performance even at a COD/(sulfate plus organic sulfur) ratio as low as 1.57 with OLR up to 6.8 g COD/L/day. Bacteroidetes, Chloroflexi, Firmicutes and Proteobacteria phyla were prevalent on day 200. The appearance of the Mesotoga genus can in charge of the para-ester degradation. Desulfovibrio with a relative abundance of 2.68% was the dominant sulfate-reducing bacterium (SRB) followed by Desulfarculus. The ceramic membrane MBR was then fed with the UBF effluent at a COD/(sulfate plus organic sulfur) of 1.57 at the optimal OLR. After 75 days of operation, the final effluent quality with a COD, para-ester, and NH4+-N of 171 mg/L, 22 mg/L and 27 mg/L, respectively, was discharged up the standard required. The result suggested the potential applicability of the integrated system in treating para-ester wastewater.

Acid mine drainage (AMD) has been a serious environmental issue that threatens soil and aquatic ecosystems. In this study, an acid-tolerant sulfate-reducing bacterium, strain S4, was isolated from the mud of an AMD storage pond in Vietnam via enrichment in anoxic mineral medium at pH 5. Comparative analyses of sequences of the 16S rRNA gene and dsrB gene involved in sulfate reduction revealed that the isolate belonged to the genus Desulfovibrio, and is most closely related to Desulfovibrio oxamicus (with 99% homology in 16S rDNA sequence and 98% homology in dsrB gene sequence). Denaturing gradient gel electrophoresis (DGGE) analyses of dsrB gene showed that strain S4 represented one of the two most abundant groups developed in the enrichment culture. Notably, strain S4 was capable of reducing sulfate in low pH environments (from 2 and above), and resistance to extremely high concentration of heavy metals (Fe 3,000 mg/l, Zn 100 mg/l, Cu 100 mg/ l). In a batch incubation experiment in synthetic AMD with pH 3.5, strain S4 showed strong effects in facilitating growth of a neutrophilic, metal sensitive Desulfovibrio sp. strain SR4H, which was not capable of growing alone in such an environment. Thus, it is postulated that under extreme conditions such as an AMD environment, acid- and metal-tolerant sulfate-reducing bacteria (SRB)- like strain S4 would facilitate the growth of other widely distributed SRB by starting to reduce sulfate at low pH, thus increasing pH and lowering the metal concentration in the environment. Owing to such unique physiological characteristics, strain S4 shows great potential for application in sustainable remediation of AMD.

The influence of ferrum (III) citrate added to the cultivation medium, on the reduction of sulfate, nitrate, and nitrite ions by sulfate-reducing bacteria Desulfovibrio desulfuricans IMV K-6, Desulfovibrio sp. Yav-6, and Desulfovibrio sp. Yav-8 isolated from Yavorivske Lake was studied. It was established that ferrum (III) citrate inhibits the biomass accumulation, SO42- reduction, and H2S production by the bacteria after addition of 1.74–3.47 mM Na2SO4×10 H2O and 1.74–10.41 mM FeC6H5O7 to the medium, in comparison with the growth and level of the reduction of sulfate ions by bacteria in the medium supplemented with only Na2SO4×10 H2O. At conditions of the bacteria cultivation in the presence of an equimolar amount (3.47 mM) of Na2SO4×10 H2O and FeC6H5O7, they reduced 2.5−2.7 times more Fe(ІІІ) than SO42- with Fe2+ production at a concentration 2.4−2.7 times greater than H2S. FeC6H5O7 inhibited growth, NO3- or NO2- reduction and NH4+ production by the bacteria in the presence of 1.74−3.47 mM NaNO3 or NaNO2 and 1.74−10.41 mM FeC6H5O7 in the medium, compared to the growth and level of nitrate or nitrite ions reduction in the medium with only NaNO3 or NaNO2. In the medium with the same initial content of 3.47 mM NaNO3 and 3.47 mM FeC6H5O7, the bacteria reduced 1.4 times more NO3- than Fe(ІІІ), with NH4+ production at concentration 1.1 times higher than that of Fe2+. In the medium with 3.47 mM NaNO2 and 3.47 mM FeC6H5O7, the cells reduced 1.4−1.6 times more Fe(ІІІ) than NO2-, with Fe2+ production at concentra­tion 1.5−1.6 times higher than NH4+. Ferrum (III) citrate had more inhibitory effect on the dissimilatory reduction of sulfate by the bacteria than of nitrate and nitrite ions, since the SO42- reduction by the bacteria at its presence in the medium decreased 2.0−4.7 times. The reduction of NO3- and NO2- decreased only 1.3−1.9 and 1.7−3.1 times, respectively, as compared with their reduction in the media with only Na2SO4×10 H2O, NaNO3 or NaNO2. Despite the fact that the reduction by cells of 1.74−10.41 mM Fe(III) in the media with Na2SO4×10 H2O, NaNO3 or NaNO2 decreased 1.1−2.1, 1.6−2.7 and 1.1−2.5 times, respectively, compared with its reduction in the medium with only FeC6H5O7. The investigated strains of bacteria were resistant to high concentrations of ferrum (III) citrate and, therefore, can be applied in the technologies of complex environment purification from pollution with ferrum, sulfur, and nitrogen compounds.

The majority of anaerobic biogeochemical cycling occurs within marine sediments. To understand these processes, quantifying the distribution of active cells and gross metabolic activity is essential. We present an isotope model rooted in thermodynamics to draw quantitative links between cell-specific sulfate reduction rates and active sedimentary cell abundances. This model is calibrated using data from a series of continuous culture experiments with two strains of sulfate reducing bacteria (freshwater bacterium Desulfovibrio vulgaris strain Hildenborough, and marine bacterium Desulfovibrio alaskensis strain G-20) grown on lactate across a range of metabolic rates and ambient sulfate concentrations. We use a combination of experimental sulfate oxygen isotope data and nonlinear regression fitting tools to solve for unknown kinetic, step-specific oxygen isotope effects. This approach enables identification of key isotopic reactions within the metabolic pathway, and defines a new, calibrated framework for understanding oxygen isotope variability in sulfate. This approach is then combined with porewater sulfate/sulfide concentration data and diagenetic modeling to reproduce measured 18O/16O in porewater sulfate. From here, we infer cell-specific sulfate reduction rates and predict abundance of active cells of sulfate reducing bacteria, the result of which is consistent with direct biological measurements.

Microbial extracellular electron transfer plays an important role in diverse biogeochemical cycles, metal corrosion, bioelectrochemical technologies, and anaerobic digestion. Evaluation of electron uptake from pure Fe(0) and stainless steel indicated that, in contrast to previous speculation in the literature, Desulfovibrio ferrophilus and Desulfopila corrodens are not able to directly extract electrons from solid-phase electron-donating surfaces. D. ferrophilus grew with Fe(III) as the electron acceptor, but Dp. corrodens did not. D. ferrophilus reduced Fe(III) oxide occluded within porous alginate beads, suggesting that it released a soluble electron shuttle to promote Fe(III) oxide reduction. Conductive atomic force microscopy revealed that the D. ferrophilus pili are electrically conductive and the expression of a gene encoding an aromatics-rich putative pilin was upregulated during growth on Fe(III) oxide. The expression of genes for multi-heme c-type cytochromes was not upregulated during growth with Fe(III) as the electron acceptor, and genes for a porin-cytochrome conduit across the outer membrane were not apparent in the genome. The results suggest that D. ferrophilus has adopted a novel combination of strategies to enable extracellular electron transport, which may be of biogeochemical and technological significance.

Extreme conditions and the availability of determinate substrates in oil fields promote the growth of a specific microbiome. Sulfate-reducing bacteria (SRB) and acid-producing bacteria (APB) are usually found in these places and can harm important processes due to increases in corrosion rates, biofouling and reservoir biosouring. Biocides such as glutaraldehyde, dibromo-nitrilopropionamide (DBNPA), tetrakis (hydroxymethyl) phosphonium sulfate (THPS) and alkyl dimethyl benzyl ammonium chloride (ADBAC) are commonly used in oil fields to mitigate uncontrolled microbial growth. The aim of this work was to evaluate the differences among microbiome compositions and their resistance to standard biocides in four different Brazilian produced water samples, two from a Southeast Brazil offshore oil field and two from different Northeast Brazil onshore oil fields. Microbiome evaluations were carried out through 16S rRNA amplicon sequencing. To evaluate the biocidal resistance, the Minimum Inhibitory Concentration (MIC) of the standard biocides were analyzed using enriched consortia of SRB and APB from the produced water samples. The data showed important differences in terms of taxonomy but similar functional characterization, indicating the high diversity of the microbiomes. The APB and SRB consortia demonstrated varying resistance levels against the biocides. These results will help to customize biocidal treatments in oil fields.

The article discusses the results of biomonitoring research at the Underground Gas Storage (UGS). Hydrogen sulphide, as one of the products of microbiological reaction and transformation, as well as a product of chemical reactions in rocks, is a subject of interest for global petroleum companies. The materials used in this research work were formation waters and stored natural gas. The biomonitoring of reservoir waters and cyclical analyses of the composition of gas stored at UGS Wierzchowice enabled the assessment of the microbiological condition of the reservoir environment and individual storage wells in subsequent years of operation. Investigations of the formation water from individual wells of the UGS Wierzchowice showed the presence of sulphate reducing bacteria bacteria (SRB), such as Desulfovibrio and Desulfotomaculum genera and bacteria that oxidize sulphur compounds. In the last cycles of UGS Wierzchowice, the content of hydrogen sulphide and sulphides in the reservoir waters ranged from 1.22 to 15.5 mg/dm3. The monitoring of natural gas received from UGS production wells and observation wells, which was carried out in terms of the determination of hydrogen sulphide and organic sulphur compounds, made it possible to observe changes in their content in natural gas in individual storage cycles. In the last cycles of UGS Wierzchowice, the content of hydrogen sulphide in natural gas from production wells ranged from 0.69 to 2.89 mg/dm3, and the content of organic sulphur compounds converted to elemental sulphur ranged from 0.055 to 0.130 mg Sel./Nm3. A higher hydrogen sulphide content was recorded in natural gas from observation wells in the range of 2.02–25.15 mg/Nm3. In order to explain the causes of hydrogen sulphide formation at UGS Wierzchowice, isotopic analyses were performed to determine the isotope composition of δ34SH2S, δ34SSO4, δ18OSO4 in natural gas samples (production and observation wells) and in the deep sample of reservoir water. The results of isotope tests in connection with microbiological tests, chromatographic analyses of sulphur compounds in natural gas collected from UGS Wierzchowice and an analysis of the geological structure of the Wierzchowice deposit allow us to conclude that the dominant processes responsible for the formation of hydrogen sulphide at UGS Wierzchowice are microbiological, consisting of microbial sulphate reduction (MSR). The presented tests allow for the control and maintenance of hydrogen sulphide at a low level in the natural gas received from the Wierzchowice Underground Gas Storage facility.

An anaerobic, rod-shaped, mesophilic, chemolithoautotrophic, sulfate-reducing bacterial strain IOR2T was isolated from a newly found deep-sea hydrothermal vent (OVF, Onnuri Vent Field) area in the central Indian Ocean ridge (11°24'88″ S 66°25'42″ E, 2021 m water depth). The 16S rRNA gene sequence analysis revealed that the strain IOR2T was most closely related to Desulfovibrio senegalensis BLaC1T (96.7%). However, it showed low similarity with the members of the family Desulfovibrionaceae, such as Desulfovibrio tunisiensis RB22T (94.0%), D. brasiliensis LVform1T (93.9%), D. halophilus DSM 5663T (93.7%), and Pseudodesulfovibrio aespoeensis Aspo-2T (93.2%). The strain IOR2T could grow at 23-42°C (optimum 37°C), pH 5.0-8.0 (optimum pH 7.0) and with 0.5-6.5% (optimum 3.0%) NaCl. The strain could use lactate, pyruvate, H2, and glycerol as electron donors and sulfate, thiosulfate, and sulfite as electron acceptors. The major fatty acids of the strain IOR2T were iso-C15:0, iso-C17:0, ante-iso-C15:0, and summed feature 9 (C16:0 methyl/iso-C17:1ω9c). Both the strains IOR2T and BLaC1T could grow with CO2 and H2 as the sole sources of carbon and energy, respectively. Genomic evidence for the Wood-Ljungdahl pathway in both the strains reflects chemolithoautotrophic growth. The DNA G + C content of the strain IOR2T and BLaC1T was 58.1-60.5 mol%. Based on the results of the phylogenetic and physiologic studies, Paradesulfovibrio onnuriensis gen. nov., sp. nov. with the type strain IOR2T (= KCTC 15845T = MCCC 1K04559T) was proposed to be a member of the family Desulfovibrionaceae. We have also proposed the reclassification of D. senegalensis as Paradesulfovibrio senegalensis comb. nov.

Bioscrubbers are an environmental-friendly alternative to valorize SO2 contained in flue gases to obtain elemental sulfur as final value-added product. The bottleneck of a SO2 bioscrubber relies on the heterotrophic reduction of the absorbed SO2 to obtain sulfide. In this study, the performance and stability of a sulfidogenic Upflow Anaerobic Sludge Blanket reactor (UASB) using crude glycerol was investigated during 6 months of operation under variable organic loading rates. The UASB presented a maximum elimination capacity and a sulfate removal efficiency of 110 mg S-SO42- L-1 h-1 and 100%, respectively, when the chemical oxygen demand to sulfate ratio (COD/S-Sulfate) was 8.5 g O2 g-1 S-SO42-. The intermediate compounds identified from crude glycerol degradation were mainly propionic and acetic acid, which varied along the sludge bed together with the pH. Microbial diversity analyses of the sulfidogenic granular sludge showed that the most abundant sulfate reducing genera were Desulfovibrio spp. and Desulfobulbus spp. Methanosaeta and other fermentative/acidogenic microorganisms were also found in significant amounts. Particle size distribution analyses showed that biogas production allowed the granulation of the sulfidogenic sludge, which had an average particle size ranging from 729.3 μm (lower part of the bed) to 391.7 μm (upper part of the test). A short-term pH shock caused a detrimental effect over the system performance due to degranulation. Concomitantly, biogas production was interrupted and acetic acid was accumulated also causing a significant impact on microbial diversity. Unclassified Clostridiales, Desulfovibrio spp. and Desulfobulbus spp. showed a higher resistance to pH shocks.

Fecal microbiota transplantation (FMT) has become an effective strategy to treat metabolic diseases, including type 2 diabetes mellitus (T2DM). We previously reported that the intestinal microbiome had significant difference between individuals with normal glucose tolerance and T2DM in Chinese Kazak ethnic group. In this study, we investigated the effects of transplanted fecal bacteria from Kazaks with normal glucose tolerance (KNGT) in db/db mice. The mice were treated with 0.2 mL of fecal bacteria solution from KNGT daily for 10 weeks. We showed that the fecal bacteria from KNGT successfully colonized in the intestinal tract of db/db mice detected on day 14. In the FMT-treated db/db mice, the levels of fasting blood glucose, postprandial glucose, total cholesterol, triglyceride, and low-density lipoprotein–cholesterol were significantly downregulated, whereas high-density lipoprotein–cholesterol levels were upregulated. In the FMT-treated db/db mice, Desulfovibrio and Clostridium coccoides levels in gut were significantly decreased, but the fecal levels of Akkermansia muciniphila and colon histone deacetylase-3 (HDAC3) protein expression were increased. At 8 weeks, both intestinal target bacteria and HDAC3 were correlated with glycolipid levels; Akkermansia muciniphila level was positively correlated with HDAC3 protein expression (r = +0.620, P = 0.037). Our results suggest that fecal bacteria from KNGT could potentially be used to treat diabetic patients.

This study evaluates the biosynthesis of gold nanoparticle (GNP) using Antarctic bacteria and assesses its potential antibacterial activity on sulfate-reducing bacteria (SRB). The GNPs were biosynthesized at distinct temperatures (4°, 10°, 25°, 30° and 37° C) using bacterial isolate GL1.3, obtained from Antarctic lake water. Biochemical and phylogenetic analysis concluded that the isolate GL1.3 belongs to

This study aimed to design a sulfate-reducing bacteria (SRB)-based wastewater treatment system (SWTS) integrated with a sulfide fuel cell (SFC) as an alternative to the energy-intensive aerobic wastewater treatment process. The result showed that the COD/sulfate ratio and hydraulic retention time (HRT) were two important parameters in a SWTS. The highest COD and sulfate removal efficiency rates were at a HRT of 4 h at a COD/sulfate ratio of 0.67, reaching 83 ± 0.2% and 84 ± 0.4% with sulfate removal rates of 4.087 ± 32 mg SO42−/d, respectively. A microbial analysis revealed that the dominance of nine OTUs belonging to SRB closely affected the high sulfate removal efficiency in the SWTS. At the HRT of 8 h, voltage of 0.02 V and a power density level of 130 mW/m2 were obtained with sulfide removal efficiency of 99 ± 0.5%. These results overall demonstrate that SRB can serve as a green and effective route for wastewater treatment.

Dissimilatory reduction of sulfate to sulfide produces a wide range of sulfur isotope effects, enriching heavy isotopes of sulfur in the remaining sulfate. This isotope fractionation is known to decrease at low sulfate concentrations, which has been used to assess marine sulfate levels throughout the geologic record. So far, the relationships of fractionations to the sulfate concentrations have been examined exclusively in continuous cultures or cell suspensions with continuous removal of the metabolic product sulfide, although sulfate respiration often results in the accumulation of high levels of sulfide in nature. High sulfide levels, as opposed to the effect of sulfate depletion, can increase the magnitude of sulfur isotope fractionation. Thus, I investigate the sulfur isotope fractionation by sulfate reducing bacteria, Desulfovibrio alaskensis and Desulfovibrio sp. DMSS1, in pyruvate batch cultures, where low sulfate but high sulfide concentrations can be achieved. The improved sensitivity of the new analytical method using multicollector ICP-MS makes it easier to measure the sulfur isotope composition of residual sulfate. Both species of Desulfovibrio fractionate sulfur isotopes by 11 to 12‰ with sulfate in excess, but as sulfate is used up in the culture medium, sulfur isotope fractionations decrease down to 0‰ and 3‰ for D. alaskensis and DMSS1, respectively. The results here suggest that elevated sulfide levels are likely secondary to the sulfate availability in determining the magnitude of isotope fractionation. However, the threshold sulfate concentrations at which isotope effect diminishes are apparently different between the two species studied.

The hybrid cluster protein (Hcp) contains a unique 4Fe cluster that is a hybrid of μ-S and μ-O bridges. Escherichia coli Hcp has recently been found to carry NO reductase activity as well as S-nitrosylation activity in NO-based signaling. In other species, the physiological activity has not been established. No reaction mechanism of any Hcp has been proposed. Here, we show that Desulfovibrio vulgaris (Hildenborough) Hcp has nitric oxide reductase activity with benzyl viologen as electron donor. With EPR spectroscopy, we identify three unexpected putative reaction intermediates: both in reduced and oxidized Hcp, dinitrosyl iron complexes are formed. Also, the hybrid cluster in reduced Hcp, but not in oxidized Hcp, binds the product N2 O. Possible implications for a reaction mechanism are discussed.

Desulfovibrio alaskensis G20 biofilms were cultivated on 316 steel, 1018 steel, or borosilicate glass under steady-state conditions in electron-acceptor limiting (EAL) and electron-donor limiting (EDL) conditions with lactate and sulfate in a defined medium. Increased corrosion was observed on 1018 steel under EDL conditions compared to 316 steel, and biofilms on 1018 carbon steel under the EDL condition had at least twofold higher corrosion rates compared to the EAL condition. Protecting the 1018 metal coupon from biofilm colonization significantly reduced corrosion, suggesting that the corrosion mechanism was enhanced through attachment between the material and the biofilm. Metabolomic mass spectrometry analyses demonstrated an increase in a flavin-like molecule under the 1018 EDL condition and sulfonates under the 1018 EAL condition. These data indicate the importance of S-cycling under the EAL condition, and that the EDL is associated with increased biocorrosion via indirect extracellular electron transfer mediated by endogenously produced flavin-like molecules.

This study aimed to investigate the graphene oxide (GO) conversion by the sulfate-reducing biocathode and its modified effects on performance of the microbial electrolysis cell (MEC). Biocathodes were acclimated with autotrophic sulfate-reducing cultures using medium containing 500 mg L−1 sulfate. Sulfate reductive rate in the MEC was 230 and 135 g m−3 d−1, respectively, with and without 30 mg L−1 GO addition. Raman measurements showed that GO was efficiently reduced to graphene by the biocathode within 24 h. Higher electrochemical activity and smaller charge transfer resistance were detected on biofilm with GO affected. With high electrical conductivity of 307 ± 36 μS cm−1, pili substance were observed on GO affected biofilm. As dominated by Desulfovibrio sp., the biocathode could use GO as the sole electron acceptor and maintained high activity. The results from this study should provide useful information for applications of nanomaterials in the biocathode MEC.

A psychrotolerant non-spore-forming sulfate-reducing bacterium, strain K3ST, was isolated from a Yamal Peninsula cryopeg within permafrost. Strain K3STgrew at subzero temperatures and required Na+for growth. The new bacterium was able to use lactate, formate, pyruvate, fumarate, alanine, ethanol and molecular hydrogen as electron donors in the presence of sulfate, and used sulfate, sulfite, thiosulfate and elemental sulfur as electron acceptors in the presence of lactate. Fe(III)-citrate and Fe(III)-EDTA were reduced without visible growth. Major polar lipids were рhosphatidylserine, рhosphatidylethanolamine, phospholipids, cardiolipin and aminolipid; major cellular fatty acids were C16 : 1ω7, C16 : 0and C18 : 1ω7; and the predominant isoprenoid quinone was MK-6 (H2). The genomic DNA G+C content was found to be 42.33 mol%. Phylogenetic analysis showed that the closest relative of the new isolate wasDesulfovibrio ferrireducensstrain 61Twith 97.1 % 16S rRNA gene similarity. In addition, the ANI value between strain K3STandD. ferrireducens61Twas 82.1 %. On the basis of the genomic and polyphasic taxonomy data of strain K3ST, we conclude that the strain is a representative of a novel speciesDesulfovibriogilichinskyisp. nov. (=VKM B-2877T=DSM 100341T).

Sulfur oxide emissions can lead to acidic precipitation and health concerns. Flue gas desulfurization (FGD) systems treat these emissions generating a wastewater with high-sulfate content. This work is the first attempt to treat this effluent with bioelectrochemical systems (BES) in order to recover elemental sulfur, a technology that allows the treatment of several wastewaters that lack of electron donor. The sulfate treatment and elemental sulfur recovery have been studied in a biocathode with simultaneous sulfate reduction to sulfide and partial sulfide oxidation, comparing the performance obtained with synthetic and real wastewater. A decrease of the sulfate removal rate (SRR) from 108 to 73mgS-SO42-L-1d-1 was observed coupled to an increase in the elemental sulfur recovery from 1.4 to 27mgS-S0L-1d-1. This elemental sulfur recovered as a solid from the real wastewater represented a 64% of the theoretical elemental sulfur produced (the elemental sulfur corresponded to a 72% of the solid weight). In addition, microbial communities analysis of the membrane and cathode biofilms and planktonic biomass showed that the real wastewater allowed a higher growth of sulfur oxidizing bacteria (SOB) adapted to more complex waters as Halothiobacillus sp. while decreasing the relative abundance of sulfate reducing bacteria (SRB).

Chloroform (CF) can undergo reductive dechlorination to dichloromethane, chloromethane, and methane. However, competition for hydrogen (H2 ), the electron-donor substrate, may cause poor dechlorination when multiple electron acceptors are present. Common acceptors in anaerobic environments are nitrate (NO3 - ), sulfate (SO4 2- ), and bicarbonate (HCO3 - ). We evaluated CF dechlorination in the presence of HCO3 - at 1.56 e- Eq/m2 -day, then NO3 - at 0.04-0.15 e- Eq/m2 -day, and finally NO3 - (0.04 e- Eq/m2 -day) along with SO4 2- at 0.33 e- Eq/m2 -day in an H2 -based membrane biofilm reactor (MBfR). When the biofilm was initiated with CF-dechlorination conditions (no NO3 - or SO4 2- ), it yielded a CF flux of 0.14 e- Eq/m2 -day and acetate production via homoacetogenesis up to 0.26 e- eq/m2 -day. Subsequent addition of NO3 - at 0.05 e- Eq/m2 -day maintained full CF dechlorination and homoacetogenesis, but NO3 - input at 0.15 e- Eq/m2 -day caused CF to remain in the reactor's effluent and led to negligible acetate production. The addition of SO4 2- did not affect CF reduction, but SO4 2- reduction significantly altered the microbial community by introducing sulfate-reducing Desulfovibrio and more sulfur-oxidizing Arcobacter. Dechloromonas appeared to carry out CF dechlorination and denitrification, whereas Acetobacterium (homoacetogen) may have been involved with hydrolytic dechlorination. Modifications to the electron acceptors fed to the MBfR caused the microbial community to undergo changes in structure that reflected changes in the removal fluxes.

For comprehensive insights into the influences of sulfate on performance, microbial community and metabolic pathways in the acidification phase of a two-phase anaerobic system, a laboratory-scale acidogenic bioreactor was continuously operated to treat wastewater with elevated sulfate concentrations from 2000 to 14000 mg/L. The results showed that the acidogenic bioreactor could achieve sulfate reduction efficiency of greater than 70% for influent sulfate content less than 12000 mg/L. Increased sulfate induced the accumulation of volatile fatty acids (VFAs), especially propionate and butyrate, which was the primary negative effects to system performance under the high-sulfate environment. High-throughput sequencing coupled with PICRUSt2 uncovered that the accumulation of VFAs was triggered by the decreasing of genes encoding short-chain acyl-CoA dehydrogenase (EC: 1.3.8.1), regulating the transformation of propanoyl-CoA to propenoyl-CoA and butanoyl-CoA to crotonyl-CoA of propionate and butyrate oxidation pathways, which made these two process hardly proceed. Besides, genes encoding (EC: 1.3.8.1) were mainly carried by order Clostridiales. Desulfovibrio was the most abundant sulfate-reducing bacteria and identified as the primary host of dissimilatory sulfate reduction functional genes. Functional analysis indicated the dissimilatory sulfate reduction process predominated under a low sulfate environment, but was not favored under the circumstance of high-sulfate. With the increase of sulfate, the assimilatory sulfate reduction process finally overwhelmed dissimilatory as the dominant sulfate reduction pathway in acidogenic bioreactor.

Microbiologically influenced corrosion (MIC) is recognized as a considerable threat to carbon steel asset integrity in the oil and gas industry. There is an immediate need for reliable and broadly applicable methods for detection and monitoring of MIC. Proteins associated with microbial metabolisms involved in MIC could serve as useful biomarkers for MIC diagnosis and monitoring. A proteomic study was conducted using a lithotrophically-grown bacterium Desulfovibrio ferrophilus strain IS5, which is known to cause severe MIC in seawater environments. Unique proteins, which are differentially and uniquely expressed during severe microbial corrosion by strain IS5, were identified. This includes the detection of a multi-heme cytochrome protein possibly involved in extracellular electron transfer in the presence of the carbon steel. Thus, we conclude that this newly identified protein associated closely with severe MIC could be used to generate easy-to-implement immunoassays for reliable detection of microbiological corrosion in the field.

Sulfate-reducing bacteria (SRB) are culprits for microbiologically influenced corrosion, and biofilms are believed to play essential roles in the corrosion induced by SRB. However, little is known about the regulation of SRB biofilms. Quorum sensing signal molecules acyl-homoserine lactones (AHLs) and autoinducer-2 (AI-2) regulate biofilm formation of many bacteria. In this study, the production of AHLs and AI-2 by one SRB strain, Desulfovibrio sp. Huiquan2017, was detected, and the effect of exogenous AI-2 on bacterial biofilm formation was discussed. It was found that the cell-free supernatants of Desulfovibrio sp. Huiquan2017 induced luminescence in a ∆luxS mutant strain Vibrio harveyi BB170, indicating the production of functional AI-2 by the bacterium. In the presence of exogenous AI-2, the growth of Desulfovibrio sp. Huiquan2017 and early biofilm formation were not affected, but the later stage of biofilm development was inhibited significantly. The biofilms became looser, smaller, and thinner, and contained less bacteria and extracellular polymeric substances (EPS). The inhibition effect of AI-2 on the biofilm development of Desulfovibrio sp. Huiquan2017 was mainly achieved through reducing the amount of EPS in biofilms. These findings shed light on the biofilm regulation of SRB.

Methane is a powerful greenhouse gas but the microbial diversity mediating methylotrophic methanogenesis is not well-characterized. One overlooked route to methane is via the degradation of dimethylsulfide (DMS), an abundant organosulfur compound in the environment. Methanogens and sulfate-reducing bacteria (SRB) can degrade DMS in anoxic sediments depending on sulfate availability. However, we know little about the underlying microbial community and how sulfate availability affects DMS degradation in anoxic sediments. We studied DMS-dependent methane production along the salinity gradient of the Medway Estuary (UK) and characterized, for the first time, the DMS-degrading methanogens and SRB using cultivation-independent tools. DMS metabolism resulted in high methane yield (39%-42% of the theoretical methane yield) in anoxic sediments regardless of their sulfate content. Methanomethylovorans, Methanolobus and Methanococcoides were dominant methanogens in freshwater, brackish and marine incubations respectively, suggesting niche-partitioning of the methanogens likely driven by DMS amendment and sulfate concentrations. Adding DMS also led to significant changes in SRB composition and abundance in the sediments. Increases in the abundance of Sulfurimonas and SRB suggest cryptic sulfur cycling coupled to DMS degradation. Our study highlights a potentially important pathway to methane production in sediments with contrasting sulfate content and sheds light on the diversity of DMS degraders.

Both biological sulfate reduction process and sulfur reduction process are attractive technologies for metal-laden wastewater treatment. However, the acidity stress of metal-laden wastewater could affect the sulfidogenic performance and the microbial community, weaken the stability, efficiency and cost-effectiveness of the biological sulfidogenic processes (BSP). In this study, long-term lab-scale trials were conducted with a sulfate-reducing bioreactor and a sulfur-reducing bioreactor to evaluate the effects of acidity on sulfidogenic activities and the microbial community of the BSP. In the 300-day trial, the sulfate-reducing bacteria (SRB)-driven BSP was stable in terms of sulfidogenic performance and microbial community with the decline of pH, while the sulfur-reducing bacteria (S0RB)-driven BSP achieved high-rate and low-cost sulfide production under neutral conditions but unstable under acidic conditions. With the decline of pH, the sulfide production rate (SPR) of the SRB-driven BSP stably increased from 30 to 83 mg S/L-h; while it decreased from 56 to 37 mg S/L-h in the S0RB-driven BSP with high fluctuation. The results of estimation were consistent with the thermodynamical calculations, in which the sulfur reduction process showed a better performance at pH 5-7, while the sulfate reduction process might gain more energy when pH

Quality of the granular sludge developed during the start-up of anaerobic up-flow sludge bed reactors is of crucial importance to ensure the process feasibility of treating industrial wastewater such as those containing solvents. In this study, the microbial granule formation from suspended-growth biomass was investigated in two chitosan-assisted reactors. These reactors operated mimicking industrial sites working with night closures treating a mixture of ethanol, ethyl acetate, and 1-ethoxy-2-propanol. Each reactor operated under different hydrodynamic regimes typical from UASB (R1: &lt, 0.15 m h−1) and EGSB (R2: 3 m h−1). High soluble COD removal efficiencies (&gt, 90%) accompanied by rapid formation of robust anaerobic granules were achieved at both up-flow velocity levels. After three weeks from the start-up, mean size diameters of 475 µm and 354 µm were achieved for R1 and R2, respectively. The performance of the process was found to be stable for the whole operational period of 106 days treating intermittent OLR up to 13 kg COD m−3 d−1. A memory dose of chitosan at day 42 was beneficial to guarantee good quality of the granules by offsetting the negative impact of intermittent water supply on the granular size. Methanocorpusculum was identified as the dominant archaea at both up-flow velocities. Acetobacterium, Geobacter and Desulfovibrio bacteria were also abundant, demonstrating its role on the degradation of light-oxygenated solvents.

Parkinson’s disease (PD) is the most prevalent movement disorder known and predominantly affects the elderly. It is a progressive neurodegenerative disease wherein α-synuclein, a neuronal protein, aggregates to form toxic structures in nerve cells. The cause of Parkinson’s disease (PD) remains unknown. Intestinal dysfunction and changes in the gut microbiota, common symptoms of PD, are evidently linked to the pathogenesis of PD. Although a multitude of studies have investigated microbial etiologies of PD, the microbial role in disease progression remains unclear. Here, we show that Gram-negative sulfate-reducing bacteria of the genus Desulfovibrio may play a potential role in the development of PD. Conventional and quantitative real-time PCR analysis of feces from twenty PD patients and twenty healthy controls revealed that all PD patients harbored Desulfovibrio bacteria in their gut microbiota and these bacteria were present at higher levels in PD patients than in healthy controls. Additionally, the concentration of Desulfovibrio species correlated with the severity of PD. Desulfovibrio bacteria produce hydrogen sulfide and lipopolysaccharide, and several strains synthesize magnetite, all of which likely induce the oligomerization and aggregation of α-synuclein protein. The substances originating from Desulfovibrio bacteria likely take part in pathogenesis of PD. These findings may open new avenues for the treatment of PD and the identification of people at risk for developing PD.

Prodigiosin is a red pigment produced by Serratia marcescens with anticancer, antimalarial, and antibacterial effects. In this study, we extracted and identified a red pigment from a culture of S. marcescens strain ZPG19 and investigated its effect on the growth performance and intestinal microbiota of Kunming mice. High-performance liquid chromatography/mass spectrometry revealed that the pigment had a mass-to-charge ratio (m/z) of 324.2160, and thus it was identified as prodigiosin. To investigate the effect of prodigiosin on the intestinal microbiota, mice (n = 5) were administered 150 μg/kg/d prodigiosin (crude extract, 95% purity) via the drinking water for 18 days. Administration of prodigiosin did not cause toxicity in mice. High-throughput sequencing analysis revealed that prodigiosin altered the cecum microbiota abundance and diversity, the relative abundance of Desulfovibrio significantly decreased, whereas Lactobacillus reuteri significantly increased. This finding indicates that oral administration of prodigiosin has a beneficial effect on the intestinal microbiota of mice. As prodigiosin is non-toxic to mouse internal organs and improves the mouse intestinal microbiota, we suggest that it is a promising candidate drug to treat intestinal inflammation.

Uranium in groundwater during uranium mining activities urgently needs to be remediated through effective and environmental-friendly approaches. The reduction and immobilization of soluble U(VI) using biogenic carboxymethyl cellulose modified iron sulfide complex (biogenic CMC-FeS complex) is one of the emerging and innovative methods. However, its removal mechanism is largely unknown. Here, biogenic CMC-FeS complex with extracellular polymeric substances (EPS) and CMC was successfully synthesized by sulfate-reducing bacteria (SRB) and showed highly dispersible capacity. The tryptophan and tyrosine, which were the main components in EPS produced by SRB on CMC-FeS surface, significantly increased the U(VI) removal capacity of the biogenic CMC-FeS complex compared with chemically synthesized CMC-FeS. U(VI) removal was attributed to the adsorption of soluble U(VI) by ≡ FeO + , CMC, tryptophan, and tyrosine on the biogenic CMC-FeS complex, following its reduction by S2-, S22- and Fe2+. Moreover, biogenic CMC-FeS complex with CMC-to-FeS molar ratio of 0.0005 performed well in the presence of bicarbonate (5 mM), humic acid (10 mg/L), or co-existing cations such as Pb2+, Ni2+, Cd2+, Mn2+, and Cu2+ (200 ug/L) at pH 7.0, and displayed relatively high oxidation resistance and stability ability. This work provides an in-depth understanding of the biogenic CMC-FeS complex for the U(VI) removal and contributes to the development of cost-effective U(VI) remediation technologies.

Tetrabromobisphenol A (TBBPA) has aroused widespread pollution in industrial wastewater. Microbial fuel cell (MFC) was proved powerful in organics degradation and simultaneous resource recovery during wastewater treatment. However, the TBBPA biotransformation potential, pathway and the related molecular mechanism remain poorly understood. In this study, the enhanced degradation and detoxification performance of TBBPA in MFC anode was confirmed, evidenced by the shorter degradation period (2.3 times shorter) and less generation of bisphenol A. UPLC-QTOF-MS analysis verified TBBPA metabolism went through reductive debromination, hydrolytic debromination, oxidative ring cleavage and o-methylation. Accompanied with those biochemical processes, the metabolites underwent dynamic changes. The distinctly decreased abundance and fewer interactions with other functional genera for the potential reductive dehalogenators (Pseudomonas, etc.) possibly led to the suppressed reductive debromination (5.1%) in the closed bioanode. Otherwise, the more abundant potential function bacteria with more collaborated interrelations, including hydrolytic dehalogenators (Acinetobacter, etc.), aromatics degrading bacteria (Geobacter, Holophaga, etc.) and electroactive bacteria (Geobacter, Desulfovibrio, etc.) made great sense to the enhanced hydrolytic debromination and detoxification of TBBPA. This study revealed that MFC anode was beneficial to TBBPA degradation and provided theoretical support for the decomposition and transformation of micro-pollutants in the municipal sewage treatment coupled with MFC process.

In this study, the long-term performance and microbial dynamics of an Upflow Anaerobic Sludge Blanket (UASB) reactor targeting sulfate reduction in a SOx emissions treatment system were assessed using crude glycerol as organic carbon source and electron donor under constant S and C loading rates. The reactor was inoculated with granular sludge obtained from a pulp and paper industry and fed at a constant inlet sulfate concentration of 250 mg S-SO42−L−1 and a constant C/S ratio of 1.5 ± 0.3 g Cg−1 S for over 500 days. Apart from the regular analysis of chemical species, Illumina analyses of the 16S rRNA gene were used to study the dynamics of the bacterial community along with the whole operation. The reactor was sampled along the operation to monitor its diversity and the changes in targeted species to gain insight into the performance of the sulfidogenic UASB. Moreover, studies on the stratification of the sludge bed were performed by sampling at different reactor heights. Shifts in the UASB performance correlated well with the main shifts in microbial communities of interest. A progressive loss of the methanogenic capacity towards a fully sulfidogenic UASB was explained by a progressive wash-out of methanogenic Archaea, which were outcompeted by sulfate-reducing bacteria. Desulfovibrio was found as the main sulfate-reducing genus in the reactor along time. A progressive reduction in the sulfidogenic capacity of the UASB was found in the long run due to the accumulation of a slime-like substance in the UASB.

Funding Information: We gratefully acknowledge the contribution of Marielle Bauzan for the cultures in syntrophy and Yann Denis for transcriptomic facilities and Grant Zane (Judy Wall laboratory) for providing us the GZ3621Orp ::mini‐Tn5 strain. The authors are also grateful to Emilien Etienne and the EPR facilities available at the national EPR network RENARD (IR CNRS 3443) and the Aix‐Marseille University EPR center. We also thank Martine Company for technical assistance, Katia Villion for her help on the project during its school program, Béatrice Py and Bruno Guigliarelli for insightful discussions. The French National Research Agency (ANR) funded this research project (ANR‐12‐ISV8‐0003‐01). The project leading to this publication has received funding from the Excellence Initiative of Aix‐Marseille University—A*MIDEX, a French “Investissements d'Avenir” programme and is part of the Institute of Microbiologies and Biotechnology—IM2B (AMX‐19‐IET‐006). This work was supported by Fundação para a Ciência e Tecnologia (FCT) (grant to SRP, FCT‐ANR/BBB‐MET/0023/2012) and by the Belgian Federal Science Policy Office (Belspo) (IAP7/44, iPROS project). SRP was also supported by the Applied Molecular Biosciences Unit‐UCIBIO financed by national funds from FCT (UIDP/04378/2020 and UIDB/04378/2020). This article is based upon work from COST Action CA15133, supported by COST (European Cooperation in Science and Technology). Made available in DSpace on 2021-11-29T23:39:30Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-07 publishersversion published

A novel mesophilic sulfate-reducing bacterium, strain HN2T, was isolated from groundwater sampled from the subsurface siliceous mudstone of the Wakkanai Formation located in Horonobe, Hokkaido, Japan. The bacterium was Gram-negative and vibrio-shaped, and its motility was conferred by a single polar flagellum. Cells had desulfoviridin. Catalase and oxidase activities were not detected. It grew in the temperature range of 25–40 °C (optimum, 35 °C) and pH range of 6.3–8.1 (optimum, pH 7.2–7.6). It used sulfate, thiosulfate, dimethyl sulfoxide, anthraquinone-2,6-disulfonate, Fe3+, and manganese oxide, but not elemental sulfur, nitrite, nitrate, or fumarate as electron acceptors. The strain showed weak growth with sulfite as the electron acceptor. Fermentative growth with pyruvate, lactate and cysteine was observed in the absence of sulfate, but not with malate or fumarate. NaCl was not required, but the strain tolerated up to 40 g l–1. Strain HN2T did not require vitamins. The major cellular fatty acids were iso-C15 : 0 (23.8 %), C18 : 1 ω9t (18.4 %), C18 : 0 (15.0 %), C16 : 0 (14.5 %), and anteiso-C17 :0 (10.1 %). The major respiratory quinone was menaquinone MK-6(H2). The G+C content of the genomic DNA was 56.7 mol%. Based on 16S rRNA gene sequence analysis, the closest phylogenetic relative of strain HN2T is Desulfovibrio psychrotolerans JS1T (97.0 %). Digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) values of the strains HN2T and D. psychrotolerans JS1T were 22.2 and 79.8 %, respectively. Based on the phenotypic and molecular genetic evidence, we propose a novel species, D. subterraneus sp. nov. with the type strain HN2T (=DSM 101010T=NBRC 112213T).

Sulfate-reducing bacteria (SRB) play an important role in sulfur, iron and carbon cycling. The majority of studies have illustrated the role of SRB in biogeochemical cycling in pure cultures. In this study, we established three SRB enrichment cultures (designated HL, NB and WC) from different paddy soils and conducted a transcriptomic analysis of their metabolic characteristics under sulfate and sulfate-free conditions. In the HL cultures, there was no sulfate consumption but ferrihydrite was reduced. This indicated that bacteria in the HL samples can reduce ferrihydrite and preferentially utilize ferrihydrite as the electron acceptor in the absence of both ferrihydrite and sulfate. Sulfate consumption was equal in the NB and the WC cultures, although more ferrihydrite was reduced in the NB cultures. Transcriptomics analysis showed that (i) upregulation of O-acetylserine sulfhydrylase gene expression indicating sulfate assimilation in the WC samples; (ii) the energy conservation trithionate pathway is commonly employed by SRB and (iii) sulfate not only enhanced iron reduction by its conversion to sulfide but also promoted enzymatic electron transfer via c-type cytochromes.

Made available in DSpace on 2021-06-25T10:25:46Z (GMT). No. of bitstreams: 0 Previous issue date: 2021-06-01 The down flow structured bed bioreactor (DFSBR) was applied to treat synthetic acid mine drainage (AMD) to reduce sulfate, increase the pH and precipitate metals in solutions (Co, Cu, Fe, Mn, Ni and Zn) using vinasse as an electron donor for sulfate-reducing bacteria (SRB). DFSBR achieved sulfate removal efficiencies between 55 and 91%, removal of Co and Ni were obtained with efficiencies greater than 80%, while Fe, Zn, Cu and Mn were removed with average efficiencies of 70, 80, 73 and 60%, respectively. Sulfate reduction increased pH from moderately acidic to 6.7–7.5. Modelling data confirmed the experimental results and metal sulfide precipitation was the mainly responsible for metal removal. The main genera responsible for sulfate and metal reduction were Geobacter and Desulfovibrio while fermenters were Parabacteroides and Sulfurovum. Moreover, in syntrophism with SRB, they played an important role in the efficiency of metal and sulfate removal. Biological Processes Laboratory (LPB) São Carlos School of Engineering (EESC) University of São Paulo (USP), Av. João Dagnone, 1100, Santa Angelina Institute of Geosciences and Exact Sciences (IGCE) São Paulo State University (UNESP), Av. 24 A, 1515 - Bela Vista Environmental Microbiology Laboratory Institute of Science and Technology Federal University of Alfenas Rodovia José Aurélio Vilela, 11999 (BR 267 Km 533) Cidade Universitária Institute of Geosciences and Exact Sciences (IGCE) São Paulo State University (UNESP), Av. 24 A, 1515 - Bela Vista

Elemental sulfur reduction has recently been demonstrated to be a promising sulfidogenic process for cost-effective treatment of various wastewaters. However, it remains unknown if sulfur reduction is capable of pharmaceuticals and personal care products (PPCPs) removal. Thus, this study investigated the feasibility of such process to remove PPCPs and how PPCPs influence the system performance during a long-term operation. Triclosan (TCS), a typical broad-spectrum antibacterial agent and a ubiquitous emerging organic contaminant in environments was chosen as the model compound. Results showed that TCS was removed principally via fast sorption followed by slow biodegradation. Amides, polysaccharides and hydroxyl groups in extracellular polymeric substances (EPS) provided adsorption sites. Both metabolism and co-metabolism of TCS with organic carbon removal were responsible for TCS biodegradation. Reductive dechlorination and hydroxylation of TCS were inferred during TCS biodegradation. The genera Georgenia, Soehngenia, Comamonas, Pseudomonas, Desulfovibrio and Sulfurospirillum were the potential TCS degraders in the sulfur-reducing system. Additionally, the presence of TCS at environmentally relevant concentrations did not negatively impact the performance of organic carbon removal, but altered functional bacteria groups (i.e. fermentative and sulfur-reducing genera). In summary, the sulfur-reducing system could be sufficiently robust to transform organohalide antimicrobials of PPCPs (e.g. triclosan) without compromising the performance. Nanyang Technological University The authors acknowledge the financial support of Advanced Environmental Biotechnology Centre, Nanyang Environment and Water Research Institute (NEWRI), Nanyang Technological University.

This work was funded by the ERDF-financed Grant CGL2014-59616-R (80% funding by FEDER) , (Ministerio de Ciencia e Innovacion, Espana) as well as by an FPU 14/04263 ("Formacion de Profesorado Universitario") grant to the first author from the Spanish Ministry (Ministerio de Educacion Cultura y Deporte, MECD) ., Uranium (U) is the most hazardous radionuclide in nuclear waste and its harmful effects depend on its mobility and bioavailability. Microorganisms can affect the speciation of radionuclides and their migration in Deep Geological Repositories (DGR) for high level radioactive waste (HLW) storage. Consequently, a better understanding of microbe-radionuclide interactions within a DGR concept is essential for a safe storage. With that in mind, bentonite microcosms amended with uranyl nitrate and glycerol-2-phosphate were incubated for six months under anoxic conditions. Post-incubation 16S rRNA gene sequencing revealed high microbial diversities including glycerol oxidizers such as Clostridium and Desulfovibrio and nitrate reducers (Limnobacter and Brevundimonas). In addition, uranium-reducing bacteria (Desulfovibrio and Pseudomonas) were highly enriched in glycerol-2-phosphate‑uranium amended microcosms. These bacteria may contribute to uranium immobilization through enzymatic reduction and/or biomineralization. Scanning electron microscopy of colored spots on the surface of the bentonite in the microcosms indicated the probable formation of Mn(IV) oxides likely through the activity of Mn(II)-oxidizing microbes. This could affect the biogeochemical cycle of U(VI) by concentrating and immobilizing this element in the bentonites. Finally, X-ray diffraction determined a high structural stability of bentonites. The outputs of this study help to predict the impact of microbial activity (e.g. smectite alteration, metal corrosion, and radionuclides mobilization) on the long-term performance of a DGR and to develop appropriate waste treatments, remediation, and management strategies., European Commission CGL2014-59616-R, German Research Foundation (DFG) FPU 14/04263

Trichloroethylene (TCE) is one of the most common groundwater pollutants. It is carcinogenic, teratogenic, mutagenic and poses a serious threat to human health and the environment. Therefore, reducing the environmental toxicity of TCE is of great significance. Anaerobic sludge was cultured and acclimated in an upflow anaerobic sludge blanket (UASB) reactor in this study. The Chemical Oxygen Demand (COD) concentration of the influent was approximately 2500 mg L−1, and the TCE concentration of the influent ranged from 1.46 mg L−1 to 73 mg L−1. After biodegradation of the anaerobic microflora, the COD removal rate was approximately 85%, and the TCE removal rate was over 85%. The microbial community of anaerobic sludge was analysed by 16 S rDNA clone libray and 454 high-throughput sequencing. Through analysis of the sequencing results, we found that there were a variety of acid-forming bacteria, anaerobic dechlorinating bacteria, and methanogenic bacteria. Based on the analysis of microflora function, it was speculated that the TCE metabolic pathway took place in UASB reactors. Desulfovibrio and Syntrophobacter provided an anaerobic environment, and acid-forming bacteria metabolise organic compounds into hydrogen. With Dehalobacter and Geobacter, TCE as an electron acceptor is dechlorinated and reduced under the anaerobic environment, in which hydrogen acts as an electron donor. By this, we clarified the metabolic pathway for improving TCE bioremediation.

In this study, the effects of organic sulfur on anaerobic biological processes were investigated by operating two up-flow anaerobic sludge blanket (UASB) reactors with sodium dodecylbenzene sulfonate (SDBS) as a representative of organic sulfur. The results indicated that the specific methanogenic activity (SMA) and chemical oxygen demand (COD) removal efficiency of R2 (with SDBS added) were higher than those of R1 (without SDBS) when the COD/SO42− ratio was above 5.0. However, when the COD/SO42− ratio was lower than 5.0, the sulfate reduction efficiency of R2 was higher than that of R1. These results and the observed SDBS transformation efficiency in anaerobic reactors indicate that low concentrations of SDBS accelerate methane production and the continuous accumulation of SDBS does not weaken the reduction of sulfate. Similarly, the calculated electron flux for a COD/SO42− ratio of 1.0 indicates that the utilization intensity of electrons by sulfate-reducing bacteria (SRB) in R2 was 36.48% higher than that of SRB in R1 and exceeded that of methane-producing archaea (MPA) under identical working conditions. Moreover, the addition of SDBS in R2 made sulfidogenesis the dominant reaction at low COD/SO42−, and Methanobacterium and Methanobrevibacter with H2/CO2 as the substrate and Desulfomicrobium were the dominant MPA and SRB, respectively. However, methanogenesis was still the dominant reaction in R1, and Methanosaeta with acetic acid as the substrate and Desulfovibrio were the dominant MPA and SRB, respectively.

Sulfate-reducing microorganisms (SRM) are found in multiple environments and play a major role in global carbon and sulfur cycling. Because of their growth capabilities and association with metal corrosion, controlling the growth of SRM has become of increased interest. One such mechanism of control has been the use of molybdate (MoO42−), which is thought to be a specific inhibitor of SRM. The way in which molybdate inhibits the growth of SRM has been enigmatic. It has been reported that molybdate is involved in a futile energy cycle with the sulfate-activating enzyme, sulfate adenylyl transferase (Sat), which results in loss of cellular ATP. However, we show here that a deletion of this enzyme in the model SRM, Desulfovibrio vulgaris Hildenborough, remained sensitive to molybdate. We performed several subcultures of the ∆sat strain in the presence of increasing concentrations of molybdate and obtained a culture with increased resistance to the inhibitor (up to 3 mM). The culture was re-sequenced and three single nucleotide polymorphisms (SNPs) were identified that were not present in the parental strain. Two of the SNPs seemed unlikely candidates for molybdate resistance due to a lack of conservation of the mutated residues in homologous genes of closely related strains. The remaining SNP was located in DVU2210, a protein containing two domains: a YcaO-like domain and a tetratricopeptide-repeat domain. The SNP resulted in a change of a serine residue to arginine in the ATP-hydrolyzing motif of the YcaO-like domain. Deletion mutants of each of the three genes apparently enriched with SNPs in the presence of inhibitory molybdate and combinations of these genes were generated in the Δsat and wild-type strains. Strains lacking both sat and DVU2210 became more resistant to molybdate. Deletions of the other two genes in which SNPs were observed did not result in increased resistance to molybdate. YcaO-like proteins are distributed across the bacterial and archaeal domains, though the function of these proteins is largely unknown. The role of this protein in D. vulgaris is unknown. Due to the distribution of YcaO-like proteins in prokaryotes, the veracity of molybdate as a specific SRM inhibitor should be reconsidered.

Tanneries create a serious threat to the environment by generating a significant amount of toxic metal-containing solid waste. This study deals with the application of bio-electrokinetic remediation (Bio-EK) of tannery effluent contaminated soil (TECS). Metagenomes representing the TECS sample were sequenced using the Illumina HiSeq platform. The bioreduction of hexavalent chromium Cr(VI)to trivalent chromium Cr (III) was achieved by BIO-EK techniques. NGS-data (Next Generation Sequencing) analysis was revealed that Proteobacteria, Firmicutes, Bacteroidetes, Actinobacteria, and Planctomycetes were identified in the bio-electrokinetic system. Proteobacteria are responsible for the bioreduction of chromium hexavalent by the formation of FeS particles. The bio-generated FeS particles can be reduced the toxic chromium (VI) to non–toxic chromium (III) in soil. Simultaneously total chromium and organic content were significantly removed in BIO-EK (40 and 290 mg kg−1) when compared to control soil (182 and 240 mg kg−1). The presence of pollutant degrading microbes such as Desulfovibrio, Pseudomonas, Bacillus, Clostridium, Halanaerobium enhanced the bioreduction of the chromium during the electrokinetic remediation. This study can be claimed that the microbial cultures assisted electrokinetic remediation of total chromium, organic and iron in the tannery effluent contaminated soil was one of the suitable efficient techniques. In addition, the viability of the new combination technology developed (Electrokinetic + Bio) to treat low-permeability polluted soils was demonstrated.

Sulfate-reducing bacteria (SRB) are key players in many passive and active systems dedicated to the treatment of hydrometallurgical leachates. One of the main factors reducing the efficiency and activity of SRB is the low pH and poor nutrients in leachates. We propose an innovative solution utilizing biogenic ammonia (B-NH3), produced by urea degrading bacteria, as a pretreatment agent for increasing the pH of the leachate and spontaneously stimulating SRB activity via bacterial secondary metabolites. The selected strain, Ochrobactrum sp. POC9, generated 984.7 mg/L of ammonia in 24 hours and promotes an effective neutralization of B-NH3. The inferred metabolic traits indicated that the Ochrobactrum sp. POC9 can synthesize a group of vitamins B, and the production of various organic metabolites was confirmed by GC-MS analysis. These metabolites comprise alcohols, organic acids, and unsaturated hydrocarbons that may stimulate biological sulfate reduction. With the pretreatment of B-NH3, sulfate removal efficiency reached ∼92.3% after 14 days of incubation, whereas SRB cell count and abundance were boosted (∼107 cell counts and 88 OTUs of SRB) compared to synthetic ammonia (S-NH3) (∼103 cell counts and 40 OTUs of SRB). The dominant SRB is Desulfovibrio in both S-NH3 and B-NH3 pretreated leachate, however, it belonged to two different clades. By reconstructing the ecological network, we found that B-NH3 not only directly increases SRB performance but also promotes other strains with positive correlations with SRB.