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CIB1 is a homolog of calmodulin that regulates cell adhesion, migration, and differentiation. It has been considered as an oncogene in many tumor cells; however, its role in lung adenocarcinoma (LAC) has not been studied. In this study, the expression levels of CIB1 in LAC tissues and adjacent normal tissues were examined by immunohistochemistry, and the relationship between CIB1 expression and patient clinicopathological characteristics was analyzed. The effects of CIB1 on epithelial–mesenchymal transition (EMT), migration, and metastasis of LAC cells were determined in vitro and vivo. Proteins interacting with CIB1 were identified using electrospray mass spectrometry (LS-MS), and CHIP was selected in the following assays. Carboxyl-terminus of Hsp70-interacting protein (CHIP) is a ubiquitin E3 ligase. We show that CHIP can degrade CIB1 via promoting polyubiquitination of CIB1 and its subsequent proteasomal degradation. Besides, lysine residue 10 and 65 of CIB1 is the ubiquitinated site of CIB1. Furthermore, CHIP-mediated CIB1 downregulation is critical for the suppression of metastasis and migration of LAC. These results indicated that CHIP-mediated CIB1 ubiquitination could regulate epithelial–mesenchymal and tumor metastasis in LAC.

A novel, moderately thermophilic, Gram-stain-negative bacterium, designated strain J18T, was isolated from a water-flooded oil reservoir. Cells were aerobic, oxidase- and catalase-positive, with a polar flagellum. Growth occurred at 35–60 °C and at pH 6–8.5. The respiratory quinones were ubiquinone 8 and ubiquinone 9. The dominant cellular fatty acids were C16 : 0, C17 : 0 cyclo, C19 : 0 cyclo ω8c and summed feature 8 (C18 : 1 ω7c/C18 : 1 ω6c). The polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylcholine, an unidentified aminolipid, an unidentified phospholipid and an unidentified aminophospholipid. The strain showed the highest 16S rRNA gene sequence similarities to Tepidiphilus margaritifer DSM 15129T (98.6 %), Tepidiphilus succinatimandens DSM 15512T (98.4 %) and Tepidiphilus thermophilus DSM 27220T (98.1 %), respectively, and the similarity to other species was lower than 93 %. In the phylogenetic trees, it constituted a unique sub-cluster within the genus Tepidiphilus . The DNA G+C content of strain J18T was 64.44 mol%. As compared with the type strains, the genome-to-genome distances of strain J18T were 34.7–40 %. These results confirmed the separate species status of J18T with its close relatives. On the basis of physiological, chemotaxonomic and phylogenetic analyses along with the low levels of identity at the whole-genome level, it can be concluded that strain J18T represents a new species of the genus Tepidiphilus , for which the name Tepidiphilus olei sp. nov. is proposed. The type strain of T. olei is J18T (=CGMCC 1.16800T=LMG 31400T).

Low-permeability to ultralow-permeability reservoirs of the China National Petroleum Corporation are crucial to increase the reserve volumes and the production of crude oil in the present and future times. This study aimed to address the two major technical bottlenecks faced by the low-permeability to ultralow-permeability reservoirs by a comprehensive use of technologies and methods such as rate-controlled mercury injection, nuclear magnetic resonance, conventional logging, physical simulation, numerical simulation, and field practices. The reservoir characteristics of low-permeability to ultralow-permeability reservoirs were first analyzed. The water flooding development adjustment mode in the middle and high water-cut stages for the low-permeability to ultralow-permeability reservoirs, where water is injected along the fracture zone and lateral displacement were established. The formation mechanism and distribution principles of dynamic fractures, residual oil description, and expanding sweep volume were studied. The development mode for Type II ultralow-permeability reservoirs with a combination of horizontal well and volume fracturing was determined; this led to a significant improvement in the initial stages of single-well production. The volume fracturing core theory and optimization design, horizontal well trajectory optimization adjustment, horizontal well injection-production well pattern optimization, and horizontal well staged fracturing suitable for reservoirs with different characteristics were developed. This understanding of the reservoir characteristics and the breakthrough of key technologies for effective development will substantially support the oil-gas valent weight of the Changqing Oilfield to exceed 50 million tons per year, the stable production of the Daqing Oilfield with 40 million tons per year (oil-gas valent weight), and the realization of 20 million tons per year (oil-gas valent weight) in the Xinjiang Oilfield.

Much research has been conducted on physical and numerical modeling that focus on stress state and structural controls on subsurface geofluid flow, yet very few attempts have been made to discover and quantify the mineral precipitation/dissolution kinetics in complex fracture system such as Tarim Basin of China. We conducted a geochemical simulation study using the outcrop fracture networks in Ordovician carbonate rocks in Tabei Outcrop Area of Tarim Basin. Structural analysis, filling analysis within the fracture networks and surrounding rocks were used to constrain the generation and geochemical evolution of the geofluids. Using an advanced reactive transport simulation platform TOUGHREACT, a pertinent thermodynamic system was applied to establish the geological model of the fracture-surrounding rock, where the corresponding calcium carbonate (CaCO3) solution was configured to replace the deep saturated hydrothermal fluids. Different types of mineral parameters were considered with material balance and phase equilibrium calculation to perform numerical simulation of multi-field, e.g., pressure field, temperature field, seepage field and chemical field under formation conditions. The simulation results were consistent with field observations. The major findings of this simulation study include: (1) Along with fluid injection, local dissolution occurred within the fractures and matrix, but with the gradual saturation of calcium ions and the increasing pH value, considerable calcite precipitation occurred. (2) The dissolution/precipitation in different fractures was mainly affected by their structure and physical properties, resulting in changes in fluid flow rate, temperature, pressure and ion concentration over time. (3) In the same group, the degree of mineral filling of small-aperture fractures, low-angle fractures and shallow fractures was significantly higher than other types of fractures. (4) The better the connectivity between reticular fractures and the higher the linear density of fractures, the lower the mineral filling degree. (5) Dissolution phenomenon strengthened within large-aperture conjugated fractures gradually along the flow direction. The proposed methodologies in this study can be applied to model effective fracture filling of other deep reservoirs.

The efficient identification of bacteria is of considerable significance in clinical diagnosis. Herein, a novel colorimetric sensor array was developed for the detection and identification of bacteria based on the specific affinity and electrostatic interaction between Wulff-type 4-mercaptophenylboronic acid (MPBA)-mercaptoethylamine (MA) cofunctionalized AgNPs (MPBA-MA@AgNPs) and bacteria at various pH. In the neutral and alkaline conditions, AgNPs tended to be dispersed due to the specific affinity between cis-diol residues contained in carbohydrate-rich compositions on the bacterial cell surface and MPBA. Bacterial cells have different carbohydrate compositions on their surface. The differential binding affinity of MPBA on the surface of AgNPs to cis-diol residues of various carbohydrates resulted in a different color change of AgNPs, which could be tuned by pH. On the contrary, AgNPs tended to be aggregated due to the electrostatic interaction between positively charged MA and negatively charged bacteria under acidic conditions. Therefore, using various pH buffer solutions as the sensing elements and MPBA-MA@AgNPs as the indicator, bacteria could be differentiated from each other by their own color response patterns. Moreover, the complex bacteria mixtures could be well discriminated. The method is simple, efficient, and visual and has a potential application in pathogen diagnosis.

Developing silver nanomaterials with efficient antimicrobial properties is of importance for combating bacteria. Here, we report ultrasmall riboflavin-protected silver nanoclusters (RF@AgNCs) that can effectively kill or suppress the growth of Gram-positive S. aureus, Gram-negative E. coli, and fungi C. albicans. Riboflavin (RF) with intrinsic biocompatibility was used as a surface ligand to synthesize silver nanoclusters. TEM revealed that the synthesized RF@AgNCs were ultrasmall (2.4 ± 1.2 nm), spherical and well-dispersed. Antibacterial activity tests showed that RF@AgNCs possessed superior antibacterial efficacy in comparison with RF, AgNPs and mixed RF and AgNPs (RF + AgNPs). The mechanisms of antibacterial activity of RF@AgNCs were studied by fluorescence microscopy-based Live/Dead cell staining assays and ROS measurement. And the results illustrated that the integrity of the bacteria membrane was disrupted and intracellular high level ROS generation was induced by RF@AgNCs. The cytotoxic activities were also assessed and RF@AgNCs were found to be non-toxic to human red blood cells and mammalian cells. With the highly efficient antibacterial activity and acceptable biocompatibility, RF@AgNCs hold great promise in biomedical applications as well as in water sterilization and the textile industry.

Protein identification is very important in the field of clinical medicine and diagnosis. Here, we report a novel and simple sensor array for the detection and identification of proteins using pH buffer solutions as sensing elements. Different proteins in various pH solutions have different net surface charges including positive, negative or no charge. Such differences may allow a pattern recognition-based sensor array for protein identification. When using negatively charged CdSe/ZnS quantum dots as an indicator, the interactions between a charged protein and quantum dots result in fluorescence changes, generating a differential response pattern for the protein. The result shows that proteins with pI > 7, pI = 7 or pI < 7 can be differentiated successfully. Moreover, complex protein mixtures are also able to be identified and the results demonstrate that surface charge may play an important role in protein sensing. The HSA of different concentrations in water and human urine can also be detected by using the sensor array. It is demonstrated that the proposed sensor array has potential applications in clinical diagnosis and proteomics.

Bacterial biofilms are responsible for many chronic infections because antibacterial agents exhibit poor penetration into the dense matrix barrier and cannot easily reach the internal bacteria. Herein, we reported pH-responsive nanocomposites (PDA@Kana-AgNPs) that could penetrate and disperse biofilms, which were synthesized by the combination of ultrasmall silver nanoparticles (AgNPs) and kanamycin, and then coating with polydopamine. Confocal fluorescence imaging indicated that PDA@Kana-AgNPs could respond to the acidic microenvironment of biofilms, leading to biofilm-triggered on- demand drug release in situ. The zone of inhibition test and Resazurin assay showed that the combination of kanamycin and AgNPs had greater antimicrobial activity against test strains (Staphylococcus aureus, Streptococcus pneumoniae, Pseudomonas aeruginosa, and Escherichia coli BL21) than when applied separately. The crystal violet staining test demonstrated that biofilms were effectively dispersed by the proposed nanocomposites. Biocompatibility was also evaluated, which showed that PDA@Kana-AgNPs were non-toxic to mammalian cells. Therefore, the proposed pH-responsive nanocomposites held great potential for efficient antibiotics delivery and showed synergistic antibacterial and antibiofilm activities. This strategy could also be used to encapsulate a variety of antibiotics in combination with other drugs or materials, thereby showing therapeutic potential in preventing biofilm-related infections and realizing fluorescence imaging in situ.

Sensitive and rapid identification of pathogenic microorganisms is of great importance for clinical diagnosis and treatment. In this study, we developed an ultrasensitive colorimetric sensor array (CSA) based on the interactions between aminoglycoside antibiotics (AMGs) and Ag nanoparticles decorated with β-cyclodextrin (AgNPs@β-CD) to discriminate microorganisms quickly and accurately. Microorganisms can absorb different amounts of AMGs after incubation. Upon the addition of AgNPs@β-CD, the corresponding extracellular AMG residues will bind to AgNPs@β-CD, leading to color changes due to the modifications in localized surface plasmon resonance. The array was developed using 4 AMGs as sensing elements and AgNPs@β-CD as the colorimetric probe to generate a unique colorimetric response pattern for each microorganism. Standard chemometric methods indicated excellent discrimination among 20 microorganisms at low concentrations of 2 × 106 CFU/mL. Therefore, this ultrasensitive CSA can be used for microbial discrimination portably and efficiently. Importantly, the concentration of microbial discrimination by our array is much lower than that of prior CSAs. This method of extracellular residue sensing also provided a new strategy to improve the sensitivity of conventional CSA in the discrimination of microorganisms, to measure the amount of intercellular uptake of AMGs by microorganisms, and to screen drugs that can easily be accumulated by the pathogenic microorganisms.

The graptolitic shale of the Wufeng–Longmaxi Formations is widely deposited across the Ordovician and Silurian transition in South China, which is the target of shale gas exploration and development within China. The contribution of graptolites to organic enrichment and reservoir of gas shale is discussed below based on the statistics of nearly 1000 shale samples from the Wufeng Formation and the bottom part of the Longmaxi Formation in the southern and northern margins of the Yangtze plate. The assessment involves graptolites abundance, the total organic carbon (TOC) content analyses, and the different scales of scanning electron microscopy analyses of related samples. The TOC content of the Wufeng–Longmaxi graptolitic shales (including graptolites and non-graptolites, i.e., the host shale) is mainly controlled by that of its host shale, while less affected by the graptolites abundance, indicating that the graptolites barely influence the organic enrichment. Graptolites consist of a large number of organic matter with reticular biological tissue structure; they account for 20%–50% of the graptolitic area. The aforementioned also developed honeycomb-shaped pores with pore sizes ranging 110 nm-1.7 μm (an average of about 500 nm), which are higher than those of the organic pores in the host shale (108–770 nm, average 330 nm), proving that graptolites have an important contribution to shale gas storage space. Since there are a large number of graptolites within the shales from the Wufeng Formation and the bottom part of the Longmaxi Formation, the laminated and stacked local pattern of their distribution provides abundant storage space for shale gas. Moreover, the feature also serves as the predominant channel for shale gas flow. Therefore, the widely developed graptolites should be considered as one of the essential factors controlling enrichment and high productivity of shale gas in the Wufeng–Longmaxi Formations. Keywords: Shale gas, Graptolites, Longmaxi formation, Organic pore, Organic enrichment, Reservoir, Sichuan basin

A surfactant-producing strain XT-1 was isolated, identified and evaluated for exogenous microbial enhanced oil recovery (e-MEOR) in this study. The strain XT-1 was identified as bacillus subtilis t...

Fractured carbonate gas reservoirs feature high heterogeneity and difficulty in development, and the invasion of edge and bottom water intensifies the complexity of exploitation of such gas reservoirs. In this study, reservoir cores with a permeability of 0.001 mD, 0.1 mD, and 10 mD were selected by analyzing the fracture characteristics of the Longwangmiao gas reservoir, and water invasion in fractured carbonate gas reservoirs with edge and bottom water was simulated using an experimental system to investigate the effects of different parameters on gas reservoir exploitation. The results show that the larger the water volume ratio, the more serious the water invasion and the lower the recovery factor. But water aquifer did not strongly affect the recovery factor once the water aquifer exceeded a critical value. The higher the gas production rate, the faster the water invasion and the smaller the recovery factor. The recovery factor peaked when the gas production rate was equivalent to the gas supply capacity of the matrix to the fractures. For gas reservoirs with the overall permeability, the higher the matrix permeability, the higher the recovery factor. Although an appropriate fracturing scale was able to enhance the recovery factor when its matrix permeability was low, an excessive fracturing scale would cause water to flow along the fractures at a rapid rate, which further caused a sharp decline in the recovery factor. With the increase of matrix permeability, fractures exerted a decreasing effect on gas reservoirs. These results can provide insights into a better understanding of water invasion and the effects of reservoir properties so as to optimize gas production in fractured carbonate gas reservoirs.

Petroleum reservoir is an unusual subsurface biosphere, where indigenous microbes lived and evolved for million years. However, continual water injection changed the situation by introduction of new electron acceptors, donors and exogenous microbes. In this study, 16S-rRNA gene sequencing, comparative metagenomics and genomic bins reconstruction were employed to investigate the microbial community and metabolic potential in three typical water-flooded blocks of the Shen84 oil reservoir in Liaohe oil field, China. The results showed significant difference of microbial community compositions and metabolic characteristics existed between the injected water and the produced water/oil mixtures; however, there was considerable uniformity between the produced samples in different blocks. Microbial communities in the produced fluids were dominated by exogenous facultative microbes such as Pseudomonas and Thauera members from Proteobacteria phylum. Metabolic potentials for O2-dependent hydrocarbon degradation, dissimilarly nitrate reduction, and thiosulfate‑sulfur oxidation were much more abundant, whereas genes involved in dissimilatory sulfate reduction, anaerobic hydrocarbon degradation and methanogenesis were less abundant in the oil reservoir. Statistical analysis indicated the water composition had an obvious influence on microbial community composition and metabolic potential. The water-flooding process accompanied with introduction of nitrate or nitrite, and dissolved oxygen promoted the alteration of microbiome in oil reservoir from slow-growing anaerobic indigenous microbes (such as Thermotoga, Clostridia, and Syntrophobacter) to fast-growing opportunists as Beta- and Gama- Proteobacteria. The findings of this study shed light on the microbial ecology change in water flooded petroleum reservoir.

The slim-tube experiment, component analysis experiment and microscopic simulation experiment are used to analyze the phenomena of reservoir blockage and drop of oil production rate, and to find out the reservoir blockage mechanisms in the process of carbon dioxide flooding. The slim-tube experiment shows that the effect of carbon dioxide flooding was poor under low displacement pressure, and the higher the displacement pressure, the better the effect of flooding. When the displacement pressure exceeded the minimum miscibility pressure, reservoir blockage could occur, affecting the reservoir productivity significantly. Component analysis and microscopic modeling experiments show that oil component differentiation could occur after oil contacted with carbon dioxide. Under low displacement pressure, component differentiation was not significant, so reservoir blockage did not occur; but when the displacement pressure was higher, aromatics in oil were extracted rapidly by carbon dioxide, resulting in quick deposition of non-hydrocarbons and asphalt and the blockage of pore-throats in reservoirs. Therefore, controlling the displacement pressure is the main measure to prevent reservoir blockage. The best pressure of carbon dioxide flooding should be near the minimum miscible pressure, pressure, too high or too low, is not good for carbon dioxide flooding. Key words: carbon dioxide flooding, reservoir blockage mechanism, minimum miscible pressure, displacement pressure, oil component differentiation

We report a simple and novel colorimetric sensor array for rapid identification of microorganisms. In this study, four gold nanoparticles (AuNPs) with diverse surface charges were used as sensing elements. The interactions between AuNPs and microorganisms led to obvious color shifts, which could be observed by the naked eye. A total of 15 microorganisms had their own response patterns and were differentiated by linear discriminant analysis (LDA) successfully. Moreover, microorganism mixtures could also be well discerned. The method is simple, fast (within 5 s), effective, and visual, showing the potential applications in pathogen diagnosis and environmental monitoring.

Background Overexpression of Pim-1 in stem/progenitor cells stimulated cell cycling and enhanced cardiac regeneration in vivo. We proposed that hypoxic preconditioning could increase survival of bone marrow mesenchymal stem cells (MSCs) via upregulation of Pim-1 and aimed to determine the microRNAs that modulate the expression of Pim-1. Methods and results MSCs were subjected to hypoxia exposure. The expression of Pim-1 in MSCs was enhanced in a time-dependent manner, detected by quantitative PCR and western blot. miR-206 is predicted as one of the potential microRNAs that target Pim-1. The expression of miR-206 was decreased in hypoxic MSCs and reversely correlated with Pim-1 expression. Luciferase activity assay further confirmed Pim-1 as a putative target of miR-206. In addition, gain and loss-of-function studies with miR-206 mimics and inhibitors showed that inhibition of miR-206 in hypoxic MSCs promoted the migration ability of the cells, prevented cell apoptosis, and protected membrane potential of mitochondria, while the benefits were all blocked by Pim-1 inhibitor. In an acute model of myocardial infarction, transplanted hypoxic MSCs showed a significantly improved survival as compared with hypoxic MSCs overexpressing miR-206. Conclusions Hypoxic preconditioning could increase short-term survival of bone marrow MSCs via upregulation of Pim-1, and miR-206 was one of the critical regulators in this process.

The gas transport in shale nanopores is always one of the major concerns in terms of the development of shale gas reservoirs. In this study, the gas flow regimes in shale nanopores were classified and analyzed according to Knudsen number. Then the gas flow model considering Darcy flow, slip flow, transition flow, molecular free flow and adsorption effect was proposed to evaluate the gas flow behavior in shale nanopores. The result shows that the contributions of Darcy flow, slip flow and transition flow in shale nanopores are reciprocal, and are mainly dominated by pore radius and pressure. The adsorption effect greatly influences the total mass flux. The total mass flux will increase as Langmuir pressure and temperature increase while it will decrease with reservoir pressure and the adsorption thickness. These results can provide insights for a better understanding of gas flow in the shale nanopores so as to optimize the production performance of shale gas reservoirs.