1. Protein tertiary structure and the myoglobin phase diagram
- Author
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Antti J. Niemi, Alexander Molochkov, and Alexander Begun
- Subjects
Models, Molecular ,0301 basic medicine ,Protein Folding ,Biomaterials - proteins ,Globular protein ,lcsh:Medicine ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Phase (matter) ,lcsh:Science ,chemistry.chemical_classification ,Quantitative Biology::Biomolecules ,Multidisciplinary ,Myoglobin ,lcsh:R ,Protein tertiary structure ,Molten globule ,Random coil ,Protein Structure, Tertiary ,Phase transitions and critical phenomena ,030104 developmental biology ,chemistry ,Tricritical point ,Chemical physics ,Protein folding ,lcsh:Q ,Biological physics ,030217 neurology & neurosurgery - Abstract
We develop an effective theory approach to investigate the phase properties of globular proteins. Instead of interactions between individual atoms or localized interaction centers, the approach builds directly on the tertiary structure of a protein. As an example we construct the phase diagram of (apo)myoglobin with temperature (T) and acidity (pH) as the thermodynamical variables. We describe how myoglobin unfolds from the native folded state to a random coil when temperature and acidity increase. We confirm the presence of two molten globule folding intermediates, and we predict an abrupt transition between the two when acidity changes. When temperature further increases we find that the abrupt transition line between the two molten globule states terminates at a tricritical point, where the helical structures fade away. Our results also suggest that the ligand entry and exit is driven by large scale collective motions that destabilize the myoglobin F-helix.
- Published
- 2019