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Stabilization of the metastable envelope glycoprotein (Env) of HIV-1 is hypothesized to improve induction of broadly neutralizing antibodies. We improved the expression yield and stability of the HIV-1 envelope glycoprotein BG505SOSIP.664 gp140 by means of a previously described automated sequence and structure-guided computational thermostabilization approach, PROSS. This combines sequence conservation information with computational assessment of mutant stabilization, thus taking advantage of the extensive natural sequence variation present in HIV-1 Env. PROSS is used to design three gp140 variants with 17-45 mutations relative to the parental construct. One of the designs is experimentally observed to have a fourfold improvement in yield and a 4 °C increment in thermostability. In addition, the designed immunogens have similar antigenicity profiles to the native flexible linker version of wild type, BG505SOSIP.664 gp140 (NFL Wt) to major epitopes targeted by broadly neutralizing antibodies. PROSS eliminates the laborious process of screening many variants for stability and functionality, providing a proof of principle of the method for stabilization and improvement of yield without compromising antigenicity for next generation complex, highly glycosylated vaccine candidates.

The Receptor Binding Domain (RBD) of SARS-CoV-2 is the primary target of neutralizing antibodies. We designed a trimeric, highly thermotolerant glycan engineered RBD by fusion to a heterologous, poorly immunogenic disulfide linked trimerization domain derived from cartilage matrix protein. The protein expressed at a yield of ∼80-100 mg/liter in transiently transfected Expi293 cells, as well as CHO and HEK293 stable cell lines and formed homogeneous disulfide-linked trimers. When lyophilized, these possessed remarkable functional stability to transient thermal stress of upto 100 °C and were stable to long term storage of over 4 weeks at 37 °C unlike an alternative RBD-trimer with a different trimerization domain. Two intramuscular immunizations with a human-compatible SWE adjuvanted formulation, elicited antibodies with pseudoviral neutralizing titers in guinea pigs and mice that were 25-250 fold higher than corresponding values in human convalescent sera. Against the beta (B.1.351) variant of concern (VOC), pseudoviral neutralization titers for RBD trimer were ∼ three-fold lower than against wildtype B.1 virus. RBD was also displayed on a designed ferritin-like Msdps2 nanoparticle. This showed decreased yield and immunogenicity relative to trimeric RBD. Replicative virus neutralization assays using mouse sera demonstrated that antibodies induced by the trimers neutralized all four VOC to date, namely B.1.1.7, B.1.351, P.1 and B.1.617.2 without significant differences. Trimeric RBD immunized hamsters were protected from viral challenge. The excellent immunogenicity, thermotolerance, and high yield of these immunogens suggest that they are a promising modality to combat COVID-19, including all SARS-CoV-2 VOC to date.

Thermostable direct hemolysin (TDH) of Vibrio parahemolyticus is a membrane-damaging pore-forming toxin with potent cytolytic/cytotoxic activity. TDH exists as a tetramer consisting of protomers with a core β-sandwich domain, flanked by an 11-amino acid long N-terminal region (NTR). This NTR could not be modeled in the previously determined crystal structure of TDH. Moreover, the functional implication of NTR for the membrane-damaging action of TDH remains unknown. In the present study, we have explored the implications of NTR for the structure-function mechanism of TDH. Our data show that the presence of NTR modulates the physicochemical property of TDH in terms of augmenting the amyloidogenic propensity of the protein. Deletion of NTR compromises the binding of TDH toward target cell membranes and drastically affects the membrane-damaging cytolytic/cytotoxic activity of the toxin. Mutations of aromatic/hydrophobic residues within NTR also confer compromised cell-killing activity. Moreover, covalent trapping of NTR, via an engineered disulfide bond, against the core β-sandwich domain also abrogates the cytolytic/cytotoxic activity of TDH. This observation suggests that an unrestrained configuration of NTR is crucial for the membrane-damaging action of TDH. On the basis of our study, we propose a model explaining the role of NTR in the membrane-damaging function of TDH.

Uracil is not always a mistakenly occurring base in DNA. Uracils in DNA genomes are known to be important in the life cycles of Bacillus subtilis phages (PBS1/2) and the malarial parasite, Plasmodium falciparum; and have been implicated in the development of fruit fly and antibody maturation in B-lymphocytes. Availability of a sensitive, specific and robust technique for the detection uracils in genes/genomes is essential to understand its varied biological roles. Mycobacterium smegmatis UdgX (MsmUdgX), identified and characterised in our laboratory, forms covalent complexes with the uracil sites in DNA in a specific manner. MsmUdgX cleaves the glycosidic bond between uracil and the deoxyribose sugar in DNA to produce uracilate and oxocarbenium ions. The oxocarbenium ion is then captured into a covalent complex by the nucleophilic attack of a histidine side chain of MsmUdgX. Here, we describe the use of a fusion protein, mCherry tagged MsmUdgX (mChUdgX), which combines the property of MsmUdgX to covalently and specifically bind the uracil sites in the genome, with the sensitivity of fluorescent detection of mCherry as a reporter. We show that both the purified mChUdgX and the Escherichia coli cell-extracts overexpressing mChUdgX provide high sensitivity and specificity of detecting uracils in DNA.

Metabotropic glutamate receptors are family C G-protein-coupled receptors. They form obligate dimers and possess extracellular ligand-binding Venus flytrap domains, which are linked by cysteine-rich domains to their 7-transmembrane domains. Spectroscopic studies show that signalling is a dynamic process, in which large-scale conformational changes underlie the transmission of signals from the extracellular Venus flytraps to the G protein-coupling domains-the 7-transmembrane domains-in the membrane. Here, using a combination of X-ray crystallography, cryo-electron microscopy and signalling studies, we present a structural framework for the activation mechanism of metabotropic glutamate receptor subtype 5. Our results show that agonist binding at the Venus flytraps leads to a compaction of the intersubunit dimer interface, thereby bringing the cysteine-rich domains into close proximity. Interactions between the cysteine-rich domains and the second extracellular loops of the receptor enable the rigid-body repositioning of the 7-transmembrane domains, which come into contact with each other to initiate signalling.

Current influenza vaccines need to be updated annually due to mutations in the globular head of the viral surface protein, hemagglutinin (HA). To address this, vaccine candidates have been designed based on the relatively conserved HA stem domain and have shown protective efficacy in animal models. Oligomerization of the antigens either by fusion to oligomerization motifs or display on self-assembling nanoparticle scaffolds, can induce more potent immune responses compared to the corresponding monomeric antigen due to multivalent engagement of B-cells. Since nanoparticle display can increase manufacturing complexity, and often involves one or more mammalian cell expressed components, it is important to characterize and compare various display and oligomerization scaffolds. Using a structure guided approach, we successfully displayed multiple copies of a previously designed soluble, trimeric influenza stem domain immunogen, pH1HA10, on the ferritin like protein, MsDps2 (12 copies), Ferritin (24 copies) and Encapsulin (180 copies). All proteins were expressed in Escherichia coli. The nanoparticle fusion immunogens were found to be well folded and bound to the influenza stem directed broadly neutralizing antibodies with high affinity. An 8.5 Å Cryo-EM map of Msdps2-pH1HA10 confirmed the successful design of the nanoparticle fusion immunogen. Mice immunization studies with the soluble trimeric stem and nanoparticle fusion constructs revealed that all of them were immunogenic, and protected mice against homologous (A/Belgium/145-MA/2009) and heterologous (A/Puerto Rico/8/1934) challenge with 10MLD50 mouse adapted virus. Although nanoparticle display conferred a small but statistically significant improvement in protection relative to the soluble trimer in a homologous challenge, heterologous protection was similar in both nanoparticle-stem immunized and trimeric stem immunized groups. Such rapidly producible, bacterially expressed antigens and nanoparticle scaffolds are useful modalities to tackle future influenza pandemics.

In this manuscript, we report the application of graphene oxide (GO) in the preparation of cryo-electron microscopy (cryo-EM) and transmission electron microscopy (TEM) grids. We treated GO with water and organic solvents, such as, methanol, ethanol and isopropanol separately to isolate significantly large GO monolayer flake to fabricate the grids for cryo-EM and TEM study. We implemented a simplified approach to isolate flakes of GO monolayer for constructing the TEM grids, independent of expensive heavy equipment (Langmuir–Blodgett trough, glow-discharge system, carbon-evaporator or plasma-cleaner or peristaltic pumps). We employed confocal microscopy, SEM and TEM to characterize the flake size, stability and transparency of the GO monolayer and atomic force microscopy (AFM) to probe the depth of GO coated grids. Additionally, GO grids are visualized at cryogenic condition for suitability of GO monolayer for cryo-EM study. In addition, GO-Met-H2O grids reduce the effect of preferred orientation of biological macromolecules within the amorphous ice. The power-spectrum and contrast-transfer-function unequivocally suggest that GO-Met-H2O fabricated holey grids have excellent potential for application in high-resolution structural characterization of biomolecules. Furthermore, only 200 movies and ~8000 70S ribosome particles are selected on GO-coated grids for cryo-EM reconstruction to achieve high-resolution structure.

Spike (S) glycoprotein of SARS-CoV2 exists chiefly in two conformations, open and closed. Most previous structural studies on S protein have been conducted at pH 8.0, but knowledge of the conformational propensities under both physiological and endosomal pH conditions is important to inform vaccine development. Our current study employed single-particle cryoelectron microscopy to visualize multiple states of open and closed conformations of S protein at physiological pH 7.4 and near-physiological pH 6.5 and pH 8.0. Propensities of open and closed conformations were found to differ with pH changes, whereby around 68% of S protein exists in open conformation at pH 7.4. Furthermore, we noticed a continuous movement in the N-terminal domain, receptor-binding domain (RBD), S2 domain, and stalk domain of S protein conformations at various pH values. Several key residues involving RBD-neutralizing epitopes are differentially exposed in each conformation. This study will assist in developing novel therapeutic measures against SARS-CoV2., Graphical abstract, In this study, Pramanick et al. demonstrate inherent structural flexibility of NTD, RBD, and stalk domain of SARS-CoV2 Spike glycoprotein. Eleven high-resolution cryo-EM structures obtained over a range of near-physiological pH values indicate a trend of increasing open conformational state of S protein at physiological pH 7.4.

The presence of complex organic molecules (COMs) in the interstellar medium (ISM) is of great interest since it may link to the origin and prevalence of life in the universe. Aiming to investigate the occurrence of COMs and their possible origins, we conducted a chemical census toward a sample of protostellar cores as part of the ALMA Survey of Orion Planck Galactic Cold Clumps (ALMASOP) project. We report the detection of 11 hot corino sources, which exhibit compact emissions from warm and abundant COMs, among 56 Class 0/I protostellar cores. All the hot corino sources discovered are likely Class 0 and their sizes of the warm region ($>$ 100 K) are comparable to 100 au. The luminosity of the hot corino sources exhibits positive correlations with the total number of methanol and the extent of its emissions. Such correlations are consistent with the thermal desorption picture for the presence of hot corino and suggest that the lower luminosity (Class 0) sources likely have a smaller region with COMs emissions. With the same sample selection method and detection criteria being applied, the detection rates of the warm methanol in the Orion cloud (15/37) and the Perseus cloud (28/50) are statistically similar when the cloud distances and the limited sample size are considered. Observing the same set of COM transitions will bring a more informative comparison between the cloud properties., 34 pages. 14 figures. 1 figure set. 1 machine-readable table. Accepted for publication in ApJ

SummaryDesensitization, signaling and trafficking of G protein-coupled receptors (GPCRs) are critically regulated by multifunctional adaptor proteins, β-arrestins (βarrs). The two isoforms of βarrs (βarr1 and 2) share a high degree of sequence and structural similarity, still however, they often mediate distinct functional outcomes in the context of GPCR signaling and regulation. A mechanistic basis for such a functional divergence of βarr isoforms is still lacking. Using a set of complementary approaches including antibody fragment based conformational sensors, we discover structural differences between βarr1 and 2 upon their interaction with activated and phosphorylated receptors. Interestingly, domain swapped chimeras of βarrs display robust complementation in functional assays thereby, linking the structural differences between the receptor-bound βarr1 and 2 with their divergent functional outcomes. Our findings reveal important insights into the ability of βarr isoforms to drive distinct functional outcomes, and underscore the importance of integrating this aspect in the current framework of biased agonism.

We report the detection of four new hot corino sources, G211.47-19.27S, G208.68-19.20N1, G210.49-19.79W and G192.12-11.10 from a survey study of Planck Galactic Cold Clumps in the Orion Molecular Cloud Complex with the Atacama Compact Array (ACA). Three sources had been identified as low mass Class 0 protostars in the Herschel Orion Protostar Survey (HOPS). One source in the lambda Orionis region is firstly reported as a protostellar core. We have observed abundant complex organic molecules (COMs), primarily methanol but also other oxygen-bearing COMs (in G211.47-19.27S and G208.68-19.20N1) and the molecule of prebiotic interest NH2CHO (in G211.47-19.27S), signifying the presence of hot corinos. While our spatial resolution is not sufficient for resolving most of the molecular emission structure, the large linewidth and high rotational temperature of COMs suggest that they likely reside in the hotter and innermost region immediately surrounding the protostar. In G211.47-19.27S, the D/H ratio of methanol ([CH2DOH]/[CH3OH]) and the 12C/13C ratio of methanol ([CH3OH]/[13CH3OH]) are comparable to those of other hot corinos. Hydrocarbons and long carbon-chain molecules such as c-C3H2 and HCCCN are also detected in the four sources, likely tracing the outer and cooler molecular envelopes., 37 pages, 51 figures, to be published in ApJ

Binding to the von Willebrand factor (VWF) D′D3 domains protects factor VIII (FVIII) from rapid clearance. We performed single-particle electron microscopy (EM) analysis of negatively stained specimens to examine the architecture of D′D3 alone and in complex with FVIII. The D′D3 dimer ([D′D3]2) comprises 2 antiparallel D3 monomers with flexibly attached protrusions of D′. FVIII-VWF association is primarily established between the FVIII C1 domain and the VWF D′ domain, whereas weaker interactions appear to be mediated between both FVIII C domains and the VWF D3 core. Modeling the FVIII structure into the three-dimensional EM reconstructions of [D′D3]2-FVIII ternary and quaternary complexes indicates conformational rearrangements of the FVIII C domains compared with their disposition in the unbound state. These results illustrate the cooperative plasticity between VWF and FVIII that coordinate their high-affinity interaction.

Polyketide natural products constitute a broad class of compounds with diverse structural features and biological activities. Their biosynthetic machinery, represented by type I polyketide synthases (PKSs), has an architecture in which successive modules catalyse two-carbon linear extensions and keto-group processing reactions on intermediates covalently tethered to carrier domains. Here we used electron cryo-microscopy to determine sub-nanometre-resolution three-dimensional reconstructions of a full-length PKS module from the bacterium Streptomyces venezuelae that revealed an unexpectedly different architecture compared to the homologous dimeric mammalian fatty acid synthase. A single reaction chamber provides access to all catalytic sites for the intramodule carrier domain. In contrast, the carrier from the preceding module uses a separate entrance outside the reaction chamber to deliver the upstream polyketide intermediate for subsequent extension and modification. This study reveals for the first time, to our knowledge, the structural basis for both intramodule and intermodule substrate transfer in polyketide synthases, and establishes a new model for molecular dissection of these multifunctional enzyme systems. Polyketide synthases are multidomain enzymes that produce polyketides, which form the basis of many therapeutic agents; here, electron cryo-microscopy is used to establish the structure of a bacterial full-length module, and to elucidate the structural basis of both intramodule and intermodule substrate transfer. Polyketide synthases (PKSs) are multi-domain enzyme complexes producing polyketides, a large class of secondary metabolites — in other words, natural products. Two papers from Georgios Skiniotis and colleagues use cryo-electron microscopy to probe the structure of an intact module of a full-length multienzyme PKS module involved in pikromycin biosynthesis in the bacterium Streptomyces venezuelae in different functional states. The structures reveal how the ketosynthase, acyltransferase, ketoreductase and acyl carrier protein (ACP) domains interact during the catalytic cycle. In each state the ACP is differentially positioned to facilitate intermediate transfer for the next catalytic step and for transfer to the next module.

Polyketide synthases (PKSs) are multidomain enzymes that produce polyketides, which form the basis of many therapeutic agents; here, electron cryo-microscopy is used to probe the structure of an intact module of a multi-enzyme PKS in different functional states. Polyketide synthases (PKSs) are multi-domain enzyme complexes producing polyketides, a large class of secondary metabolites — in other words, natural products. Two papers from Georgios Skiniotis and colleagues use cryo-electron microscopy to probe the structure of an intact module of a full-length multienzyme PKS module involved in pikromycin biosynthesis in the bacterium Streptomyces venezuelae in different functional states. The structures reveal how the ketosynthase, acyltransferase, ketoreductase and acyl carrier protein (ACP) domains interact during the catalytic cycle. In each state the ACP is differentially positioned to facilitate intermediate transfer for the next catalytic step and for transfer to the next module. The polyketide synthase (PKS) mega-enzyme assembly line uses a modular architecture to synthesize diverse and bioactive natural products that often constitute the core structures or complete chemical entities for many clinically approved therapeutic agents1. The architecture of a full-length PKS module from the pikromycin pathway of Streptomyces venezuelae creates a reaction chamber for the intramodule acyl carrier protein (ACP) domain that carries building blocks and intermediates between acyltransferase, ketosynthase and ketoreductase active sites (see accompanying paper2). Here we determine electron cryo-microscopy structures of a full-length pikromycin PKS module in three key biochemical states of its catalytic cycle. Each biochemical state was confirmed by bottom-up liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry. The ACP domain is differentially and precisely positioned after polyketide chain substrate loading on the active site of the ketosynthase, after extension to the β-keto intermediate, and after β-hydroxy product generation. The structures reveal the ACP dynamics for sequential interactions with catalytic domains within the reaction chamber, and for transferring the elongated and processed polyketide substrate to the next module in the PKS pathway. During the enzymatic cycle the ketoreductase domain undergoes dramatic conformational rearrangements that enable optimal positioning for reductive processing of the ACP-bound polyketide chain elongation intermediate. These findings have crucial implications for the design of functional PKS modules, and for the engineering of pathways to generate pharmacologically relevant molecules.

A major goal for HIV-1 vaccine development is an ability to elicit strong and durable broadly neutralizing antibody (bNAb) responses. The trimeric envelope glycoprotein (Env) spikes on HIV-1 are known to contain multiple epitopes that are susceptible to bNAbs isolated from infected individuals. Nonetheless, all trimeric and monomeric Env immunogens designed to date have failed to elicit such antibodies. We report the structure-guided design of HIV-1 cyclically permuted gp120 that forms homogeneous, stable trimers, and displays enhanced binding to multiple bNAbs, including VRC01, VRC03, VRC-PG04, PGT128, and the quaternary epitope-specific bNAbs PGT145 and PGDM1400. Constructs that were cyclically permuted in the V1 loop region and contained an N-terminal trimerization domain to stabilize V1V2-mediated quaternary interactions, showed the highest homogeneity and the best antigenic characteristics. In guinea pigs, a DNA prime-protein boost regimen with these new gp120 trimer immunogens elicited potent neutralizing antibody responses against highly sensitive Tier 1A isolates and weaker neutralizing antibody responses with an average titer of about 115 against a panel of heterologous Tier 2 isolates. A modest fraction of the Tier 2 virus neutralizing activity appeared to target the CD4 binding site on gp120. These results suggest that cyclically permuted HIV-1 gp120 trimers represent a viable platform in which further modifications may be made to eventually achieve protective bNAb responses.

The henipaviruses, Hendra virus (HeV) and Nipah virus (NiV), are paramyxoviruses discovered in the mid- to late 1990s that possess a broad host tropism and are known to cause severe and often fatal disease in both humans and animals. HeV and NiV infect cells by a pH-independent membrane fusion mechanism facilitated by their attachment (G) and fusion (F) glycoproteins. Here, several soluble forms of henipavirus F (sF) were engineered and characterized. Recombinant sF was produced by deleting the transmembrane (TM) and cytoplasmic tail (CT) domains and appending a glycosylphosphatidylinositol (GPI) anchor signal sequence followed by GPI-phospholipase D digestion, appending a trimeric coiled-coil (GCNt) domain (sF GCNt ), or deleting the TM, CT, and fusion peptide domain. These sF glycoproteins were produced as F 0 precursors, and all were apparent stable trimers recognized by NiV-specific antisera. Surprisingly, however, only the GCNt-appended constructs (sF GCNt ) could elicit cross-reactive henipavirus-neutralizing antibody in mice. In addition, sF GCNt constructs could be triggered in vitro by protease cleavage and heat to transition from an apparent prefusion to postfusion conformation, transitioning through an intermediate that could be captured by a peptide corresponding to the C-terminal heptad repeat domain of F. The pre- and postfusion structures of sF GCNt and non-GCNt-appended sF could be revealed by electron microscopy and were distinguishable by F-specific monoclonal antibodies. These data suggest that only certain sF constructs could serve as potential subunit vaccine immunogens against henipaviruses and also establish important tools for further structural, functional, and diagnostic studies on these important emerging viruses.

Nipah virus (NiV) is a paramyxovirus that infects host cells through the coordinated efforts of two envelope glycoproteins. The G glycoprotein attaches to cell receptors, triggering the fusion (F) glycoprotein to execute membrane fusion. Here we report the first crystal structure of the pre-fusion form of the NiV-F glycoprotein ectodomain. Interestingly this structure also revealed a hexamer-of-trimers encircling a central axis. Electron tomography of Nipah virus-like particles supported the hexameric pre-fusion model, and biochemical analyses supported the hexamer-of-trimers F assembly in solution. Importantly, structure-assisted site-directed mutagenesis of the interfaces between F trimers highlighted the functional relevance of the hexameric assembly. Shown here, in both cell-cell fusion and virus-cell fusion systems, our results suggested that this hexamer-of-trimers assembly was important during fusion pore formation. We propose that this assembly would stabilize the pre-fusion F conformation prior to cell attachment and facilitate the coordinated transition to a post-fusion conformation of all six F trimers upon triggering of a single trimer. Together, our data reveal a novel and functional pre-fusion architecture of a paramyxoviral fusion glycoprotein., Author Summary Paramyxoviruses infect host cells through the coordinated functions of two envelope glycoproteins. The G glycoprotein attaches to cell receptors triggering the fusion (F) glycoprotein to execute membrane fusion. The crystal structure of the NiV-F protein has not been reported. Additionally, many molecular details of the virus-cell fusion process remain elusive, including how the higher-energy pre-fusion conformation state of the F glycoprotein is stabilized, or how many copies of the F glycoprotein are required for fusion. This manuscript reports the pre-fusion crystal structure of NiV-F glycoprotein, and a functional hexamer-of-trimers assembly, with six F trimers encircling a central axis. Multidisciplinary data suggested that this assembly plays a role in the stability of the pre-fusion F conformation prior to cell attachment and F-triggering to a post-fusion conformation. Thus this assembly may coordinate this transition in all six F trimers upon triggering of a single trimer during membrane fusion pore formation.

In addition to the zirconation of benzylic hydrocarbons, Ar−CH3, by di-n-butylzirconium diethoxide and the ensuing C−C bond formation from (Ar−CH2)2Zr(OEt)2 to yield Ar−CH2−CH(ZrH(OEt)2)−Ar, it has now been found that Bu2Zr(OEt)2 in ethers can also cleave the C−C bond in bibenzylic hydrocarbons, Ar−CH2−CH2−Ar‘, into benzylic zirconium fragments, (Ar−CH2)(Ar‘−CH2)Zr(OEt)2, as fostered by LiOEt and donor solvents. The role of SET processes in such C−C bond cleavages and the potential relevance to practical alkane metathesis are considered.

A broad survey of both the simple and double decomposition modes of transition metal alkyls has been undertaken. From the two main processes of C–M bond rupture, homolysis, and β-metal hydride elimination, the following modes of decomposition and types of useful reagents generated can be distinguished: 1) reductive decomposition of RnMEm–n to yield subvalent, carbene- or free-radical-like MEm–n, which can cleave π- or σ-bonds by direct epimetallation; 2) β-metal hydride elimination to produce hydrometallating agents; 3) combined reductive and β-metal hydride eliminations to produce anionic, and hence more nucleophilic, epimetallating agents; 4) α-metal hydride elimination thought to be involved in the transition state leading to C–C bond coupling from (RR'HC)2ME2 derivatives; 5) α,μ-elimination from lithiated RHC(Li)–MEn–1, which produces alkylidenes, RHC=MEn–2, capable of ROMP catalysis; 6) metal–hydrogen metathesis, whereby sufficiently acidic C–H bonds become C–M bonds; 7) metal–metal metathesis, whereby RR'ME2 undergoes an equilibrating redistribution reaction to form R2ME2 and R'2ME2; 8) transfer epimetallation, in which epimetallation (point 1) is achieved with R2ME2 in one step by transfer of ME2 to the substrate with the concomitant loss of R groups; and 9) transfer epimetallation of olefins by R2TiE2 in hydrocarbons to produce titana(IV)cyclopropanes, which serve as active sites in Ziegler–Natta polymerization. In each situation, the reaction-mechanistic features are analyzed in terms of existing experimental data and evidence. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2005)

The mechanism of the rearrangement of diorganylzirconium dialkoxides, such as R1(R2CH2)Zr(OEt)2, into organylzirconium hydride alkoxides of the type R1R2CHZr(OEt)2H, has been investigated as a function of the R1 and R2 substituents and been found to involve optimally an intramolecular migration of R1 to an sp3-hybridized C−H center. A remarkably rapid transfer hydrozirconation between Bun2Zr(OEt)2 and the olefin RCHCH2 now permits the synthesis of (RCH2CH2)2Zr(OEt)2, whose rearrangement offers a route to the linear olefin dimer R(CH2)4R.

Vibrio cholerae hemolysin (HlyA) is a 65 kDa pore-forming toxin which causes lysis of target eukaryotic cells by forming heptameric channels in the plasma membrane. Deletion of the 15 kDa C-terminus β-prism carbohydrate-binding domain generates a 50 kDa truncated variant (HlyA50) with 1000-fold-reduced pore-forming activity. Previously, we showed by cryo-electron microscopy that the two toxin oligomers have central channels, but the 65 kDa toxin oligomer is a seven-fold symmetric structure with bowl-, ring-, and arm-like domains, whereas the 50 kDa oligomer is an asymmetric jar-like heptamer. In the present study, we determined three-dimensional(3D) structures of HlyA and HlyA50 in presence of erythrocyte stroma and observed that interaction of the 65 kDa toxin with the stroma induced a significant decrease in the height of the β-barrel oligomer with a change in conformation of the ring- and arm-like domains of HlyA. These features were absent in interaction of HlyA50 with stroma. We propose that this conformational transition is critical for membrane-insertion of the toxin.

Benzylic hydrocarbons of the types Ar−CH3 and Ar2CH2 undergo zirconation at their benzylic C−H bonds by Bun2Zr(OEt)2 at room temperature in Lewis basic solvents and catalyzed by lithium ethoxide. Upon heating, such benzylic organozirconium derivatives can undergo C−C bond formation, either intermolecularly or intramolecularly, with the elimination of zirconium(IV) hydrides of the type H2Zr(OEt)2. Such oxidative dimerizations or cyclizations are exemplified by the conversion of toluene into trans-stilbene or the formation of 9,10-dihydrophenanthrene from 2,2 ‘-dimethylbibenzyl.

The complexes [VIVO(L)(bpy)] and [VVO(L)(OMe)(OHMe)] (H2L  Schiff base condensate of salicylaldehyde and an α-amino acid and bpy = 2,2′-bipyridine) have been synthesized. The [VIVO(L)(OMe)(OHMe)]− species have been electrogenerated in solutions. The VO 3+ − VO 2+ E 1 2 values of [VO(L)(OHMe)] are lower than those of [VO(L)(bpy)] by ≈750 mV. Upon exposure to air [VO(L)(OMe)(OHMe)]− is spontaneously oxidized to [VO(L)(OMe)(OHMe)]. The [VO(L)(bpy)] and [VO(L)(OMe) (OHMe)]− complexes display dxy1 type axial EPR spectra. The 51V hyperfine constants follow the order [VO(L)(OMe)(OHMe)]− > [VO(L)(bpy)]. The dxy → dxz, dyz transition in these complexes appear in the region 700–720 nm.

The complexes [VO(L1)(hquin)] and [VO(L2)(hquin)] incorporating N-salicylidene-glycinate and -L-phenylalaninate respectively have been synthesised in excellent yields from [VIVO(L)(H2O)] and quinolin-8-ol (Hhquin) in air which acts as the oxidant. The crystal structure of [VO(L2)(hquin)] revealed tridentate ONO and bidentate ON binding by [L2]2– and hquin– respectively. The V–O (carboxylate) bond length is longer than V–O (phenolate) by ≈0.1 A. The CD spectrum of [VO(L2)(hquin)] in the visible region revealed the composite nature of the phenolato→vanadium charge-transfer band. The absolute configuration of [VO(L2)(hquin)] is CS both in the crystalline state and in solution. In CDCl3 solution the 1H NMR spectrum of the complex shows that the amino acid side chain has the same conformation as that in the crystal lattice. The complexes display the quasi-reversible one-electron couple [VO(L)(hquin)]–[VO(L)(hquin)]– near 0.0 V vs. saturated calomel electrode. Electrogenerated solutions of [VO(L)(hquin)]– are EPR-active corresponding to a dxy1 configuration.

Water soluble manganese(III) complexes of sulphonated azophenol and salicylaldimine ligands 3–6, have been isolated: Na3[Mn(LS)2]·nH2O and Na5[Mn(LSS)2]·nH2O (n = 4 or 5) where H3LS and H4LSS represent mono- and di-sulphonated ligands, respectively. The coordination sphere of the complexes are of the type Mn(ONO)2 where the O and N atoms are of phenolic and azo/azomethine type. The complexes are uniformly high-spin (t23e1) in character (∼5 μB). The manganese(IV)-manganese(III) couple in water has cyclic voltammetric E 1 2 values in the range 0.30–0.50 V vs SCE and it is estimated that the potentials increase by 70 mV for each sulphonate substitution. The manganese(IV) complexes [Mn(LS)2]2− and [Mn(LSS)2]4− have been quantitatively generated in solution both chemically and electrochemically. Their X-band EPR spectra consist of a strong resonance near g = 2. In frozen water-ethylene glycol glass (77 K) the g = 2 resonance shows 55Mn hyperfine structure (A, 94–97 G). Forbidden lines are also resolved and with their help the axial zero-field splitting parameter D is estimated to be 0.012 cm−1. It is small compared to the X-band quantum, 0.31 cm−1.

The reaction of bis(acetylacetonato)oxovanadium(IV) with a mixture of a tridentate ONO-co-ordinating hydrazone H2L1–H2L4(general abbreviation H2L; condensates of benzoylhydrazine with benzoylacetone, salicylaldehyde, 2-hydroxy-1-naphthaldehyde and 2-hydroxybutyrophenone respectively) and a bidentate compound 2,2′-bipyridine (bipy), 1,10-phenanthroline (phen) or quinolin-8-ol (Hquin) has afforded the complexes [VIVO(L)(bipy)]. [VIVO(L)(phen)] and [VVO(L)(quin)] in high yields. The crystal structure of [VO(L1)(quin)] has been determined, revealing the distorted-octahedral VO(ONO)(ON) co-ordination sphere with the L1 ligand spanning meridionally. The VO distance is 1.592(3)A and the atom lying trans to VO is the quin nitrogen. There is a large decrease (≈ 700 mV) in the VO3+–VO2+E½ values between [VO(L)(bipy)]{or [VO(L)(phen)]} and [VO(L)(quin)]. The complex [VIVO(L)(quin)]– was electrogenerated in solution but spontaneously reoxidized to [VVO(L)(quin)] in air. For a given bidentate ligand, the VO3+–VO2+E½ values follow the order L1 < L4 < L2 < L3. The ESR spectra of the VO2+ complexes correspond to an axially compressed dxy1 configuration. The 51V hyperfine constants are slightly larger for [VO(L)(quin)]– than for [VO(L)-(bipy)] and [VO(L)(phen)]. The dxy→ dxz,dyz transition of the tetravalent complexes occurs in the region 700–950 nm.

The active-state complex between an agonist-bound receptor and a guanine nucleotide-free G protein represents the fundamental signaling assembly for the majority of hormone and neurotransmitter signaling. We applied single-particle electron microscopy (EM) analysis to examine the architecture of agonist-occupied β 2 -adrenoceptor (β 2 AR) in complex with the heterotrimeric G protein Gs (Gαsβγ). EM 2D averages and 3D reconstructions of the detergent-solubilized complex reveal an overall architecture that is in very good agreement with the crystal structure of the active-state ternary complex. Strikingly however, the α-helical domain of Gαs appears highly flexible in the absence of nucleotide. In contrast, the presence of the pyrophosphate mimic foscarnet (phosphonoformate), and also the presence of GDP, favor the stabilization of the α-helical domain on the Ras-like domain of Gαs. Molecular modeling of the α-helical domain in the 3D EM maps suggests that in its stabilized form it assumes a conformation reminiscent to the one observed in the crystal structure of Gαs-GTPγS. These data argue that the α-helical domain undergoes a nucleotide-dependent transition from a flexible to a conformationally stabilized state.

The aerial reaction of 2,2'-dihydroxyazobenzene (H 2 L) with bis(acetylacetonato)oxovanadium(IV) in methanol affords binuclear V v 2 O 3 L 2 . In the presence of KOH, KV v O 2 L.1.5H 2 O is isolated. Dilute acids convert VO 2 L. to V 2 O 3 L 2 via V v O(OH)L. The electronic and IR spectra of the complexesare described. In crystalline KVO 2 L.1.5H 2 O, the vanadium(V) atom has square pyramidal geometry. The base is formed by coordinated ONO atoma of L 2- and an oxo oxygen atom

The reaction of the tris(arylazo oximato)iron(II) anion, Fe(RL) 3 - (R=Me, Ph, p-MeC 6 H 4 ), with Cu(MeCN) 4 + in dichloromethane under air affords the trinuclear complex Cu II Fe II 2 (RL) 6 . In the presence of PPh 3 in the reaction mixture, the binuclear complex Cu I Fe II (RL) 3 (PPh 3 ) is isolated. The X-ray structures of CuFe(MeL) 3 (PPh 3 ) and CuFe 2 (PhL) 6 .2CH 2 Cl 2 are reported. In both complexes the Fe(RL) 3 - fragment acts as a facially disposed tridentate oximato-O 3 ligand

In the title families the ONO ligands are deprotonated forms of N-(2-hydroxyphenyl)salicylaldimine (H 2 amp), 2,2'-dihydroxyazobenzene (H 2 azp), N-(2-carboxyphenyl)salicylaldimine (H 2 amc), or 2-hydroxy-2'-carboxy-5-methylazobenzene (H 2 azc). The ON ligand is deprotonated 8-quinolinol (Hhq), and the NN ligands are 2,2'- bipyridine (bpy) or 1,10-phenanthroline (phen). Reaction of VO(acac) 2 with a mixture of H 2 amp and bpy or Hhq in methanol affords V IV O(amp)(bpy) or V V O(amp)(hq)

Vibrio cholerae hemolysin (HlyA) is a 65-kDa water-soluble pore-forming toxin that causes lysis of eukaryotic cells by destroying selective permeability of the plasma membrane bilayer. The HlyA monomer self-assembles on the target cell surface to the more stable β-barrel amphipathic heptamer, which inserts into the membrane bilayer to form a diffusion channel. Deletion of the 15-kDa β-prism lectin domain at the C terminus generates a 50-kDa hemolysin variant (HlyA50) with an ∼1,000-fold decrease in hemolytic activity. Because functional differences are eventually dictated by structural differences, we determined three-dimensional structures of 65- and 50-kDa HlyA oligomers, using cryo-electron microscopy and single-particle methods. Our study clearly shows that the HlyA oligomer has sevenfold symmetry but that the HlyA50 oligomer is an asymmetric molecule. The HlyA oligomer has bowl-like, arm-like, and ring-like domains. The bowl-like domain is coupled with the ring-like domain, and seven side openings are present just beneath the ring-like domain. Although a central channel is present in both HlyA and HlyA50 oligomers, they differ in pore size as well as in shape of the molecules and channel. These structural differences may be relevant to the striking difference in efficiencies of functional channel formation by the two toxin forms.

The reaction of [VIVO(L)(H2O)] with ethane-1,2-diol (H2ed) in methanol in air afforded complexes of type [VVO(L)(Hed)] in very good yields (H2L1=N-salicylideneglycine, H2L2=N-salicylidene-L-phenylalanine). The crystal structure of [VO(L2)(Hed)] has revealed the presence of tridentate [L2]2– and bidentate Hed–. In the latter the alcoholic oxygen lies trans to the oxo atom. In the VO5N co-ordination sphere the five vanadium–oxygen lengths follow the order: oxo < alkoxidic < phenoxidic < carboxylic < alcoholic. The absolute configuration of the complex is CS. The lattice consists of hydrogen-bonded (between alcoholic and carboxylic oxygen atoms) dimers having two-fold symmetry. The CD spectrum of [VO(L2)(Hed)] has revealed the composite nature of the O(alkoxide)→ V charge-transfer band in the visible region. In the 1H NMR spectra of the complexes the four methylene protons of co-ordinated Hed– are inequivalent. The [VVO(L)(Hed)] complexes represent authentic examples of the very rare mononuclear oxovanadium species incorporating ethane-1,2-diol as a ligand.

In the title complex [VOL1L2] derived from the tridentate 2-hydroxy-2′-carboxy-5-methylazobenzene (H2L1) and the bidentate quinolin-8-ol (HL2) the V–O(carboxylate) and V–N(azo) distances are respectively 1.892(4) and 2.098(5)A; frozen solution (77 K) EPR parameters of electrogenerated [VOL1L2]– lie close to those of reduced bromoperoxidase (low pH).

In [L(O)VOV(O)L]–, the one-electron reduced form of structurally characterised [L(O)VOV(O)L](L = azobenzene-2,2′-diolate), metal valence is delocalised at 300 K but is localised at one centre at 77 K with average hyperfine coupling constants of ≈50 and ≈100 G respectively; the estimated rate constant is ≈4 × 1010 s–1(300 K) and the activation energy is ≈3 kcal mol–1.

Summary: Desensitization, signaling, and trafficking of G-protein-coupled receptors (GPCRs) are critically regulated by multifunctional adaptor proteins, β-arrestins (βarrs). The two isoforms of βarrs (βarr1 and 2) share a high degree of sequence and structural similarity; still, however, they often mediate distinct functional outcomes in the context of GPCR signaling and regulation. A mechanistic basis for such a functional divergence of βarr isoforms is still lacking. By using a set of complementary approaches, including antibody-fragment-based conformational sensors, we discover structural differences between βarr1 and 2 upon their interaction with activated and phosphorylated receptors. Interestingly, domain-swapped chimeras of βarrs display robust complementation in functional assays, thereby linking the structural differences between receptor-bound βarr1 and 2 with their divergent functional outcomes. Our findings reveal important insights into the ability of βarr isoforms to drive distinct functional outcomes and underscore the importance of integrating this aspect in the current framework of biased agonism. : Ghosh et al. discover structural differences between β-arrestin isoforms (β-arrestin 1 and 2), which are universal regulators of signaling and trafficking of G-protein-coupled receptors (GPCRs). These findings have direct implications for understanding the regulatory and signaling paradigms of GPCRs and designing novel therapeutics targeting this important class of receptors. Keywords: GPCRs, β-arrestins, cellular signaling, antibody fragments, biosensors, biased agonism, desensitization, negative staining, electron microscopy