536 results on '"Rubini, A"'
Search Results
2. Chemical Quest: general knowledge and popular culture quizzes about the elements in a board game for the class
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Bortoli Marco, Balasso Antonella, Carta Giovanni, Cestaro Maristella, Colla Viviana, De Togni Alessandra, Gallani Giulio, Giacometti Cristina, Gianni Laura, Giuffreda Lucia, Granella Manuela, Iarabek Marina, Lion Enrico, Mazzi Giuseppe, Migale Caterina, Milan Stefano, Molesini Paola, Moretto Mara, Predonzan Roberta, Priolisi Ornella, Romualdi Rosella, Rubini Cristina, Scarfì Sandra, Tobaldini Elena, Dalla Tiezza Marco, Nale Enrico, Bellanda Massimo, Kennedy Gordon, Sella Gianpietro, Lanza Alessandro, and Orian Laura
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periodic table of elements ,quizzes ,chemical knowledge ,popular culture ,stem ,clil ,Chemistry ,QD1-999 - Abstract
Chemical Quest is an innovative trivia game based on the 102 elements of the periodic table from H to No, developed collaboratively by upper secondary school and university teachers with the aim of increasing the interest of young students (age 14–18) in chemistry. As part of the project, a software version of the game was successfully played in 24 classes. ‘Challenging, sometimes difficult, highly instructive, relaxing, captivating, ….’ are some of the positive comments by students and teachers. In addition, Chemical Quest was conceived to be adaptable since the rules can be modified and the cards can be selected to match the educational objective.
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- 2023
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3. STAT3 Pathways Contribute to β-HCH Interference with Anticancer Tyrosine Kinase Inhibitors
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Sara Fiorini, Elisabetta Rubini, Monia Perugini, Fabio Altieri, Silvia Chichiarelli, Giorgia Meschiari, Giulia Arrighetti, John Vijgen, Pier Giorgio Natali, Marco Minacori, and Margherita Eufemi
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STAT3 ,β-hexachlorocyclohexane ,chemoresistance ,environmental pollutants ,signaling transduction ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Organochlorine pesticides (OCPs) are a class of environmentally persistent and bioaccumulative pollutants. Among these, β-hexachlorocyclohexane (β-HCH) is a byproduct of lindane synthesis, one of the most worldwide widespread pesticides. β-HCH cellular mechanisms inducing chemical carcinogenesis correspond to many of those inducing chemoresistance, in particular, by the activation of signal transducer and activator of transcription 3 (STAT3) signaling pathways. For this purpose, four cell lines, representative of breast, lung, prostate, and hepatocellular cancers, were treated with β-HCH, specific tyrosine kinase inhibitors (TKIs), and a STAT3 inhibitor. All cell samples were analyzed by a viability assay, immunoblotting analysis, a wound-healing assay, and a colony formation assay. The results show that β-HCH reduces the efficacy of TKIs. The STAT3 protein, in this context, plays a central role. In fact, by inhibiting its activity, the efficacy of the anticancer drug is restored. Furthermore, this manuscript aimed to draw the attention of the scientific and socio-healthcare community to the issue of prolonged exposure to contaminants and their impact on drug efficacy.
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- 2024
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4. The Role of WO3 Nanoparticles on the Properties of Gelatin Films
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Katia Rubini, Arianna Menichetti, Maria Cristina Cassani, Marco Montalti, Adriana Bigi, and Elisa Boanini
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tungsten ,photochromism ,biopolymers ,gelatin ,nanoparticles ,polymer films ,Science ,Chemistry ,QD1-999 ,Inorganic chemistry ,QD146-197 ,General. Including alchemy ,QD1-65 - Abstract
Gelatin films are very versatile materials whose properties can be tuned through functionalization with different systems. This work investigates the influence of WO3 nanoparticles on the swelling, barrier, mechanical, and photochromic properties of gelatin films. To this purpose, polyvinylpirrolidone (PVP)-stabilized WO3 nanoparticles were loaded on gelatin films at two different pH values, namely, 4 and 7. The values of swelling and solubility of functionalized films displayed a reduction of around 50% in comparison to those of pristine, unloaded films. In agreement, WO3 nanoparticles provoked a significant decrease in water vapor permeability, whereas the decrease in the values of elastic modulus (from about 2.0 to 0.7 MPa) and stress at break (from about 2.5 to 1.4 MPa) can be ascribed to the discontinuity created by the nanoparticles inside the films. The results of differential scanning calorimetry and X-ray diffraction analysis suggest that interaction of PVP with gelatin reduce gelatin renaturation. No significant differences were found between the samples prepared at pH 4 and 7, whereas crosslinking with glutaraldehyde greatly influenced the properties of gelatin films. Moreover, the incorporation of WO3 nanoparticles in gelatin films, especially in the absence of glutaraldehyde, conferred excellent photochromic properties, inducing the appearance of an intense blue color after a few seconds of light irradiation and providing good resistance to several irradiation cycles.
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- 2024
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5. Incorporation/Enrichment of 3D Bioprinted Constructs by Biomimetic Nanoparticles: Tuning Printability and Cell Behavior in Bone Models
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Tiziana Fischetti, Giorgia Borciani, Sofia Avnet, Katia Rubini, Nicola Baldini, Gabriela Graziani, and Elisa Boanini
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hydroxyapatite ,strontium ,composite hydrogel ,bioink ,3D bioprinting ,tissue model ,Chemistry ,QD1-999 - Abstract
Reproducing in vitro a model of the bone microenvironment is a current need. Preclinical in vitro screening, drug discovery, as well as pathophysiology studies may benefit from in vitro three-dimensional (3D) bone models, which permit high-throughput screening, low costs, and high reproducibility, overcoming the limitations of the conventional two-dimensional cell cultures. In order to obtain these models, 3D bioprinting offers new perspectives by allowing a combination of advanced techniques and inks. In this context, we propose the use of hydroxyapatite nanoparticles, assimilated to the mineral component of bone, as a route to tune the printability and the characteristics of the scaffold and to guide cell behavior. To this aim, both stoichiometric and Sr-substituted hydroxyapatite nanocrystals are used, so as to obtain different particle shapes and solubility. Our findings show that the nanoparticles have the desired shape and composition and that they can be embedded in the inks without loss of cell viability. Both Sr-containing and stoichiometric hydroxyapatite crystals permit enhancing the printing fidelity of the scaffolds in a particle-dependent fashion and control the swelling behavior and ion release of the scaffolds. Once Saos-2 cells are encapsulated in the scaffolds, high cell viability is detected until late time points, with a good cellular distribution throughout the material. We also show that even minor modifications in the hydroxyapatite particle characteristics result in a significantly different behavior of the scaffolds. This indicates that the use of calcium phosphate nanocrystals and structural ion-substitution is a promising approach to tune the behavior of 3D bioprinted constructs.
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- 2023
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6. Can New Ultrasound Imaging Techniques Improve Breast Lesion Characterization? Prospective Comparison between Ultrasound BI-RADS and Semi-Automatic Software 'SmartBreast', Strain Elastography, and Shear Wave Elastography
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Olga Guiban, Antonello Rubini, Gianfranco Vallone, Corrado Caiazzo, Marco Di Serafino, Federica Pediconi, Laura Ballesio, Federica Trenta, Corrado De Vito, Arenta Shkelqimi, Ludovica Costanzo, Daniele Fresilli, Veronica Rizzo, Vito Cantisani, and Massimo Vergine
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ultrasound ,computer-aided diagnosis ,“SmartBreast” ,strain elastography ,shear wave elastography ,pSWE ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Background: Ultrasound plays a crucial role in early diagnosis of breast cancer. The aim of this research is to evaluate the diagnostic performance of BI-RADS classification in comparison with new semi-automatic software Resona R9, Mindray, “SmartBreast” and strain elastography (SE), point shear wave (pSWE), and 2D shear wave (2D SWE) Elastography for breast lesion differentiation. Methods: Ninety-two breast nodules classified according to BI-RADS lexicon by an expert radiologist were evaluated by a second investigator with B-mode ultrasound, color Doppler, “SmartBreast”, and elastography. Histopathology was considered the gold standard. Results: The agreement between software and investigator was excellent in the identification of the posterior features of breast masses (Cohen’s k = 0.94), good for shape and vascular signal (Cohen’s k, respectively, of 0.6 and 0.65), poor for orientation, margins, and echo pattern (Cohen’s k, respectively, of 0.28, 0.33 and 0.48), moderate for dimensions (Lin’s correlation coefficient of 0.90, p = 0.07). SE showed a greater area under curve (AUC) than pSWE and 2D SWE (0.84, 0.64, and 0.61, respectively), with a greater specificity and a comparable sensitivity to pSWE (respectively, of 0.86 and 0.55, 0.81 and 0.84). Conclusions: SE improved the diagnostic performance of BI-RADS classification more than pSWE and 2D SWE; “SmartBreast” showed good agreement only for shape and vascularization but not for the other ultrasound features of breast lesions.
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- 2023
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7. Ionized Jet Deposition of Calcium Phosphates-Based Nanocoatings: Tuning Coating Properties and Cell Behavior by Target Composition and Substrate Heating
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Matteo Montesissa, Giorgia Borciani, Katia Rubini, Francesco Valle, Marco Boi, Nicola Baldini, Elisa Boanini, and Gabriela Graziani
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coatings ,orthopedics ,dentistry ,calcium phosphates ,ionized jet deposition ,hydroxyapatite ,Chemistry ,QD1-999 - Abstract
Calcium phosphate-based coatings are widely studied in orthopedics and dentistry for their similarity to the mineral component of bone and their capability to promote osseointegration. Different calcium phosphates have tunable properties that result in different behaviors in vitro, but the majority of studies focus only on hydroxyapatite. Here, different calcium phosphate-based nanostructured coatings are obtained by ionized jet deposition, starting with hydroxyapatite, brushite and beta-tricalcium phosphate targets. The properties of the coatings obtained from different precursors are systematically compared by assessing their composition, morphology, physical and mechanical properties, dissolution, and in vitro behavior. In addition, for the first time, depositions at high temperature are investigated for the further tuning of the coatings mechanical properties and stability. Results show that different phosphates can be deposited with good composition fidelity even if not in a crystalline phase. All coatings are nanostructured and non-cytotoxic and display variable surface roughness and wettability. Upon heating, higher adhesion and hydrophilicity are obtained as well as higher stability, resulting in better cell viability. Interestingly, different phosphates show very different in vitro behavior, with brushite being the most suitable for promoting cell viability and beta-tricalcium phosphate having a higher impact on cell morphology at the early timepoints.
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- 2023
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8. A Comparison of Shell Theories for Vibration Analysis of Single-Walled Carbon Nanotubes Based on an Anisotropic Elastic Shell Model
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Matteo Strozzi, Isaac E. Elishakoff, Michele Bochicchio, Marco Cocconcelli, Riccardo Rubini, and Enrico Radi
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carbon nanotubes ,vibration analysis ,anisotropic elastic model ,shell theories ,natural frequencies ,Chemistry ,QD1-999 - Abstract
In the present paper, a comparison is conducted between three classical shell theories as applied to the linear vibrations of single-walled carbon nanotubes (SWCNTs); specifically, the evaluation of the natural frequencies is conducted via Donnell, Sanders, and Flügge shell theories. The actual discrete SWCNT is modelled by means of a continuous homogeneous cylindrical shell considering equivalent thickness and surface density. In order to take into account the intrinsic chirality of carbon nanotubes (CNTs), a molecular based anisotropic elastic shell model is considered. Simply supported boundary conditions are imposed and a complex method is applied to solve the equations of motion and to obtain the natural frequencies. Comparisons with the results of molecular dynamics simulations available in literature are performed to check the accuracy of the three different shell theories, where the Flügge shell theory is found to be the most accurate. Then, a parametric analysis evaluating the effect of diameter, aspect ratio, and number of waves along the longitudinal and circumferential directions on the natural frequencies of SWCNTs is performed in the framework of the three different shell theories. Assuming the results of the Flügge shell theory as reference, it is obtained that the Donnell shell theory is not accurate for relatively low longitudinal and circumferential wavenumbers, for relatively low diameters, and for relatively high aspect ratios. On the other hand, it is found that the Sanders shell theory is very accurate for all the considered geometries and wavenumbers, and therefore, it can be correctly adopted instead of the more complex Flügge shell theory for the vibration modelling of SWCNTs.
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- 2023
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9. When Just One Phosphate Is One Too Many: The Multifaceted Interplay between Myc and Kinases
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Dalila Boi, Elisabetta Rubini, Sara Breccia, Giulia Guarguaglini, and Alessandro Paiardini
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Myc ,kinases ,PLK1 ,Aurora-A ,Aurora-B ,GSK-3 ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Myc transcription factors are key regulators of many cellular processes, with Myc target genes crucially implicated in the management of cell proliferation and stem pluripotency, energy metabolism, protein synthesis, angiogenesis, DNA damage response, and apoptosis. Given the wide involvement of Myc in cellular dynamics, it is not surprising that its overexpression is frequently associated with cancer. Noteworthy, in cancer cells where high Myc levels are maintained, the overexpression of Myc-associated kinases is often observed and required to foster tumour cells’ proliferation. A mutual interplay exists between Myc and kinases: the latter, which are Myc transcriptional targets, phosphorylate Myc, allowing its transcriptional activity, highlighting a clear regulatory loop. At the protein level, Myc activity and turnover is also tightly regulated by kinases, with a finely tuned balance between translation and rapid protein degradation. In this perspective, we focus on the cross-regulation of Myc and its associated protein kinases underlying similar and redundant mechanisms of regulation at different levels, from transcriptional to post-translational events. Furthermore, a review of the indirect effects of known kinase inhibitors on Myc provides an opportunity to identify alternative and combined therapeutic approaches for cancer treatment.
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- 2023
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10. Learning Chemistry in English: The Relationship between Language Skills and Learning Outcomes
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Rudi Firmayanto, Leny Heliawati, and Bibin Rubini
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chemistry ,english ,language skills ,learning outcomes ,Education ,Education (General) ,L7-991 - Abstract
The study aims to analyze the relationship between English language skills and the students' learning outcomes in chemistry learning that uses English as the medium of instruction (EMI). This qualitative descriptive study was conducted on 40 high school students. Data is collected and analyzed in the form of the test result of the language skills and learning outcomes. The results for students' language skills: 75 % of students are at level A2 (primary user), 15 % are at level B1 (intermediate), 5 % are at level B2 (upper-intermediate), and 5 % are at level C1 (advance/proficient user). The students' chemistry learning results are averagely low, i.e., 70 % of students gained a score under 75 as the minimum criteria of standard learning, only 30 % of students reached the score above the KKM (Criteria of Minimum Competency). The conclusion of this research is that there is a relationship between language skills and chemistry learning outcomes. Learning chemistry in English has not given good results for students' learning outcomes. Therefore, the demands of learning in English need to be supported by good language skills to understand the learning content.
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- 2020
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11. MTHFR c.665C>T and c.1298A>C Polymorphisms in Tailoring Personalized Anti-TNF-α Therapy for Rheumatoid Arthritis
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Amin Ravaei, Lia Pulsatelli, Elisa Assirelli, Jacopo Ciaffi, Riccardo Meliconi, Carlo Salvarani, Marcello Govoni, and Michele Rubini
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rheumatoid arthritis ,TNF-α inhibitors ,genetic association ,MTHFR ,biomarkers ,pharmacogenetics ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Rheumatoid arthritis (RA) is an inflammatory autoimmune disease with a prevalence of 1%. Currently, RA treatment aims to achieve low disease activity or remission. Failure to achieve this goal causes disease progression with a poor prognosis. When treatment with first-line drugs fails, treatment with tumor necrosis factor-α (TNF-α) inhibitors may be prescribed to which many patients do not respond adequately, making the identification of response markers urgent. This study investigated the association of two RA-related genetic polymorphisms, c.665C>T (historically referred to as C677T) and c.1298A>C, in the MTHFR gene as response markers to an anti-TNF-α therapy. A total of 81 patients were enrolled, 60% of whom responded to the therapy. Analyses showed that both polymorphisms were associated with a response to therapy in an allele dose-dependent manner. The association for c.665C>T was significant for a rare genotype (p = 0.01). However, the observed opposite trend of association for c.1298A>C was not significant. An analysis revealed that c.1298A>C, unlike c.665C>T, was also significantly associated with the drug type (p = 0.032). Our preliminary results showed that the genetic polymorphisms in the MTHFR gene were associated with a response to anti-TNF-α therapy, with a potential significance for the anti-TNF-α drug type. This evidence suggests a role for one-carbon metabolism in anti-TNF-α drug efficacy and contributes to further personalized RA interventions.
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- 2023
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12. Serum Biomarkers of Renal Fibrosis: A Systematic Review
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Alice Barinotti, Massimo Radin, Irene Cecchi, Silvia Grazietta Foddai, Elena Rubini, Dario Roccatello, and Savino Sciascia
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chronic kidney disease ,renal fibrosis ,biomarkers ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Chronic kidney disease (CKD) is a widely diffuse pathological condition which deeply impacts upon an affected patient’s quality of life and its worldwide rate is predicted to further rise. The main biological mechanism underlying CKD is renal fibrosis, a non-reversible process representing, for the affected system, a point of no return of tissue damage and dysfunction, deeply reducing the possible therapeutic strategies at the disposal of physicians. The best tool clinicians can use to address the extent of renal fibrosis at any level (glomeruli, tubule-interstitium, vasculature) is kidney biopsy that, despite its overall safety, remains an invasive procedure showing some shortcomings. Thus, the identification of novel non-invasive renal fibrosis biomarkers would be of fundamental importance. Here, when systematically reviewing the available evidence on serological biomarkers associated with renal fibrosis evaluated in patients suffering from CKD in the last five years, we found that despite the presence of several promising biomarkers, the level of observed evidence is still very scattered. Probably, the use of multiple measures capable of addressing different aspects involved in this condition would be the most suitable way to capture the high complexity characterizing the renal fibrotic process, having consequently a great impact on clinical practice by maximizing prevention, diagnosis, and management.
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- 2022
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13. Simplified in Vitro and in Vivo Bioaccess to Prenylated Compounds
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Julie Couillaud, Juan Rico, Alyssa Rubini, Tarek Hamrouni, Elise Courvoisier-Dezord, Jean-Louis Petit, Aline Mariage, Ekaterina Darii, Katia Duquesne, Véronique de Berardinis, and Gilles Iacazio
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Chemistry ,QD1-999 - Published
- 2019
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14. High, in Contrast to Low Levels of Acute Stress Induce Depressive-like Behavior by Involving Astrocytic, in Addition to Microglial P2X7 Receptors in the Rodent Hippocampus
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Ya-Fei Zhao, Wen-Jing Ren, Ying Zhang, Jin-Rong He, Hai-Yan Yin, Yang Liao, Patrizia Rubini, Jan M. Deussing, Alexei Verkhratsky, Zeng-Qiang Yuan, Peter Illes, and Yong Tang
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major depression ,extracellular ATP ,P2X7 receptor ,hippocampus ,rat ,mouse ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Extracellular adenosine 5′-triphosphate (ATP) in the brain is suggested to be an etiological factor of major depressive disorder (MDD). It has been assumed that stress-released ATP stimulates P2X7 receptors (Rs) at the microglia, thereby causing neuroinflammation; however, other central nervous system (CNS) cell types such as astrocytes also possess P2X7Rs. In order to elucidate the possible involvement of the MDD-relevant hippocampal astrocytes in the development of a depressive-like state, we used various behavioral tests (tail suspension test [TST], forced swim test [FST], restraint stress, inescapable foot shock, unpredictable chronic mild stress [UCMS]), as well as fluorescence immunohistochemistry, and patch-clamp electrophysiology in wild-type (WT) and genetically manipulated rodents. The TST and FST resulted in learned helplessness manifested as a prolongation of the immobility time, while inescapable foot shock caused lower sucrose consumption as a sign of anhedonia. We confirmed the participation of P2X7Rs in the development of the depressive-like behaviors in all forms of acute (TST, FST, foot shock) and chronic stress (UCMS) in the rodent models used. Further, pharmacological agonists and antagonists acted in a different manner in rats and mice due to their diverse potencies at the respective receptor orthologs. In hippocampal slices of mice and rats, only foot shock increased the current responses to locally applied dibenzoyl-ATP (Bz-ATP) in CA1 astrocytes; in contrast, TST and restraint depressed these responses. Following stressful stimuli, immunohistochemistry demonstrated an increased co-localization of P2X7Rs with a microglial marker, but no change in co-localization with an astroglial marker. Pharmacological damage to the microglia and astroglia has proven the significance of the microglia for mediating all types of depression-like behavioral reactions, while the astroglia participated only in reactions induced by strong stressors, such as foot shock. Because, in addition to acute stressors, their chronic counterparts induce a depressive-like state in rodents via P2X7R activation, we suggest that our data may have relevance for the etiology of MDD in humans.
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- 2022
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15. Inherent P2X7 Receptors Regulate Macrophage Functions during Inflammatory Diseases
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Wenjing Ren, Patrizia Rubini, Yong Tang, Tobias Engel, and Peter Illes
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macrophages ,P2X7R ,pore formation ,inflammasome activation ,inflammatory diseases ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Macrophages are mononuclear phagocytes which derive either from blood-borne monocytes or reside as resident macrophages in peripheral (Kupffer cells of the liver, marginal zone macrophages of the spleen, alveolar macrophages of the lung) and central tissue (microglia). They occur as M1 (pro-inflammatory; classic) or M2 (anti-inflammatory; alternatively activated) phenotypes. Macrophages possess P2X7 receptors (Rs) which respond to high concentrations of extracellular ATP under pathological conditions by allowing the non-selective fluxes of cations (Na+, Ca2+, K+). Activation of P2X7Rs by still higher concentrations of ATP, especially after repetitive agonist application, leads to the opening of membrane pores permeable to ~900 Da molecules. For this effect an interaction of the P2X7R with a range of other membrane channels (e.g., P2X4R, transient receptor potential A1 [TRPA1], pannexin-1 hemichannel, ANO6 chloride channel) is required. Macrophage-localized P2X7Rs have to be co-activated with the lipopolysaccharide-sensitive toll-like receptor 4 (TLR4) in order to induce the formation of the inflammasome 3 (NLRP3), which then activates the pro-interleukin-1β (pro-IL-1β)-degrading caspase-1 to lead to IL-1β release. Moreover, inflammatory diseases (e.g., rheumatoid arthritis, Crohn’s disease, sepsis, etc.) are generated downstream of the P2X7R-induced upregulation of intracellular second messengers (e.g., phospholipase A2, p38 mitogen-activated kinase, and rho G proteins). In conclusion, P2X7Rs at macrophages appear to be important targets to preserve immune homeostasis with possible therapeutic consequences.
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- 2021
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16. Structural interplay between strontium and calcium in α-CaHPO4 and β-SrHPO4
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Elisa Boanini, Massimo Gazzano, Katia Rubini, Adriana Bigi, Paolo Pio Mazzeo, Boanini E., Gazzano M., Rubini K., Mazzeo P.P., and Bigi A.
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musculoskeletal diseases ,inorganic chemicals ,phosphates ,Materials science ,Strontium phosphate ,Inorganic chemistry ,chemistry.chemical_element ,02 engineering and technology ,Thermal treatment ,Crystal structure ,Calcium ,01 natural sciences ,chemistry.chemical_compound ,Monetite ,0103 physical sciences ,Materials Chemistry ,Brushite ,010302 applied physics ,Strontium ,Aqueous solution ,Process Chemistry and Technology ,021001 nanoscience & nanotechnology ,Phosphate ,Ionic substitution ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Calcium phosphate ,chemistry ,Ceramics and Composites ,0210 nano-technology ,biomaterials ,Monoclinic crystal system - Abstract
The ability of strontium ion to inhibit the abnormally high bone resorption, which occurs in pathologies characterized by loss of bone substance, has stimulated a number of research on strontium substituted/doped calcium phosphates. However, no information was available up to now on strontium substitution to calcium in the structure of α-CaHPO4, monetite, in spite of the involvement of this phosphate in the composition of biomaterials for hard tissue substitution/repair and although it is isomorphous with α-SrHPO4. Herein, we investigated the substitution of strontium to calcium in the structure of α-CaHPO4, as well as the replacement of calcium for strontium in the structure of a further polymorph of SrHPO4, namely β-SrHPO4. To this purpose, monetite at increasing degree of strontium substitution for calcium was synthesized by means of direct synthesis in aqueous solution, as well as through thermal treatment of strontium-substituted brushite; whereas the synthesis of β-SrHPO4 was carried out at low temperature. The results of structural refinements, spectroscopic analysis and electron microscopy investigation indicate that the method of synthesis has a great influence on the range of strontium incorporation into α-CaHPO4, which can reach 100 at%. The morphology of the synthesized materials is also remarkably dependent on composition. The analysis of the products synthesized at low temperature shows that the upper limit of possible substitution of calcium to strontium in the structure of β-SrHPO4 is much more limited, just up to about 20 at%. Moreover, powder X-ray analysis of β-SrHPO4 states that it crystallizes with a monoclinic cell in the space group P21/c.
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- 2021
17. A Porous Media Model for the Numerical Simulation of Acoustic Attenuation by Perforated Liners in the Presence of Grazing Flows
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Jianguo Wang, Philip Rubini, and Qin Qin
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perforated liners ,acoustic damping ,porous media model ,acoustic passive control ,numerical simulation ,combustion instability ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In this paper, a novel model is proposed for the numerical simulation of noise-attenuating perforated liners. Effusion cooling liners offer the potential of being able to attenuate combustion instabilities in gas turbine engines. However, the acoustic attenuation of a perforated liner is a combination of a number of interacting factors, resulting in the traditional approach of designing perforated combustor liners relying heavily on combustor rig tests. On the other hand, direct computation of thousands of small-scale holes is too expensive to be employed as an engineering design tool. In recognition of this, a novel physical velocity porous media (PVPM) model was recently proposed by the authors as a computationally less demanding approach to represent the acoustic attenuation of perforated liners. The model was previously validated for the normal incidence of a sound wave by comparison with experimental data from impedance tubes. In this paper, the model is further developed for configurations where the noise signal propagates in parallel with the perforated liners, both in the presence and absence of a mean flow. The model is significantly improved and successfully validated within coexisting grazing and bias flow scenarios, with reference to a series of well-recognized experimental data.
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- 2021
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18. β-Hexachlorocyclohexane Drives Carcinogenesis in the Human Normal Bronchial Epithelium Cell Line BEAS-2B
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Elisabetta Rubini, Marco Minacori, Giuliano Paglia, Fabio Altieri, Silvia Chichiarelli, Donatella Romaniello, and Margherita Eufemi
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β hexachlorocyclohexane (β-HCH) ,carcinogenesis ,organochlorine pollutants (OCPs) ,signal transduction ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Organochlorine pesticides constitute the majority of the total environmental pollutants, and a wide range of compounds have been found to be carcinogenic to humans. Among all, growing interest has been focused on β-hexachlorocyclohexane (β-HCH), virtually the most hazardous and, at the same time, the most poorly investigated member of the hexachlorocyclohexane family. Considering the multifaceted biochemical activities of β-HCH, already established in our previous studies, the aim of this work is to assess whether β-HCH could also trigger cellular malignant transformation toward cancer development. For this purpose, experiments were performed on the human normal bronchial epithelium cell line BEAS-2B exposed to 10 µM β-HCH. The obtained results strongly support the carcinogenic potential of β-HCH, which is achieved through both non-genotoxic (activation of oncogenic signaling pathways and proliferative activity) and indirect genotoxic (ROS production and DNA damage) mechanisms that significantly affect cellular macroscopic characteristics and functions such as cell morphology, cell cycle profile, and apoptosis. Taking all these elements into account, the presented study provides important elements to further characterize β-HCH, which appears to be a full-fledged carcinogenic agent.
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- 2021
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19. Genetic Factors in Antiphospholipid Syndrome: Preliminary Experience with Whole Exome Sequencing
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Alice Barinotti, Massimo Radin, Irene Cecchi, Silvia Grazietta Foddai, Elena Rubini, Dario Roccatello, Savino Sciascia, and Elisa Menegatti
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antiphospholipid syndrome ,immunogenetics ,whole exome sequencing ,network-based approach ,antiphospholipid antibodies ,thrombosis ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
As in many autoimmune diseases, the pathogenesis of the antiphospholipid syndrome (APS) is the result of a complex interplay between predisposing genes and triggering environmental factors, leading to a loss of self-tolerance and immune-mediated tissue damage. While the first genetic studies in APS focused primarily on the human leukocytes antigen system (HLA) region, more recent data highlighted the role of other genes in APS susceptibility, including those involved in the immune response and in the hemostatic process. In order to join this intriguing debate, we analyzed the single-nucleotide polymorphisms (SNPs) derived from the whole exome sequencing (WES) of two siblings affected by APS and compared our findings with the available literature. We identified genes encoding proteins involved in the hemostatic process, the immune response, and the phospholipid metabolism (PLA2G6, HSPG2, BCL3, ZFAT, ATP2B2, CRTC3, and ADCY3) of potential interest when debating the pathogenesis of the syndrome. The study of the selected SNPs in a larger cohort of APS patients and the integration of WES results with the network-based approaches will help decipher the genetic risk factors involved in the diverse clinical features of APS.
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- 2020
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20. A Cu(<scp>ii</scp>)-MOF based on a propargyl carbamate-functionalized isophthalate ligand
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Norberto Masciocchi, Alessandro Kovtun, Davide Barreca, Ilaria Ragazzini, Francesca Gambassi, Chiara Maccato, Elisa Boanini, Maria Cristina Cassani, Katia Rubini, Antonietta Guagliardi, Daniele Nanni, Barbara Ballarin, Cassani M.C., Gambassi F., Ballarin B., Nanni D., Ragazzini I., Barreca D., Maccato C., Guagliardi A., Masciocchi N., Kovtun A., Rubini K., and Boanini E.
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General Chemical Engineering ,Complex networks ,Alkyne ,Crystal atomic structure ,Spectroscopic analysis ,Catalysis ,Isophthalic acid ,chemistry.chemical_compound ,Carboxylation ,X-ray photoelectron spectroscopy ,characterization ,structure ,Lewis acids and bases ,Copper metallography ,Hydrocarbons ,Metal-Organic Frameworks ,Organometallics ,MOF ,chemistry.chemical_classification ,Metal Organic Framework, copper, benzene dicarboxylate, propargyl carbamate, synchrotron X-ray powder diffraction ,Chemistry ,Ligand ,General Chemistry ,Crystallography ,Propargyl ,Metal-organic framework ,isophthalate - Abstract
A copper-based metal-organic framework (MOF) was prepared using a new linker, a 5-substituted isophthalic acid bearing a propargyl carbamate group, intended to provide a terminal alkyne function protruding from the material surface to generate supported gold species for potential catalytic applications. The novel material was fully characterized by spectroscopic analyses of different kinds: FTIR, Raman, EDX, and XPS, as well as by thermal and surface area measurements. Synchrotron X-ray diffraction data analysis, in particular, revealed that this MOF, labelled [Cu(1,3-YBDC)]xH2O (x ca. 2), where Y stands for the pendant alkYne and BDC for benzene dicarboxylate, contains a complex network of 5-substituted isophthalate anions bound to Cu(II) centers, arranged in pairs within paddlewheel (or "Chinese lantern") fragments of Cu2(mu-COO)4(D)2 formulation (D being a neutral Lewis base), with a short Cu/Cu distance of 2.633(4) Angstrom. Quite unexpectedly, the apical atom in the paddlewheel structure belongs to the carbamate carbonyl oxygen atom. Such extra coordination by the propargyl carbamate groups drastically reduces the MOF porosity, a feature that was also confirmed by BET measurements. However, the MOF functionality is retained at the external crystal surface where 2% of active terminal alkynes is located.
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- 2021
21. Protein Design with Fluoroprolines: 4,4‐Difluoroproline Does Not Eliminate the Rate‐Limiting Step of Thioredoxin Folding
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Marina Rubini, Jennie O' Loughlin, and Silvia Napolitano
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chemistry.chemical_classification ,Protein Folding ,Proline ,Globular protein ,Stereochemistry ,Organic Chemistry ,Protein design ,thioredoxin fold ,Protein engineering ,Thioredoxin fold ,Biochemistry ,Protein tertiary structure ,protein design ,protein folding ,protein stability ,4,4-difluoroproline ,Thioredoxins ,chemistry ,Humans ,Thermodynamics ,Molecular Medicine ,Peptide bond ,Protein folding ,Thioredoxin ,Molecular Biology - Abstract
C⁴-substituted fluoroprolines (4R)-fluoroproline ((4R)-Flp) and (4S)-fluoroproline ((4S)-Flp) have been used in protein engineering to enhance the thermodynamic stability of peptides and proteins. The electron-withdrawing effect of fluorine can bias the pucker of the pyrrolidine ring, influence the conformational preference of the preceding peptide bond, and can accelerate the cis/trans prolyl peptide bond isomerisation by diminishing its double bond character. The role of 4,4-difluoroproline (Dfp) in the acceleration of the refolding rate of globular proteins bearing a proline (Pro) residue in the cis conformation in the native state remains elusive. Moreover, the impact of Dfp on the thermodynamic stability and bioactivity of globular proteins has been seldom described. In this study, we show that the incorporation of Dfp caused a redox state dependent and position dependent destabilisation of the thioredoxin (Trx) fold, while the catalytic activities of the modified proteins remained unchanged. The Pro to Dfp substitution at the conserved cisPro76 in the thioredoxin variant Trx1P did not elicited acceleration of the rate-limiting trans-to-cis isomerization of the Ile75-Pro76 peptide bond. Our results show that pucker preferences in the context of a tertiary structure could play a major role in protein folding, thus overtaking the rules determined for cis/trans isomerisation barriers determined in model peptides., ChemBioChem, 22 (23), ISSN:1439-4227, ISSN:1439-7633
- Published
- 2021
22. Platinum nanoparticles supported on functionalized hydroxyapatite: Anti-oxidant properties and bone cells response
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Maria Cristina Cassani, Milena Fini, Elisa Boanini, Katia Rubini, Adriana Bigi, Paola Torricelli, Stefania Pagani, Boanini E., Torricelli P., Cassani M.C., Rubini K., Fini M., Pagani S., and Bigi A.
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Materials science ,Osteosarcoma cell line ,Nanoparticle ,chemistry.chemical_element ,02 engineering and technology ,Platinum nanoparticles ,01 natural sciences ,Hydroxyapatite ,0103 physical sciences ,Materials Chemistry ,medicine ,Primary osteoblasts ,Platinum ,010302 applied physics ,chemistry.chemical_classification ,Reactive oxygen species ,Quenching (fluorescence) ,Process Chemistry and Technology ,Osteoblast ,021001 nanoscience & nanotechnology ,Polyelectrolyte ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,medicine.anatomical_structure ,Chemical engineering ,chemistry ,Ceramics and Composites ,Oxidative stre ,Alkaline phosphatase ,0210 nano-technology - Abstract
Platinum ions and nanoparticles applications in the biomedical field include a number of pathologies. In particular, platinum ions are useful in the preparation of antitumoral drugs, whereas Pt nanoparticles (PtNPs) are known to reduce cellular oxidative stress. Herein, we developed composite materials using poly(ethylenimine) functionalized hydroxyapatite (HAPEI) as support for platinum. The presence of polyelectrolyte promotes interaction with platinum ion, which is loaded in greater amount than on pure hydroxyapatite. The dimensions of PtNPs are very small (about 1 nm), but increase up to about 20–30 nm on heat treatment. Loading Pt(II) ion on the apatitic supports provide a material with cytotoxic properties towards osteosarcoma derived cell lines (SaOS2 and MG63). On the contrary, PtNPs loaded apatitic supports display good anti-oxidant properties, in agreement with their quenching activity towards H2O2. Moreover, they promote differentiation of both primary osteoblast and osteoblast cell line, as shown by the increase of the levels of Alkaline Phosphatase and Collagen type 1, and reduce the level of reactive oxygen species with a consequent decrease of cellular oxidative stress.
- Published
- 2020
23. Metal Sulfide Nanoparticles Based Phytolectin Scaffolds Inhibit Vulvovaginal Candidiasis Causing Candida albicans
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Lakshmi Krishnasamy, Sivaranjani Ravichandran, Siva BalaSubramaniyan, Rubini Durairajan, Nithyanand Paramasivam, Jayasankari Senthilganesh, and Anbazhagan Veerappan
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biology ,Chemistry ,technology, industry, and agriculture ,Antifungal drug ,Micafungin ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,biology.organism_classification ,01 natural sciences ,Biochemistry ,Corpus albicans ,0104 chemical sciences ,Microbiology ,Minimum inhibitory concentration ,Amphotericin B ,medicine ,General Materials Science ,Efflux ,0210 nano-technology ,Drug carrier ,Candida albicans ,medicine.drug - Abstract
Vulvovaginal candidiasis (VVC) is a most common infection caused by Candida species especially, Candida albicans. Herein, we report that phytoprotein based nano scaffolds mitigates the standard antifungal drug (fluconazole) resistant C. albicans. Copper sulfide nanoparticles (CuS NPs) and the phytolectin, jacalin functionalized copper sulfide nanoparticles (JCuS NPs) were evaluated against C. albicans cells. The minimum inhibitory concentration of JCuS NPs (0.1 µM) was tenfold lower than CuS NPs (1 µM). Kill curve assay showed that the NPs exhibit anticandidal activity in a time dependent manner. Standard antifungal drugs like Amphotericin B (AMP B) and Micafungin (MF) were evaluated individually against VVC causing Candida sp. and also combined with NPs to determine their synergistic effect. Interestingly, MF which belongs to echinocandins group of antifungals exhibhited synergistic activity and AMP B which belongs to polyenes group displayed an additive effect. Molecular level studies revealed that JCuS NPs in combination with micafungin inhibits the drug resistant efflux pump of C. albicans by down-regulating the efflux genes. The results revealed that JCuS NPs and its combination with standard drugs have a better anti-candidal effect, suggesting that the lectins has the potential to serve as a drug carrier by targeting the cell surface glycans of Candida.
- Published
- 2021
24. STAT3 Post-Translational Modifications Drive Cellular Signaling Pathways in Prostate Cancer Cells
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Rossana Cocchiola, Elisabetta Rubini, Fabio Altieri, Silvia Chichiarelli, Giuliano Paglia, Donatella Romaniello, Stefania Carissimi, Alessandra Giorgi, Flavia Giamogante, Alberto Macone, Giacomo Perugia, Aymone Gurtner, and Margherita Eufemi
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STAT3 ,post translational modification ,prostate cancer ,transduction signaling ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
STAT3 is an oncoprotein overexpressed in different types of tumors, including prostate cancer (PCa), and its activity is modulated by a variety of post-translational modifications (PTMs). Prostate cancer represents the most common cancer diagnosed in men, and each phase of tumor progression displays specific cellular conditions: inflammation is predominant in tumor’s early stage, whereas oxidative stress is typical of clinically advanced PCa. The aim of this research is to assess the correspondence between the stimulus-specificity of STAT3 PTMs and definite STAT3-mediated transcriptional programs, in order to identify new suitable pharmacological targets for PCa treatment. Experiments were performed on less-aggressive LNCaP and more aggressive DU-145 cell lines, simulating inflammatory and oxidative-stress conditions. Cellular studies confirmed pY705-STAT3 as common denominator of all STAT3-mediated signaling. In addition, acK685-STAT3 was found in response to IL-6, whereas glutC328/542-STAT3 and pS727-STAT3 occurred upon tert-butyl hydroperoxyde (tBHP) treatment. Obtained results also provided evidence of an interplay between STAT3 PTMs and specific protein interactors such as P300 and APE1/Ref-1. In accordance with these outcomes, mRNA levels of STAT3-target genes seemed to follow the differing STAT3 PTMs. These results highlighted the role of STAT3 and its PTMs as drivers in the progression of PCa.
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- 2019
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25. A Model to Predict Acoustic Resonant Frequencies of Distributed Helmholtz Resonators on Gas Turbine Engines
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Jianguo Wang, Philip Rubini, Qin Qin, and Brian Houston
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distributed Helmholtz resonator ,acoustic radiation ,hole-hole interaction effect ,acoustic passive control ,gas turbine ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Helmholtz resonators, traditionally designed as a narrow neck backed by a cavity, are widely applied to attenuate combustion instabilities in gas turbine engines. The use of multiple small holes with an equivalent open area to that of a single neck has been found to be able to significantly improve the noise damping bandwidth. This type of resonator is often referred to as “distributed Helmholtz resonator„. When multiple holes are employed, interactions between acoustic radiations from neighboring holes changes the resonance frequency of the resonator. In this work, the resonance frequencies from a series of distributed Helmholtz resonators were obtained via a series of highly resolved computational fluid dynamics simulations. A regression analysis of the resulting response surface was undertaken and validated by comparison with experimental results for a series of eighteen absorbers with geometries typically employed in gas turbine combustors. The resulting model demonstrates that the acoustic end correction length for perforations is closely related to the effective porosity of the perforated plate and will be obviously enhanced by acoustic radiation effect from the perforation area as a whole. This model is easily applicable for engineers in the design of practical distributed Helmholtz resonators.
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- 2019
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26. Therapeutic Potential of Autologous Adipose-Derived Stem Cells for the Treatment of Liver Disease
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Chiara Gardin, Letizia Ferroni, Gloria Bellin, Giuseppe Rubini, Simone Barosio, and Barbara Zavan
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adipose-derived stem cells (ADSCs) ,liver disease ,immunomodulatory properties ,autologous cell transplantation ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Currently, the most effective therapy for liver diseases is liver transplantation, but its use is limited by organ donor shortage, economic reasons, and the requirement for lifelong immunosuppression. Mesenchymal stem cell (MSC) transplantation represents a promising alternative for treating liver pathologies in both human and veterinary medicine. Interestingly, these pathologies appear with a common clinical and pathological profile in the human and canine species; as a consequence, dogs may be a spontaneous model for clinical investigations in humans. The aim of this work was to characterize canine adipose-derived MSCs (cADSCs) and compare them to their human counterpart (hADSCs) in order to support the application of the canine model in cell-based therapy of liver diseases. Both cADSCs and hADSCs were successfully isolated from adipose tissue samples. The two cell populations shared a common fibroblast-like morphology, expression of stemness surface markers, and proliferation rate. When examining multilineage differentiation abilities, cADSCs showed lower adipogenic potential and higher osteogenic differentiation than human cells. Both cell populations retained high viability when kept in PBS at controlled temperature and up to 72 h, indicating the possibility of short-term storage and transportation. In addition, we evaluated the efficacy of autologous ADSCs transplantation in dogs with liver diseases. All animals exhibited significantly improved liver function, as evidenced by lower liver biomarkers levels measured after cells transplantation and evaluation of cytological specimens. These beneficial effects seem to be related to the immunomodulatory properties of stem cells. We therefore believe that such an approach could be a starting point for translating the results to the human clinical practice in future.
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- 2018
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27. Covalent organic functionalization of graphene nanosheets and reduced graphene oxide via 1,3-dipolar cycloaddition of azomethine ylide
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Andrea Griesi, Stefan Heun, Silvia Rubini, Aldo Moscardini, Valentina Tozzini, Filippo Fabbri, Mauro Gemmi, Stefano Veronesi, Luca Basta, and Luca Bellucci
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Materials science ,Photoemission spectroscopy ,ENERGY-CONVERSION ,PHASE ,BAND-GAP ,Oxide ,FOS: Physical sciences ,Azomethine ylide ,Bioengineering ,Applied Physics (physics.app-ph) ,Photochemistry ,CARBON NANOTUBES ,law.invention ,chemistry.chemical_compound ,RAMAN-SPECTROSCOPY ,CHEMISTRY ,law ,General Materials Science ,SUPERCAPACITOR ,Condensed Matter - Materials Science ,Graphene ,ATOMIC CHARGES ,General Engineering ,Materials Science (cond-mat.mtrl-sci) ,Physics - Applied Physics ,General Chemistry ,Atomic and Molecular Physics, and Optics ,Cycloaddition ,REDUCTION ,chemistry ,Covalent bond ,1,3-Dipolar cycloaddition ,Surface modification ,HIGH-YIELD PRODUCTION - Abstract
Organic functionalization of graphene is successfully performed via 1,3-dipolar cycloaddition of azomethine ylide in the liquid phase. The comparison between 1-methyl-2-pyrrolidinone and N,N-dimethylformamide as dispersant solvents, and between sonication and homogenization as dispersion techniques, proves N,N-dimethylformamide and homogenization as the most effective choice. The functionalization of graphene nanosheets and reduced graphene oxide is confirmed using different techniques. Among them, energy-dispersive X-ray spectroscopy allows to map the pyrrolidine ring of the azomethine ylide on the surface of functionalized graphene, while micro-Raman spectroscopy detects new features arising from the functionalization, which are described in agreement with the power spectrum obtained from ab initio molecular dynamics simulation. Moreover, X-ray photoemission spectroscopy of functionalized graphene allows the quantitative elemental analysis and the estimation of the surface coverage, showing a higher degree of functionalization for reduced graphene oxide. This more reactive behavior originates from the localization of partial charges on its surface due to the presence of oxygen defects, as shown by the simulation of the electrostatic features. Functionalization of graphene using 1,3-dipolar cycloaddition is shown to be a significant step towards the controlled synthesis of graphene-based complex structures and devices at the nanoscale., 15 pages, 8 figures, for associated Supporting Information see http://shorturl.at/dCQ07
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- 2021
28. Learning Chemistry in English: The Relationship between Language Skills and Learning Outcomes
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Leny Heliawati, Rudi Firmayanto, and Bibin Rubini
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Medium of instruction ,language skills ,Qualitative descriptive ,English language ,chemistry ,lcsh:Education (General) ,Test (assessment) ,learning outcomes ,ComputingMilieux_COMPUTERSANDEDUCATION ,Mathematics education ,Chemistry (relationship) ,lcsh:L ,lcsh:L7-991 ,english ,lcsh:Education - Abstract
The study aims to analyze the relationship between English language skills and the students' learning outcomes in chemistry learning that uses English as the medium of instruction (EMI). This qualitative descriptive study was conducted on 40 high school students. Data is collected and analyzed in the form of the test result of the language skills and learning outcomes. The results for students' language skills: 75 % of students are at level A2 (primary user), 15 % are at level B1 (intermediate), 5 % are at level B2 (upper-intermediate), and 5 % are at level C1 (advance/proficient user). The students' chemistry learning results are averagely low, i.e., 70 % of students gained a score under 75 as the minimum criteria of standard learning, only 30 % of students reached the score above the KKM (Criteria of Minimum Competency). The conclusion of this research is that there is a relationship between language skills and chemistry learning outcomes. Learning chemistry in English has not given good results for students' learning outcomes. Therefore, the demands of learning in English need to be supported by good language skills to understand the learning content.
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- 2020
29. Analysis of nicotinamide N-methyltransferase in oral malignant melanoma and potential prognostic significance
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Eleonora Salvolini, Davide Sartini, Giulia Ganzetti, Giuseppe Colella, Corrado Rubini, Annamaria Offidani, Marco Mascitti, Andrea Santarelli, Monica Emanuelli, Mascitti, M., Santarelli, A., Sartini, D., Rubini, C., Colella, G., Salvolini, E., Ganzetti, G., Offidani, A., and Emanuelli, M.
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Male ,0301 basic medicine ,Cancer Research ,Nicotinamide N-methyltransferase ,Dermatology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,nicotinamide N-methyltransferase ,medicine ,Humans ,Melanoma ,Survival rate ,Aged ,Aged, 80 and over ,oral malignant melanoma ,Univariate analysis ,Nicotinamide ,business.industry ,Middle Aged ,Prognosis ,medicine.disease ,Survival Rate ,030104 developmental biology ,Oncology ,chemistry ,030220 oncology & carcinogenesis ,immunohistochemistry ,Cutaneous melanoma ,Cancer research ,Immunohistochemistry ,Female ,Mouth Neoplasms ,business - Abstract
Oral malignant melanoma (OMM) is an aggressive tumour, and shows deep tissue invasion at initial presentation. The prognosis is worse than that for cutaneous melanoma (CM), and the overall 5-year survival rate is 10-25%. A study of the molecular mechanisms involved in the development of OMM is necessary to identify new prognostic markers. In this study, we evaluated the possible role of nicotinamide N-methyltransferase (NNMT) in OMM. We carried out immunohistochemical analyses to evaluate the expression of NNMT in 15 OMM and 15 CM, measuring the percentage of positive cells and the value of NNMT expression intensity. Furthermore, we explored the relationship between NNMT levels and the prognostic parameters of patients with OMM. NNMT was significantly more expressed in CM compared with OMM, whereas higher staining intensity for NNMT was observed in OMM cases (P
- Published
- 2019
30. Addicting Escherichia coli to New-to-Nature Reactions
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Rudy Rubini, Clemens Mayer, and Biomolecular Chemistry & Catalysis
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0301 basic medicine ,Auxotrophy ,Metal Nanoparticles ,Computational biology ,Bacterial growth ,medicine.disease_cause ,Proof of Concept Study ,01 natural sciences ,Biochemistry ,Xenobiotics ,03 medical and health sciences ,Escherichia coli ,medicine ,Letters ,chemistry.chemical_classification ,Organisms, Genetically Modified ,010405 organic chemistry ,General Medicine ,Solid medium ,Culture Media ,0104 chemical sciences ,Amino acid ,Genetically modified organism ,030104 developmental biology ,chemistry ,Homogeneous ,Horizontal gene transfer ,Molecular Medicine ,Synthetic Biology ,Palladium - Abstract
Biocontainment is an essential feature when deploying genetically modified organisms (GMOs) in open system applications, as variants escaping their intended operating environments could negatively impact ecosystems and human health. To avoid breaches resulting from metabolic cross-feeding, horizontal gene transfer, and/or genetic mutations, synthetic auxotrophs have been engineered to become dependent on exogenously supplied xenobiotics, such as noncanonical amino acids (ncAAs). The incorporation of these abiological building blocks into essential proteins constitutes a first step toward constructing xenobiological barriers between GMOs and their environments. To transition synthetic auxotrophs further away from familiar biology, we demonstrate how bacterial growth can be confined by transition-metal complexes that catalyze the formation of an essential ncAA through new-to-nature reactions. Specifically, using a homogeneous ruthenium complex enabled us to localize bacterial growth on solid media, while heterogeneous palladium nanoparticles could be recycled and deployed up to five consecutive times to ensure the survival of synthetic auxotrophs in liquid cultures.
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- 2020
31. Aflatoxins in organs and biological samples from children affected by kwashiorkor, marasmus and marasmic-kwashiorkor: A scoping review
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Juan F. Merino-Torres, José Miguel Soriano, Dolores Silvestre, María Morales-Suárez-Varela, and Ana Rubini
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Male ,Ochratoxin A ,Aflatoxin ,Low protein ,Physiology ,Biology ,Toxicology ,Fumonisins ,Protein-Energy Malnutrition ,chemistry.chemical_compound ,Aflatoxins ,medicine ,Humans ,Weaning ,Child ,Mycotoxin ,Fumonisin B1 ,Kwashiorkor ,Infant ,food and beverages ,Mycotoxins ,medicine.disease ,Ochratoxins ,chemistry ,Child, Preschool ,Marasmus ,Female - Abstract
Originally, the kwashiorkor is a pathology justified by the low consumption of proteins and high carbohydrates in weaned children. However, today, it can appear due to multifactorial causes, one of the hypotheses being the presence of aflatoxins in foods consumed by the child population and detected in biological fluids. The objective of this work is to scoping review the presence of aflatoxins in kwashiorkor, marasmus and marasmic-kwashiorkor from organs and biological samples in children. Results reflected that the presence of aflatoxins in kwashiorkor is greater compared to marasmic-kwashiorkor and marasmus in the organs and biological samples analyzed. The relationship of this mycotoxin with the pathology shows that it can affect both genders, even up to 12 years, in addition they are detected in eight biological samples and organs, except in the spleen, and in ten African countries and in the Philippines. The appearance of this pathology has been associated in children when after weaning they consume foods with low protein content and rich in carbohydrates, but coincidentally coincides with foods where the growth of aflatoxigenic fungi is more prevalent, and even the presence of other fungi that can generate other mycotoxins, such as ochratoxin A and fumonisin B1.
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- 2020
32. Gallic Acid an Agricultural Byproduct Modulates the Biofilm Matrix Exopolysaccharides of the Phytopathogen Ralstonia solanacearum
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Simran Sinsinwar, Jothipandiyan Sowndarya, Vellingiri Vadivel, M. Senthilkumar, Paramasivam Nithyanand, and Durairajan Rubini
- Subjects
Virulence ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Minimum inhibitory concentration ,Solanum lycopersicum ,Gallic Acid ,Gallic acid ,Food science ,Plant Diseases ,030304 developmental biology ,Wilt disease ,0303 health sciences ,Ralstonia solanacearum ,biology ,Extracellular Polymeric Substance Matrix ,030306 microbiology ,Biofilm ,food and beverages ,Biofilm matrix ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,chemistry ,Bacteria - Abstract
Ralstonia solanacearum is a soil-borne plant pathogen which causes wilt disease in economically important crops of the Solanaceae family in tropical and temperate regions. As biofilm formation is the major virulence factor in R. solanacearum, research inputs are necessary to identify natural biofilm inhibitors to mitigate virulence of this bacterium. Hence in the present work, the anti-biofilm potential of phytochemical compound gallic acid (GA) isolated from an agricultural byproduct (cashewnut shell) was investigated. Initially the Minimum inhibitory concentration (MIC) of crude extracts of cashewnut shell and coconut shell against R. solanacearum were investigated. The MIC of both the extracts were 400 µg/ml and their sub-MIC (200 µg/ml) inhibited biofilms in the range of 62-70% and 49-57%, respectively. As the cashewnut shell extract have higher biofilm inhibitory effect compared to coconut shell extract, we proceeded our further study by isolating the major compound GA from cashewnut shell by acid hydrolysate method. The sub-MIC of crude cashewnut shell extract inhibited 85% of young biofilms. The MIC of GA were observed at 3 mg/ml and sub-MIC (1.5 mg/ml) was found to eradicate 85% of mature biofilms which was confirmed by standard crystal violet assay and the biofilm reduction was further visualized under light microscopy and scanning electron microscopic images. Toxicity of GA was evaluated against R. solanacearum through XTT cell viability assay and found no antibacterial effect at sub-MIC. Additionally, it is confirmed with growth curve and time kill assays. Swimming and twitching motility were considered as an important virulence factors to invade plants and to block the xylem vessels. Therefore, sub-MIC of GA was found to inhibit both swimming and twitching motility of about 93% and 63% respectively. Anti-biofilm efficacy of GA was also worked well with tomato plant model where remarkable biofilm inhibition was found on treatment with GA before and after 24 h of infection with R. solanacearum. Hence GA will be an alternative, cheap source which is eco-friendly as well as novel source for the treatment of R. solanacearum biofilms and to prevent wilt disease in important crops.
- Published
- 2020
33. From the Amelioration of a NADP + ‐dependent Formate Dehydrogenase to the Discovery of a New Enzyme: Round Trip from Theory to Practice
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Chiara Lonigro, Marina Simona Robescu, Elisabetta Bergantino, Elisa Beneventi, Laura Cendron, Rudy Rubini, Francesco Filippini, Michele Tavanti, Francesca Zito, Laboratoire de biologie physico-chimique des protéines membranaires (LBPC-PM (UMR_7099)), Institut de biologie physico-chimique (IBPC (FR_550)), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Molecular Biology and Bioinformatics Unit, Department of Biology, Universita degli Studi di Padova, Department of Biology, University of Padova, and Labex Dynamo
- Subjects
0106 biological sciences ,chemistry.chemical_classification ,0303 health sciences ,Chemistry ,[SDV]Life Sciences [q-bio] ,Organic Chemistry ,Theory to practice ,Formate dehydrogenase ,01 natural sciences ,Catalysis ,Inorganic Chemistry ,03 medical and health sciences ,Enzyme ,Biochemistry ,010608 biotechnology ,Physical and Theoretical Chemistry ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology - Abstract
International audience
- Published
- 2020
34. Opportunities for interfacing organometallic catalysts with cellular metabolism
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Rubini, Rudy, Mayer, Clemens, Daumann, Lena J., and Biomolecular Chemistry & Catalysis
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Cellular metabolism ,Chemistry ,Interfacing ,Nanotechnology ,Catalysis - Abstract
A concerted effort of synthetic chemistry and synthetic biology promises to expand biological function without the need for extensive genetic manipulation. In such scenarios, man-made catalysts perform new-to-nature transformations on molecules, which are either provided or further diversified by biocatalysts in designer microbes. Here, we highlight the potential of interfacing man-made catalysts with cellular metabolism by discussing the importance of non-enzymatic, metal-catalyzed transformations in nature, means to identify biocompatible transition-metal complexes and their successful integration with cellular metabolism. Lastly, we provide a critical analysis of future prospects and remaining challenges for the applications of biocompatible catalysts in synthetic chemistry, biotechnology, and biomedicine.
- Published
- 2022
35. Curcumin-Functionalized Gelatin Films: Antioxidant Materials with Modulated Physico-Chemical Properties
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Katia Rubini, Silvia Parmeggiani, Elisa Boanini, Adriana Bigi, Rubini K., Boanini E., Parmeggiani S., and Bigi A.
- Subjects
food.ingredient ,Antioxidant ,antioxidant ,Polymers and Plastics ,Biocompatibility ,medicine.medical_treatment ,Organic chemistry ,02 engineering and technology ,radical scavenging activity ,Gelatin ,release ,Article ,DSC ,gelatin ,chemistry.chemical_compound ,swelling ,QD241-441 ,0404 agricultural biotechnology ,Differential scanning calorimetry ,food ,medicine ,curcumin ,water solubility ,Aqueous solution ,04 agricultural and veterinary sciences ,General Chemistry ,021001 nanoscience & nanotechnology ,040401 food science ,chemistry ,Chemical engineering ,Curcumin ,Glutaraldehyde ,Swelling ,medicine.symptom ,0210 nano-technology - Abstract
In this paper we used curcumin as a functionalizing agent of gelatin films with the aim to get antioxidant materials with modulated physico-chemical properties. To this aim, we prepared gelatin films at different contents of curcumin up to about 1.2 wt%. The as-prepared films, as well as glutaraldehyde crosslinked films, were submitted to several tests: swelling, water solubility, differential scanning calorimetry, X-ray diffraction, mechanical tests and curcumin release. The radical scavenging activity of the as-prepared films is similar to that of free curcumin, indicating remarkable antioxidant properties. All the other tested properties vary as a function of curcumin content and/or the presence of the crosslinking agent. In particular, the films exhibit sustained curcumin release in different solvents. Thanks to its biocompatibility, biodegradability and lack of antigenicity, gelatin uses span from food processing to packaging and biomaterials. It follows that the modulated properties exhibited by the functionalized materials developed in this work can be usefully employed in different application fields.
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- 2021
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36. β-Hexachlorocyclohexane Drives Carcinogenesis in the Human Normal Bronchial Epithelium Cell Line BEAS-2B
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Fabio Altieri, Silvia Chichiarelli, Donatella Romaniello, Margherita Eufemi, Giuliano Paglia, Elisabetta Rubini, Marco Minacori, Rubini E, Minacori M, Paglia G, Altieri F, Chichiarelli S, Romaniello D, and Eufemi M.
- Subjects
Gene Expression ,Apoptosis ,010501 environmental sciences ,medicine.disease_cause ,Cell morphology ,01 natural sciences ,Malignant transformation ,0302 clinical medicine ,Biology (General) ,Spectroscopy ,Cells, Cultured ,Chemistry ,organochlorine pollutants (OCPs) ,Cell Cycle ,β hexachlorocyclohexane (β-HCH), carcinogenesis ,General Medicine ,Computer Science Applications ,β hexachlorocyclohexane (β-HCH) ,carcinogenesis ,signal transduction ,Cell Transformation, Neoplastic ,030220 oncology & carcinogenesis ,Signal transduction ,organochlorine pollutants (OCPs), signal transduction ,DNA damage ,QH301-705.5 ,Respiratory Mucosa ,Catalysis ,Article ,Cell Line ,Inorganic Chemistry ,03 medical and health sciences ,medicine ,Biomarkers, Tumor ,Humans ,Physical and Theoretical Chemistry ,Molecular Biology ,QD1-999 ,Carcinogen ,0105 earth and related environmental sciences ,Cell Proliferation ,Organic Chemistry ,Epithelial Cells ,Cell culture ,Cancer research ,Carcinogens ,Carcinogenesis ,Reactive Oxygen Species ,hexachlorocyclohexane ,Biomarkers - Abstract
Organochlorine pesticides constitute the majority of the total environmental pollutants, and a wide range of compounds have been found to be carcinogenic to humans. Among all, growing interest has been focused on β-hexachlorocyclohexane (β-HCH), virtually the most hazardous and, at the same time, the most poorly investigated member of the hexachlorocyclohexane family. Considering the multifaceted biochemical activities of β-HCH, already established in our previous studies, the aim of this work is to assess whether β-HCH could also trigger cellular malignant transformation toward cancer development. For this purpose, experiments were performed on the human normal bronchial epithelium cell line BEAS-2B exposed to 10 µM β-HCH. The obtained results strongly support the carcinogenic potential of β-HCH, which is achieved through both non-genotoxic (activation of oncogenic signaling pathways and proliferative activity) and indirect genotoxic (ROS production and DNA damage) mechanisms that significantly affect cellular macroscopic characteristics and functions such as cell morphology, cell cycle profile, and apoptosis. Taking all these elements into account, the presented study provides important elements to further characterize β-HCH, which appears to be a full-fledged carcinogenic agent.
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- 2021
37. A Screening Platform to Identify and Tailor Biocompatible Small-Molecule Catalysts
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Rubini, Rudy, Ivanov, Ilya, Mayer, Clemens, and Biomolecular Chemistry & Catalysis
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DIRECTED EVOLUTION ,BIOORTHOGONAL CATALYSIS ,Nanotechnology ,Central dogma of molecular biology ,non-canonical amino acids ,010402 general chemistry ,01 natural sciences ,Catalysis ,ACTIVATION ,CHEMISTRY ,catalyst screening ,TRANSFER HYDROGENATION ,Cellular metabolism ,COMPLEX ,010405 organic chemistry ,Chemistry ,uncaging ,CLEAVAGE ,Communication ,Organic Chemistry ,General Chemistry ,Biocompatible material ,Small molecule ,Communications ,0104 chemical sciences ,biocompatible catalysis ,Interfacing ,metabolism ,SYSTEM - Abstract
Interfacing biocompatible, small‐molecule catalysis with cellular metabolism promises a straightforward introduction of new function into organisms without the need for genetic manipulation. However, identifying and optimizing synthetic catalysts that perform new‐to‐nature transformations under conditions that support life is a cumbersome task. To enable the rapid discovery and fine‐tuning of biocompatible catalysts, we describe a 96‐well screening platform that couples the activity of synthetic catalysts to yield non‐canonical amino acids from appropriate precursors with the subsequent incorporation of these nonstandard building blocks into GFP (quantifiable readout). Critically, this strategy does not only provide a common readout (fluorescence) for different reaction/catalyst combinations, but also informs on the organism's fitness, as stop codon suppression relies on all steps of the central dogma of molecular biology. To showcase our approach, we have applied it to the evaluation and optimization of transition‐metal‐catalyzed deprotection reactions., A multi‐well screen that rapidly reports the catalytic activity of transition‐metal catalysts in presence of live cells is reported. The activity of a catalyst to yield a non‐canonical amino acid (ncAA) from an appropriate precursor is coupled to the incorporation of the nonstandard building block into GFP (quantifiable readout; see scheme).
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- 2019
38. STAT3, a Hub Protein of Cellular Signaling Pathways, Is Triggered by β-Hexaclorocyclohexane
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Elisabetta Rubini, Fabio Altieri, Silvia Chichiarelli, Flavia Giamogante, Stefania Carissimi, Giuliano Paglia, Alberto Macone, and Margherita Eufemi
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STAT3 ,β-hexaclorocyclohexane (β-HCH) ,signal transduction ,energy metabolism ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Background: Organochlorine pesticides (OCPs) are widely distributed in the environment and their toxicity is mostly associated with the molecular mechanisms of endocrine disruption. Among OCPs, particular attention was focused on the effects of β-hexaclorocyclohexane (β-HCH), a widely common pollutant. A detailed epidemiological study carried out on exposed population in the “Valle del Sacco” found correlations between the incidence of a wide range of diseases and the occurrence of β-HCH contamination. Taking into account the pleiotropic role of the protein signal transducer and activator of transcription 3 (STAT3), its function as a hub protein in cellular signaling pathways triggered by β-HCH was investigated in different cell lines corresponding to tissues that are especially vulnerable to damage by environmental pollutants. Materials and Methods: Human prostate cancer (LNCaP), human breast cancer (MCF-7 and MDA-MB 468), and human hepatoma (HepG2) cell lines were treated with 10 μM β-HCH in the presence or absence of specific inhibitors for different receptors. All samples were subjected to analysis by immunoblotting and RT-qPCR. Results and Conclusions: The preliminary results allow us to hypothesize the involvement of STAT3, through both its canonical and non-canonical pathways, in response to β-HCH. Moreover, we ascertained the role of STAT3 as a master regulator of energy metabolism via the altered expression and localization of HIF-1α and PKM2, respectively, resulting in a Warburg-like effect.
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- 2018
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39. (9R)-9-Hydroxystearate-Functionalized Anticancer Ceramics Promote Loading of Silver Nanoparticles
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Elisa Boanini, Maria Cristina Cassani, Katia Rubini, Carla Boga, and Adriana Bigi
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hydroxyapatite ,silver ,nanoparticles ,X-ray diffraction ,transmission electron microscopy ,ceramic ,biomaterial ,Chemistry ,QD1-999 - Abstract
Functionalization of calcium phosphates for biomedical applications has been proposed as a strategy to enrich the good osteoinductive properties of these materials with specific therapeutic characteristics. Herein, we prepared and characterized hydroxyapatite nanocrystals functionalized with an anticancer agent, (9R)-9-hydroxystearate (HSA), and loaded with an antimicrobial agent, namely silver nanoparticles (AgNPs). Nanocrystals at two different contents of HSA, about 4 and 9 wt %, were prepared via direct synthesis in aqueous solution. Loading with the antibacterial agent was achieved through interaction with different volumes of AgNPs suspensions. The amount of loaded nanoparticles increases with the volume of the AgNPs suspension and with the hydroxystearate content of the nanocrystals, up to about 3.3 wt %. The structural, morphological, and hydrophobic properties of the composite materials depend on hydroxystearate content, whereas they are not affected by AgNPs loading. At variance, the values of zeta potential slightly increase with the content of AgNPs, which exhibit a sustained release in cell culture medium.
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- 2018
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40. Strontium substituted hydroxyapatite with β-lactam integrin agonists to enhance mesenchymal cells adhesion and to promote bone regeneration
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Adriana Bigi, Giulia Martelli, Elisa Boanini, Paola Torricelli, Katia Rubini, Milena Fini, Stefania Pagani, Martina Cirillo, Daria Giacomini, Mara Di Filippo, Cirillo M., Martelli G., Boanini E., Rubini K., Di Filippo M., Torricelli P., Pagani S., Fini M., Bigi A., and Giacomini D.
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Integrins ,Bone Regeneration ,Integrin ,02 engineering and technology ,beta-Lactams ,01 natural sciences ,Bone resorption ,Delivery vehicle ,Colloid and Surface Chemistry ,Osteoclast ,0103 physical sciences ,medicine ,Humans ,Physical and Theoretical Chemistry ,Cell adhesion ,Bone regeneration ,010304 chemical physics ,biology ,Chemistry ,Mesenchymal stem cell ,Biomedical application ,β-lactams ,Cell Differentiation ,Surfaces and Interfaces ,General Medicine ,Adhesion ,021001 nanoscience & nanotechnology ,Cell biology ,medicine.anatomical_structure ,Durapatite ,Osteoinduction ,Strontium ,biology.protein ,Apatite nanoparticle ,Hydroxyapatites ,0210 nano-technology ,Intracellular ,Biotechnology - Abstract
Multi-functionalization of calcium phosphates to get delivery systems of therapeutic agents is gaining increasing relevance for the development of functional biomaterials aimed to solve problems related to disorders of the muscolo-skeletal system. In this regard, we functionalized Strontium substituted hydroxyapatite (SrHA) with some β-lactam integrin agonists to develop materials with enhanced properties in promoting cell adhesion and activation of intracellular signaling as well as in counteracting abnormal bone resorption. For this purpose, we selected two monocyclic β-lactams on the basis of their activities towards specific integrins on promoting cell adhesion and signalling. The amount of β-lactams loaded on SrHA could be modulated on changing the polarity of the loading solution, from 3.5-24 wt% for compound 1 and from 3.2-8.4 wt% for compound 2. Studies on the release of the β-lactams from the functionalized SrHA in aqueous medium showed an initial burst followed by a steady-release that ensures a small but constant amount of the compounds over time. The new composites were fully characterized. Co-culture of human primary mesenchymal stem cells (hMSC) and human primary osteoclast (OC) demonstrated that the presence of β-lactams on SrHA favors hMSC adhesion and viability, as well as differentiation towards osteoblastic lineage. Moreover, the β-lactams were found to enhance the inhibitory role of Strontium on osteoclast viability and differentiation.
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- 2021
41. 5-Methyltetrahydrofolate and Vitamin B12 Supplementation Is Associated with Clinical Pregnancy and Live Birth in Women Undergoing Assisted Reproductive Technology
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Maria Elisabetta Coccia, Cinzia Fatini, Rossella Fucci, Sara Rubini, and Michela Cirillo
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medicine.medical_specialty ,Homocysteine ,Reproductive Techniques, Assisted ,Health, Toxicology and Mutagenesis ,medicine.medical_treatment ,folate ,Article ,MTHFR ,assisted reproduction ,dietary supplement ,pregnancy ,vitamin B complex ,chemistry.chemical_compound ,Folic Acid ,Medicine ,Humans ,Vitamin B12 ,Tetrahydrofolates ,Retrospective Studies ,Pregnancy ,Assisted reproductive technology ,biology ,business.industry ,Obstetrics ,Public Health, Environmental and Occupational Health ,Micronutrient ,medicine.disease ,Vitamin B 12 ,chemistry ,Methylenetetrahydrofolate reductase ,Dietary Supplements ,biology.protein ,Female ,business ,Live birth ,Multivitamin ,Infertility, Female ,Live Birth - Abstract
The homocysteine pathway in the preconception period should be evaluated to highlight micronutrient deficiencies and warrants optimal multivitamin supplementation, before Assisted Reproduction, as preconception care. We conducted a retrospective study aimed at investigating the role of vitamin B complex (5-methyltetrahydrofolate, vitamin B12, vitamin B6) supplement use compared with the role of only folic acid supplement use, in relation to clinical pregnancy and live birth in infertile women undergoing homologous ART. We investigated 269 Caucasian women referred to the Centre for Assisted Reproductive Technology for homologous ART. In these women, 111 (Group A) were daily supplemented with vitamin B complex and 158 (Group B) with only folic acid. In group A the mean number of Metaphase II oocytes and the 2PN Fertilization Rate were higher in comparison to group A (p = 0.04; p = 0.05, respectively). A higher percentage of women in group A had a clinical pregnancy and live birth in comparison to group B (p = 0.01; p = 0.02, respectively). Vitamin B complex supplementation remained independently associated, after multivariable adjustment, with clinical pregnancy (OR 2.03, p = 0.008) and live birth (OR 1.83, p = 0.03). Women supplemented with 5-MTHF and vitamin B12, have a higher chance of clinical pregnancy and live birth in comparison to those supplemented with only folic acid.
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- 2021
42. A Comparative Analysis of Punicalagin Interaction with PDIA1 and PDIA3 by Biochemical and Computational Approaches
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Laura Cervoni, Manuela Sabatino, Lorenzo Antonini, Marco Minacori, Rino Ragno, Fabio Altieri, Elisabetta Rubini, and Giuliano Paglia
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Thermal denaturation ,redox activity ,QH301-705.5 ,Rational design ,Medicine (miscellaneous) ,PDIA3 ,molecular docking ,protein disulfide isomerase ,General Biochemistry, Genetics and Molecular Biology ,Article ,molecular dynamics ,inhibitor ,PDIA3/ERp57 ,punicalagin ,chemistry.chemical_compound ,Biochemistry ,chemistry ,Protein activity ,Reductase activity ,Binding site ,Biology (General) ,Protein disulfide-isomerase ,Punicalagin - Abstract
In a previous work, it was shown that punicalagin, an active ingredient of pomegranate, is able to bind to PDIA3 and inhibit its disulfide reductase activity. Here we provide evidence that punicalagin can also bind to PDIA1, the main expressed form of protein disulfide isomerase (PDI). In this comparative study, the affinity and the effect of punicalagin binding on each protein were evaluated, and a computational approach was used to identify putative binding sites. Punicalagin binds to either PDIA1 or PDIA3 with a similar affinity, but the inhibition efficacy on protein reductase activity is higher for PDIA3. Additionally, punicalagin differently affects the thermal denaturation profile of both proteins. Molecular docking and molecular dynamics simulations led to propose a punicalagin binding mode on PDIA1 and PDIA3, identifying the binding sites at the redox domains a’ in two different pockets, suggesting different effects of punicalagin on proteins’ structure. This study provides insights to develop punicalagin-based ligands, to set up a rational design for PDIA3 selective inhibitors, and to dissect the molecular determinant to modulate the protein activity.
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- 2021
43. Maternal One-Carbon Metabolism during the Periconceptional Period and Human Foetal Brain Growth: A Systematic Review
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Melinda Zana, Sam Schoenmakers, Inge M. M. Baijens, Melek Rousian, A. Dinnyes, Régine P.M. Steegers-Theunissen, Eleonora Rubini, Alex Horánszky, and Kevin D. Sinclair
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medicine.medical_specialty ,Homocysteine ,Offspring ,brain ,Embryonic Development ,Review ,QH426-470 ,folate ,Fetal Development ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Folic Acid ,Pregnancy ,Internal medicine ,medicine ,Genetics ,Choline ,Humans ,030212 general & internal medicine ,Vitamin B12 ,Genetics (clinical) ,periconception ,030304 developmental biology ,2. Zero hunger ,0303 health sciences ,Fetus ,foetal programming ,business.industry ,Embryogenesis ,embryo development ,head ,medicine.disease ,one-carbon metabolism ,Carbon ,3. Good health ,B vitamins ,fetus ,Vitamin B 12 ,Endocrinology ,chemistry ,Female ,business - Abstract
The maternal environment during the periconceptional period influences foetal growth and development, in part, via epigenetic mechanisms moderated by one-carbon metabolic pathways. During embryonic development, one-carbon metabolism is involved in brain development and neural programming. Derangements in one-carbon metabolism increase (i) the short-term risk of embryonic neural tube-related defects and (ii) long-term childhood behaviour, cognition, and autism spectrum disorders. Here we investigate the association between maternal one-carbon metabolism and foetal and neonatal brain growth and development. Database searching resulted in 26 articles eligible for inclusion. Maternal vitamin B6, vitamin B12, homocysteine, and choline were not associated with foetal and/or neonatal head growth. First-trimester maternal plasma folate within the normal range (>17 nmol/L) associated with increased foetal head size and head growth, and high erythrocyte folate (1538–1813 nmol/L) with increased cerebellar growth, whereas folate deficiency (
- Published
- 2021
44. Ga2Se3Nanowires via Au-Assisted Heterovalent Exchange Reactionon GaAs
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Valentina Mussi, Igor Shtrom, Katja Ferfolja, Federico Berto, Mattia Fanetti, Faustino Martelli, Sandra Gardonio, Silvia Rubini, A. Franciosi, Niloofar Haghighian, Vladimir G. Dubrovskii, Berto, F., Haghighian, N., Ferfolja, K., Gardonio, S., Fanetti, M., Martelli, F., Mussi, V., Dubrovskii, V. G., Shtrom, I., Franciosi, A., and Rubini, and S.
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Materials science ,Nanowires ,business.industry ,Gallium selenide ,Nanowire ,Semiconductor ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Gallium arsenide ,chemistry.chemical_compound ,General Energy ,Semiconductors ,chemistry ,Fluxes ,Optoelectronics ,Gold ,Physical and Theoretical Chemistry ,Epitaxy ,business ,Deposition ,Deposition (chemistry) ,Molecular beam epitaxy - Abstract
Out-of-plane Ga2Se3 nanowires are grown by molecular beam epitaxy via Au-assisted heterovalent exchange reaction on GaAs substrates in the absence of Ga deposition. It is shown that at a suitable temperature around 560 °C the Au decorated GaAs substrate releases Ga atoms, which react with the incoming Se and feed the nanowire growth. The nanowire composition, crystal structure, and morphology are characterized by Raman spectroscopy and electron microscopy. The growth mechanism is investigated by X-ray photoelectron spectroscopy. We explore the growth parameter window and find an interesting effect of shortening of the nanowires after a certain maximum length. The nanowire growth is described within a diffusion transport model, which explains the nonmonotonic behavior of the nanowire length versus the growth parameters. Nanowire shortening is explained by the blocking of Ga supply from the GaAs substrate by thick, in-plane worm-like Ga2Se3 structures, which grow concomitantly with the nanowires, followed by backward diffusion of Ga atoms from the nanowires down to the substrate surface.
- Published
- 2020
45. Type 2 diabetes treatment and progression of chronic kidney disease in Italian family practice
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Ermini G., Tosetti C., Zocchi D., Mandreoli M., Caletti M. T., Marchesini G., Balduzzi A., Bandi G., Bassi B., Borghi P., Brini L., Cammarata A., Casadio R., Cau R., Cecchini L., DelVecchio A., DeVicariis M. I., Ehrlich S., Franco L., Ini A., LaFratta V., Maccaferri M., Masi A., Matra A., MazzettiGaito P., Mazzoni G., Monti D., Mori M., Oggianu M., Palasciano M., Paternico A., Perrone F., Pierallini R., Quadrelli S., Rubini S., Salera M., Serio A., Silletti A., Simoncini E., Simoni L., Speziali P., Velona P., Verri A., Zisa D., Ermini G., Tosetti C., Zocchi D., Mandreoli M., Caletti M.T., Marchesini G., Balduzzi A., Bandi G., Bassi B., Borghi P., Brini L., Cammarata A., Casadio R., Cau R., Cecchini L., DelVecchio A., DeVicariis M.I., Ehrlich S., Franco L., Ini A., LaFratta V., Maccaferri M., Masi A., Matra A., MazzettiGaito P., Mazzoni G., Monti D., Mori M., Oggianu M., Palasciano M., Paternico A., Perrone F., Pierallini R., Quadrelli S., Rubini S., Salera M., Serio A., Silletti A., Simoncini E., Simoni L., Speziali P., Velona P., Verri A., and Zisa D.
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Male ,endocrine system diseases ,Endocrinology, Diabetes and Metabolism ,Type 2 diabetes ,urologic and male genital diseases ,chemistry.chemical_compound ,0302 clinical medicine ,Endocrinology ,Body mass index ,Incidence ,Prognosis ,Repaglinide ,Metformin ,Albumin excretion ,Italy ,030220 oncology & carcinogenesis ,Disease Progression ,Female ,medicine.symptom ,Family Practice ,Human ,Glomerular Filtration Rate ,medicine.drug ,medicine.medical_specialty ,Prognosi ,Renal function ,030209 endocrinology & metabolism ,Follow-Up Studie ,03 medical and health sciences ,Internal medicine ,medicine ,Humans ,Hypoglycemic Agents ,Renal Insufficiency, Chronic ,Glucose-lowering drug ,Aged ,Creatinine ,Hypoglycemic Agent ,business.industry ,nutritional and metabolic diseases ,Type 2 Diabetes Mellitus ,Biomarker ,medicine.disease ,Cardiovascular prevention ,Diabetes Mellitus, Type 2 ,chemistry ,Albuminuria ,business ,Biomarkers ,Follow-Up Studies ,Kidney disease - Abstract
Aims: Progressive chronic kidney disease represents a dreadful complication of type 2 diabetes mellitus (T2DM). We tested the pattern of use and the renal effects of old glucose-lowering drugs in T2DM patients cared for by Italian general practitioners (GPs). Methods: Data of 2606 T2DM patients were extracted from the databases of GPs, who do not have access to the most recent glucose-lowering drugs in Italy. The rate of kidney function decline was calculated by CKD-EPIcr, based on two consecutive creatinine values. Results: Metformin was used in 55% of cases, either alone or with sulfonylureas/repaglinide, across the whole spectrum of CKD (from 66% in stage G1 to only 8% in G4). Sulfonylurea use peaked at 21–22% in stage G2–G3a, whereas repaglinide use significantly increased from 8% in G1 to 22% in G4. The median rate of CKD decline was − 1.64mL/min/1.73m2 per year; it was higher in G1 (− 3.22 per year) and progressively lower with CKD severity. 826 cases (31.7%) were classified as fast progressors (eGFR decline more negative than − 5mL/min/1.73m2 per year). The risk of fast progressing CKD was associated with increasing BMI, albuminuria, and sulfonylurea use, alone (OR, 1.47; 95% confidence interval, 1.16–1.85), or in association with metformin (OR, 1.40; 95% CI 1.04–1.88). No associations were demonstrated for metformin, cardiovascular and lipid lowering drug use. Conclusion: In the setting of Italian family practice, sulfonylurea use is associated with progressive CKD in patients with T2DM. Metformin, at doses progressively reduced according to CKD stages, as recommended by guidelines, is not associated with fast progression.
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- 2018
46. Site-Specifically-Labeled Antibodies for Super-Resolution Microscopy Reveal In Situ Linkage Errors
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Philipp R. Spycher, Susanna M. Früh, Ingmar Schoen, Ralf Jungmann, Sebastian Lickert, Viola Vogel, Ulf Matti, Marina Rubini, Jonas Ries, and Thomas Schlichthaerle
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In situ ,Glycan ,Glycosylation ,biology ,Super-resolution microscopy ,General Engineering ,General Physics and Astronomy ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Primary and secondary antibodies ,Immunoglobulin G ,3. Good health ,0104 chemical sciences ,chemistry.chemical_compound ,Immunolabeling ,chemistry ,Microscopy ,Biophysics ,biology.protein ,General Materials Science ,0210 nano-technology ,Antibodies ,Transglutaminase ,Click chemistry ,Fluorescent probes ,Monte Carlo simulations - Abstract
The precise spatial localization of proteins in situ by super-resolution microscopy (SRM) demands their targeted labeling. Positioning reporter molecules as close as possible to the target remains a challenge in primary cells or tissues from patients that cannot be easily genetically modified. Indirect immunolabeling introduces relatively large linkage errors, whereas site-specific and stoichiometric labeling of primary antibodies relies on elaborate chemistries. In this study, we developed a simple two-step protocol to site-specifically attach reporters such as fluorophores or DNA handles to several immunoglobulin G (IgG) antibodies from different animal species and benchmarked the performance of these conjugates for 3D STORM (stochastic optical reconstruction microscopy) and DNA-PAINT (point accumulation in nanoscale topography). Glutamine labeling was restricted to two sites per IgG and saturable by exploiting microbial transglutaminase after removal of N-linked glycans. Precision measurements of 3D microtubule labeling shell dimensions in cell lines and human platelets showed that linkage errors from primary and secondary antibodies did not add up. Monte Carlo simulations of a geometric microtubule-IgG model were in quantitative agreement with STORM results. The simulations revealed that the flexible hinge between Fab and Fc segments effectively randomized the direction of the secondary antibody, while the restricted binding orientation of the primary antibody’s Fab fragment accounted for most of the systematic offset between the reporter and α-tubulin. DNA-PAINT surprisingly yielded larger linkage errors than STORM, indicating unphysiological conformations of DNA-labeled IgGs. In summary, our cost-effective protocol for generating well-characterized primary IgG conjugates offers an easy route to precise SRM measurements in arbitrary fixed samples. ISSN:1936-0851 ISSN:1936-086X
- Published
- 2021
47. A New Turbomachine for Clean and Sustainable Hydrocarbon Cracking
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Liping Xu, Dylan Rubini, Harri Johannesdahl, and Budimir Rosic
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chemistry.chemical_classification ,Waste management ,business.industry ,Mechanical Engineering ,Energy Engineering and Power Technology ,Aerospace Engineering ,Coke ,Combustion ,Cracking ,Fuel Technology ,Petrochemical ,Hydrocarbon ,Nuclear Energy and Engineering ,chemistry ,Natural gas ,Sustainability ,Environmental science ,Fracture process ,business - Abstract
Decarbonising highly energy-intensive industrial processes is imperative if nations are to comply with anthropogenic greenhouse gas emissions targets by 2050. This is a significant challenge for high-temperature industrial processes, such as hydrocarbon cracking, and there have been limited developments thus far. The novel concept presented in this study aims to replace the radiant section of a hydrocarbon cracking plant with a novel turbo-reactor. This is one of the first major and potentially successful attempts at decarbonising the petrochemical industry. Rather than using heat from the combustion of natural gas, the novel turbo-reactor can be driven by an electric motor powered by renewable electricity. Switching the fundamental energy transfer mechanism from surface heat exchange to mechanical energy transfer significantly increases the exergy efficiency of the process. Theoretical analysis and numerical simulations show that the ultra-high aerodynamic loading rotor is able to impart substantial mechanical energy into the feedstock without excess temperature difference and temperature magnitude. A complex shockwave system then transforms the kinetic energy into internal energy over an extremely short distance. The version of the turbo-reactor developed and presented in this study uses a single rotor row, in which a multi-stage configuration is achieved regeneratively by guiding the flow through a toroidal-shaped vaneless space. This configuration leads to a reduction in reactor volume by more than two orders of magnitude compared with a conventional furnace. A significantly lower wall surface temperature, supersonic gas velocities and a shorter primary gas path enable a controlled reduction in the residence time for chemical reactions, which optimises the yield. For the same reasons, the conditions for coke deposition on the turbo-reactor surfaces are unfavourable, leading to an increase in plant availability. This study demonstrates that the mechanical work input into the feedstock can be dissipated through an intense turbulent mixing process which maintains an ideal and controlled pressure level for cracking. Numerical calculations show that the turbulence intensity increases by nearly an order of magnitude relative to that in a industrial radiant reaction tube, which can be favourable for accelerating the chemical kinetics.
- Published
- 2021
48. Functional analyses of ancestral thioredoxins provide insights into their evolutionary history
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Robin J. Reber, Silvia Napolitano, Rudi Glockshuber, and Marina Rubini
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inorganic chemicals ,0301 basic medicine ,Cytoplasm ,Thioredoxin-Disulfide Reductase ,Thioredoxin reductase ,Context (language use) ,Reductase ,medicine.disease_cause ,Biochemistry ,Evolution, Molecular ,Structure-Activity Relationship ,03 medical and health sciences ,Cytosol ,Thioredoxins ,Molecular evolution ,Escherichia coli ,medicine ,oxidative stress ,Disulfides ,molecular evolution ,thioredoxin ,thioredoxin reductase ,electron transfer ,methionine sulfoxide reductase ,phylogenetic reconstruction ,redox biology ,redox homeostasis ,Molecular Biology ,History, Ancient ,chemistry.chemical_classification ,030102 biochemistry & molecular biology ,Chemistry ,Cell Biology ,Oxidants ,Kinetics ,030104 developmental biology ,Enzyme ,Methionine sulfoxide reductase ,Thioredoxin ,Oxidation-Reduction ,Molecular Biophysics ,NADP - Abstract
Thioredoxin (Trx) is a conserved, cytosolic reductase in all known organisms. The enzyme receives two electrons from NADPH via thioredoxin reductase (TrxR) and passes them on to multiple cellular reductases via disulfide exchange. Despite the ubiquity of thioredoxins in all taxa, little is known about the functions of resurrected ancestral thioredoxins in the context of a modern mesophilic organism. Here, we report on functional in vitro and in vivo analyses of seven resurrected Precambrian thioredoxins, dating back 1–4 billion years, in the Escherichia coli cytoplasm. Using synthetic gene constructs for recombinant expression of the ancestral enzymes, along with thermodynamic and kinetic assays, we show that all ancestral thioredoxins, as today's thioredoxins, exhibit strongly reducing redox potentials, suggesting that thioredoxins served as catalysts of cellular reduction reactions from the beginning of evolution, even before the oxygen catastrophe. A detailed, quantitative characterization of their interactions with the electron donor TrxR from Escherichia coli and the electron acceptor methionine sulfoxide reductase, also from E. coli, strongly hinted that thioredoxins and thioredoxin reductases co-evolved and that the promiscuity of thioredoxins toward downstream electron acceptors was maintained during evolution. In summary, our findings suggest that thioredoxins evolved high specificity for their sole electron donor TrxR while maintaining promiscuity to their multiple electron acceptors., Journal of Biological Chemistry, 294 (38), ISSN:0021-9258, ISSN:1083-351X
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- 2019
49. Simplified in Vitro and in Vivo Bioaccess to Prenylated Compounds
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Jean-Louis Petit, Alyssa Rubini, Véronique de Berardinis, Elise Courvoisier-Dezord, Julie Couillaud, Katia Duquesne, Juan Rico, Gilles Iacazio, Ekaterina Darii, Tarek Hamrouni, Aline Mariage, Institut des Sciences Moléculaires de Marseille (ISM2), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Génomique métabolique (UMR 8030), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), and ANR-14-CE06-0027,Reset,Mini voie de biosynthèse des terpènes(2014)
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lcsh:Chemistry ,Terpene ,lcsh:QD1-999 ,Prenylation ,Chemistry ,Stereochemistry ,In vivo ,[SDV]Life Sciences [q-bio] ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,General Chemical Engineering ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,General Chemistry ,In vitro - Abstract
All naturally produced terpenes are derived from two universal C5 diphosphate precursors, dimethylallyl diphosphate (DMAPP) and isopentenyl diphosphate (IPP). Various prenyl transferases use DMAPP ...
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- 2019
50. Antibacterial and antibiofilm activities of linalool nanoemulsions against Salmonella Typhimurium
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Anand Prakash, Paramasivam Nithyanand, Vellingiri Vadivel, and Durairajan Rubini
- Subjects
0303 health sciences ,Salmonella ,030309 nutrition & dietetics ,Chemistry ,Biofilm ,04 agricultural and veterinary sciences ,medicine.disease_cause ,040401 food science ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0404 agricultural biotechnology ,Linalool ,Cell integrity ,Plant species ,Ultrasonic assisted ,medicine ,Food science ,Antibacterial activity ,Food Science - Abstract
Linalool is the active constituent of essential oils of several plant species like coriander, rosewood and cinnamon, which is known to have strong antibacterial activity. However, its application in food systems is limited because of low water solubility, high volatility and low stability. The present study was undertaken to overcome such problems by encapsulating the linalool into nanoemulsions using Tween 80 and water using ultrasonic assisted emulsification. The stable nanoemulsions with a mean droplet diameter of 10.9 ± 0.1 nm was obtained at a 1:3 (v/v) ratio of linalool and Tween 80. The antibacterial and antibiofilm activities of the stable nanoemulsions were further investigated. The linalool nanoemulsions showed twofold enhanced antibacterial activity against Salmonella Typhimurium through their increased ability to disrupt cell membrane integrity. Moreover, compared to the pure linalool, the linalool nanoemulsions showed an 11.5% higher antibiofilm activity. Nanoemulsions also effectively reduced the S. Typhimurium biofilm on the surface of cut pineapple. Sensory analysis showed acceptance of fresh cut pineapple with linalool nanoemulsions treatment. Therefore, results of the present study indicated the potential use of linalool nanoemulsions as a natural antibacterial and antibiofilm agent against S. Typhimurium, which could find applications in the food industry.
- Published
- 2019
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