142 results on '"Magnasco, A."'
Search Results
2. Orbital Exponent Optimization in Elementary VB Calculations of the Chemical Bond in the Ground State of Simple Molecular Systems
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Magnasco, Valerio
- Abstract
Orbital exponent optimization in the elementary ab-initio VB calculation of the ground states of H[subscript 2][superscript +], H[subscript 2], He[subscript 2][superscript +], He[subscript 2] gives a fair description of the exchange-overlap component of the interatomic interaction that is important in the bond region. Correct bond lengths and about 85% of the experimental bond energies are obtained, giving a satisfactory first account of 1-electron (H[subscript 2][superscript +]), 2-electron (H[subscript 2]), 3-electron (He[subscript 2][superscript +]) chemical bonds and an adequate description of the corresponding Pauli repulsion in He+He. (Contains 1 figure, 6 tables and 2 notes.)
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- 2008
3. A Model for the Chemical Bond
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Magnasco, Valerio
- Abstract
Bond stereochemistry in polyatomic hydrides is explained in terms of the principle of bond energies maximization, which yields X-H straight bonds and suggests the formation of appropriate sp hybrids on the central atom. An introduction to the electron charge distribution in molecules is given, and atomic, overlap, gross and formal charges are introduced to explain the origin of molecular electric moments.
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- 2004
4. Role of new antibiotics in the treatment of acute bacterial skin and skin-structure infections
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Filippo Del Puente, Matteo Bassetti, Daniele Roberto Giacobbe, and Laura Magnasco
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0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,030106 microbiology ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Telavancin ,Randomized controlled trial ,law ,Internal medicine ,Omadacycline ,medicine ,Humans ,030212 general & internal medicine ,business.industry ,Soft Tissue Infections ,Oritavancin ,Dalbavancin ,Skin Diseases, Bacterial ,Anti-Bacterial Agents ,Infectious Diseases ,chemistry ,Iclaprim ,Tedizolid ,Delafloxacin ,business ,medicine.drug - Abstract
Purpose of review To summarize the available efficacy and safety data of novel agents for treating acute bacterial skin and skin-structure infections (ABSSSI), focusing on those active against methicillin-resistant Staphylococcus aureus (MRSA). Recent findings There are now several agents active against MRSA that are approved for the treatment of ABSSSI, including tedizolid, ceftaroline, dalbavancin, telavancin, oritavancin, delafloxacin, and omadacycline. In addition, iclaprim has completed phase-3 randomized clinical trials (RCTs). Summary Considering the similar efficacy that arose from direct comparisons in phase-3 RCTs, in order to adopt the best approach for treating ABSSSI on patient-tailored basis, the different safety profiles and formulations of the different available agents should be balanced by taking into account the specific features of each treated patient in terms of baseline comorbidities, related risk of toxicity, need for hospitalization, possibility of early discharge, and expected adherence to outpatient oral therapy.
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- 2020
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5. A UHPLC–MS/MS Method for Therapeutic Drug Monitoring of Aciclovir and Ganciclovir in Plasma and Dried Plasma Spots
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Raffaele Simeoli, Sebastiano Barco, Gino Tripodi, Alberto Magnasco, Bianca Maria Goffredo, Giuliana Cangemi, Federica Pigliasco, Maura Faraci, and Alessia Cafaro
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Ganciclovir ,Analyte ,Bioanalysis ,Chromatography ,medicine.diagnostic_test ,QH301-705.5 ,Chemistry ,ganciclovir ,therapeutic drug monitoring ,Cmax ,valganciclovir ,Medicine (miscellaneous) ,Valganciclovir ,aciclovir ,General Biochemistry, Genetics and Molecular Biology ,Article ,Valaciclovir ,Cmin ,Therapeutic drug monitoring ,valaciclovir ,medicine ,dried plasma spot ,Biology (General) ,LC-MS/MS ,medicine.drug - Abstract
The role of therapeutic drug monitoring (TDM) of valaciclovir (VA)/aciclovir (A) and valganciclovir/ganciclovir (VG/G) in critically ill patients is still a matter of debate. More data on the dose–concentration relationship might therefore be useful, especially in pediatrics where clinical practice is not adequately supported by robust PK studies. We developed and validated a new liquid chromatography-tandem mass spectrometry (LC-MS/MS) micro-method to simultaneously quantify A and G from plasma and dried plasma spots (DPS). The method was based on rapid organic extraction from DPS and separation on a reversed-phase C-18 UHPLC column after addition of deuterated internal standards. Accurate analyte quantification using SRM detection was then obtained using a Thermo Fisher Quantiva triple-quadrupole MS coupled to an Ultimate 3000 UHPLC. It was validated following international (EMA) guidelines for bioanalytical method validation and was tested on samples from pediatric patients treated with A, VG, or G for cytomegalovirus infection following solid organ or hematopoietic stem cell transplantation. Concentrations obtained from plasma and DPS were compared using Passing–Bablok and Bland–Altman statistical tests. The assay was linear over wide concentration ranges (0.01–20 mg/L) in both plasma and DPS for A and G, suitable for the expected therapeutic ranges for both Cmin and Cmax, accurate, and reproducible in the absence of matrix effects. The results obtained from plasma and DPS were comparable. Using an LC-MS/MS method allowed us to obtain a very specific, sensitive, and rapid quantification of these antiviral drugs starting from very low volumes (50 μL) of plasma samples and DPS. The stability of analytes for at least 30 days allows for cost-effective shipment and storage at room temperature. Our method is suitable for TDM and could be helpful for improving knowledge on PK/PD targets of antivirals in critically ill pediatric patients.
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- 2021
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6. A Case Report of Bacterial Peritonitis Caused by MBL-Producing Citrobacter werkmanii in Peritoneal Dialysis
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Federica Briano, Riccardo Ungaro, Laura Magnasco, Anna Marchese, F. Toscanini, Claudio Viscoli, and F. Dodi
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Citrobacter ,biology ,business.industry ,Avibactam ,medicine.medical_treatment ,Bacterial Peritonitis ,Continuous ambulatory peritoneal dialysis ,Ceftazidime ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Meropenem ,Peritoneal dialysis ,Microbiology ,chemistry.chemical_compound ,chemistry ,polycyclic compounds ,medicine ,Ceftolozane ,business ,medicine.drug - Abstract
Infections caused by Enterobacterales have become more difficult to treat due to increasing antibiotic resistance, in particular, in the case of production of carbapenemases. Bacterial peritonitis is a common complication of peritoneal dialysis, being Citrobacter spp., an uncommon cause of this syndrome. We report the first case of bacterial peritonitis in continuous ambulatory peritoneal dialysis (CAPD) caused by Citrobacter werkmanii resistant to all beta-lactams, gentamicin, and cotrimoxazole, and also the new anti-gram-negative molecules ceftazidime/avibactam and ceftolozane/tazobactam. The molecular analysis of the strain demonstrated the presence of blaVIM metallo-β-lactamase gene. The patient was effectively cured with a course of systemic tigecycline, colistin, and meropenem.
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- 2019
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7. Clinical presentation of secondary infectious complications in COVID-19 patients in intensive care unit treated with tocilizumab or standard of care
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Malgorzata Mikulska, Matteo Bassetti, Chiara Robba, Paolo Pelosi, Paolo Frisoni, Silvia Dettori, Lorenzo Ball, Federica Briano, Daniele Roberto Giacobbe, Nicolò Patroniti, Laura Magnasco, Lucia Taramasso, Chiara Dentone, Federica Portunato, Antonio Vena, Maurizio Loconte, and Raffaele D'Angelo
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musculoskeletal diseases ,Male ,medicine.medical_specialty ,BSI ,Antibodies, Monoclonal, Humanized ,Article ,Procalcitonin ,C-reactive protein ,law.invention ,tocilizumab ,chemistry.chemical_compound ,Tocilizumab ,law ,Internal medicine ,Internal Medicine ,medicine ,Humans ,Aged ,Retrospective Studies ,biology ,business.industry ,SARS-CoV-2 ,candidemia ,Ventilator-associated pneumonia ,Retrospective cohort study ,Standard of Care ,Hypothermia ,Middle Aged ,medicine.disease ,Intensive care unit ,COVID-19 Drug Treatment ,Intensive Care Units ,chemistry ,ICU ,biology.protein ,VAP ,SOFA score ,Female ,medicine.symptom ,Covid-19 ,business ,procalcitonin - Abstract
Objectives: The hypothesis of this study is that tocilizumab should affect common signs of infection due to its immunosuppressive properties. Primary aim of the study was to investigate whether the administration of tocilizumab to critically ill patients with COVID-19, led to a different clinical presentation of infectious complications compared to patients who did not receive tocilizumab. Secondary aim was investigating differences in laboratory parameters between groups. Methods: Single-centre retrospective study, enrolling COVID-19 patients who developed a microbiologically confirmed infectious complication [ventilator associated pneumonia or bloodstream infection] after intensive care unit [ICU] admission and either treated with tocilizumab or not [controls]. Results: A total of 58 patients were included, 25 treated with tocilizumab and 33 controls. Median time from tocilizumab administration to infection onset was 10 days [range 2-26]. Patients were 78% male, with median age 65 years [range 45-79]. At first clinical presentation of the infectious event, the frequency of hypotension [11/25, 44% vs. 11/33, 33%], fever [8/25, 32% vs. 10/33, 30%] or hypothermia [0/25,0%, vs. 2/33, 6%], and oxygen desaturation [6/25, 28% vs 4/33, 12%], as well as the frequency of SOFA score increase of ≥ 2 points [4/25, 16%,vs. 4/33, 12%] was similar in tocilizumab treated patients and controls [p>0.1 for all comparisons]. Among laboratory parameters, C-Reactive Protein elevation was reduced in tocilizumab treated patients compared to controls [8/25, 32% vs. 22/33, 67%, p=0.009]. Conclusion: The clinical features of infectious complications in critically ill patients with COVID-19 admitted to ICU were not affected by tocilizumab.
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- 2021
8. Higher Mortality and Intensive Care Unit Admissions in COVID-19 Patients with Liver Enzyme Elevations
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Lucia Taramasso, Francesca Bovis, Emanuele Delfino, Matteo Bassetti, Andrea De Maria, Sara Mora, Antonio Vena, Antonio Di Biagio, Daniele Roberto Giacobbe, Chiara Dentone, Federica Portunato, Malgorzata Mikulska, Mauro Giacomini, and Laura Magnasco
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Microbiology (medical) ,medicine.medical_specialty ,liver enzyme elevations ,COVID-19 ,SARS-CoV-2 ,mortality ,intensive care unit ,Microbiology ,digestive system ,Article ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Tocilizumab ,Interquartile range ,law ,Virology ,Internal medicine ,Risk of mortality ,Medicine ,030212 general & internal medicine ,lcsh:QH301-705.5 ,Darunavir ,business.industry ,Hazard ratio ,Intensive care unit ,Liver enzyme elevations ,Mortality ,Confidence interval ,chemistry ,lcsh:Biology (General) ,030211 gastroenterology & hepatology ,Ritonavir ,business ,medicine.drug - Abstract
The aim of the present study is to evaluate if an independent association exists between liver enzyme elevations (LEE) and the risk of mortality or intensive care unit (ICU) admissions in patients with COVID-19. This was a single-center observational study, recruiting all consecutive adults with COVID-19. The elevation of aspartate aminotransferase (AST) or alanine aminotransferase (ALT) to the highest level between COVID-19 diagnosis and hospital discharge was categorized according to a standardized toxicity grade scale. In total, 799 patients were included in this study, 39% of which were female, with a mean age of 69.9 (±16.0) years. Of these patients, 225 (28.1%) developed LEE of grade ≥2 after a median of three days (interquartile range (IQR): 0–8 days) from the diagnosis of COVID-19, and they were estimated to have a higher hazard of death or ICU admission (adjusted hazard ratio (aHR): 1.46, 95% confidence interval (CI): 1.14–1.88). The clinical and laboratory variables associated with the development of LEE were male sex, higher respiratory rate, higher gamma glutamyl transpeptidase (GGT) and lower albumin levels at baseline. Among the analyzed treatments, steroids, tocilizumab and darunavir/ritonavir correlated with LEE. In conclusion, LEE were associated with mortality and ICU admission among COVID-19 patients. While the origin of LEE is probably multifactorial, LEE evaluation could add information to the clinical and laboratory variables that are commonly evaluated during the course of COVID-19.
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- 2020
9. Tocilizumab and steroid treatment in patients with COVID-19 pneumonia
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Ferdinando Dodi, Marco Camera, Chiara Dentone, Silvia Dettori, Angelo Gratarola, Andrea De Maria, Chiara Russo, Antonio Ferrazin, Federico Baldi, Giorgio Da Rin, Stefania Tutino, A. Alessandrini, Daniele Roberto Giacobbe, Federica Portunato, Emanuela Barisione, Rachele Pincino, Sara Mora, Laura Labate, Maria Pia Sormani, Michele Mirabella, Giancarlo Icardi, Mauro Giacomini, Marco Berruti, Elisabetta Sasso, Malgorzata Mikulska, Lucia Taramasso, Paolo Pelosi, Laura Magnasco, Elisa Balletto, Emanuele Delfino, Federica Briano, Laura Ambra Nicolini, Bianca Bruzzone, Nirmala Rosseti, Antonio Di Biagio, Giovanni Mazzarello, Federica Toscanini, Antonio Vena, Alessio Signori, Chiara Sepulcri, Eva Schenone, Andrea Orsi, Matteo Bassetti, and Sabrina Beltramini
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Male ,0301 basic medicine ,Viral Diseases ,Pulmonology ,Cancer Treatment ,Anti-Inflammatory Agents ,Biochemistry ,COVID-19 ,C-reactive proteins ,Ferritin ,Hospitals ,Steroids ,Cytokine therapy ,Pneumonia ,Oxygen ,chemistry.chemical_compound ,Medical Conditions ,0302 clinical medicine ,Medicine and Health Sciences ,Clinical endpoint ,030212 general & internal medicine ,Darunavir ,Aged, 80 and over ,Multidisciplinary ,Organic Compounds ,Hazard ratio ,Middle Aged ,C-Reactive Proteins ,Chemistry ,Infectious Diseases ,Treatment Outcome ,Oncology ,Methylprednisolone ,Physical Sciences ,Medicine ,Female ,Coronavirus Infections ,Research Article ,Chemical Elements ,Hydroxychloroquine ,medicine.drug ,Adult ,medicine.medical_specialty ,Science ,Pneumonia, Viral ,030106 microbiology ,Cytokine Therapy ,Antibodies, Monoclonal, Humanized ,Antimalarials ,Betacoronavirus ,03 medical and health sciences ,Tocilizumab ,Internal medicine ,medicine ,Humans ,Pandemics ,Aged ,Ritonavir ,SARS-CoV-2 ,business.industry ,Organic Chemistry ,Chemical Compounds ,Biology and Life Sciences ,Proteins ,Protein Complexes ,Covid 19 ,HIV Protease Inhibitors ,medicine.disease ,COVID-19 Drug Treatment ,Health Care ,chemistry ,Respiratory failure ,Health Care Facilities ,Adjunctive treatment ,business ,Follow-Up Studies - Abstract
IntroductionCoronavirus disease 2019 (COVID-19) can lead to respiratory failure due to severe immune response. Treatment targeting this immune response might be beneficial but there is limited evidence on its efficacy.The aim of this study was to determine if early treatment of patients with COVID-19 pneumonia with tocilizumab and/or steroids was associated with better outcome.MethodsThis observational single-center study included patients with COVID-19 pneumonia who were not intubated and received either standard of care (SOC, controls) or SOC plus early (within 3 days from hospital admission) anti-inflammatory treatment. SOC consisted of hydroxychloroquine 400mg bid plus, in those admitted before March 24th, also darunavir/ritonavir. Anti-inflammatory treatment consisted of either tocilizumab (8mg/kg intravenously or 162mg subcutaneously) or methylprednisolone 1 mg/kg for 5 days or both. Failure was defined as intubation or death, and the endpoints were failure-free survival (primary endpoint) and overall survival (secondary) at day 30. Difference between the groups was estimated as Hazard Ratio by a propensity score weighted Cox regression analysis (HROW).ResultsOverall, 196 adults were included in the analyses. They were mainly male (67.4%), with comorbidities (78.1%) and severe COVID-19 pneumonia (83.7%). Median age was 67.9 years (range, 30-100) and median PaO2/FiO2200 mmHg (IQR 133-289). Among them, 130 received early anti-inflammatory treatment with: tocilizumab (n=29, 22.3%), methylprednisolone (n=45, 34.6%), or both (n=56, 43.1%). The adjusted failure-free survival among tocilizumab/methylprednisolone/SOC treated patients vs. SOC was 80.8% (95%CI, 72.8-86.7) vs. 64.1% (95%CI, 51.3-74.0), HROW0.48, 95%CI, 0.23-0.99; p=0.049. The overall survival among tocilizumab/methylprednisolone/SOC patients vs. SOC was 85.9% (95%CI, 80.7-92.6) vs. 71.9% (95%CI, 46-73), HROW0.41, 95%CI: 0.19-0.89, p=0.025.ConclusionEarly adjunctive treatment with tocilizumab, methylprednisolone or both may improve outcomes in non-intubated patients with COVID-19 pneumonia.
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- 2020
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10. Plasma DNA Profile Associated with DNASE1L3 Gene Mutations: Clinical Observations, Relationships to Nuclease Substrate Preference, and In Vivo Correction
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Vanja Sisirak, Lai-Shan Tam, Yueyang Wang, Wenlei Peng, Rossa W.K. Chiu, Lee Serpas, Alberto Magnasco, Pik Ki Lau, K.C. Allen Chan, Y.M. Dennis Lo, Wing-Shan Lee, Elisa Buti, Rebecca W.Y. Chan, Meng Ni, Diana S.C. Han, Priscilla Wong, Peiyong Jiang, Boris Reizis, Nora AlMutairi, Lydia Ho-Pui Tam, Ali Rashidfarrokhi, Alice S.H. Cheng, Patty P.P. Tse, Linda T. Hiraki, Stefano Volpi, Li Ka Shing Institute of Health Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, Department of Chemical Pathology, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, New Territories, Hong Kong SAR, Department of Pathology, New York University Grossman School of Medicine, New York, NY 10016, Clinica Pediatrica e Reumatologia, Centro per le malattie Autoinfiammatorie e Immunodeficienze, Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS) Istituto Giannina Gaslini, Via G. Gaslini 5, 16147 Genova, Dipartimento di Neuroscienze, Riabilitazione, Oftalmologia, Genetica e Scienze Materno-Infantili (DINOGMI), Università degli Studi di Genova, 16132 Genova, Division of Rheumatology, The Hospital for Sick Children, Toronto, ON M5G 1X5, Department of Medicine & Therapeutics, The Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, New Territories, Hong Kong SAR, Division of Nephrology, Dialysis and Transplantation, Istituto di Ricovero e Cura a Carattere Scientifico, Istituto Giannina Gaslini, 16147 Genova, Nefrologia e Dialisi, Azienda Ospedaliero Universitaria Meyer, 50139 Firenze, Immunology from Concept and Experiments to Translation (ImmunoConcept), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB), and Sabah Hospital, Jaber Al Ahmad Al Jaber Al Sabah Hospital
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0301 basic medicine ,[SDV]Life Sciences [q-bio] ,Cell ,Gene mutation ,Transgenic ,Substrate Specificity ,Transduction (genetics) ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,systemic lupus erythematosus ,Transduction, Genetic ,Lupus Erythematosus, Systemic ,cfDNA ,Genetics (clinical) ,biology ,Chemistry ,Dependovirus ,3. Good health ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,DNA fragmentation ,Genetic Vectors ,Mice, Transgenic ,autoimmune disease ,DNA Fragmentation ,Article ,03 medical and health sciences ,Transduction ,Genetic ,Genetics ,medicine ,Extracellular ,biomarkers ,circulating DNA ,liquid biopsy ,Animals ,Case-Control Studies ,DNA ,Disease Models, Animal ,Endodeoxyribonucleases ,Genetic Therapy ,Humans ,Mutation ,Gene ,Nuclease ,Lupus Erythematosus ,Animal ,Systemic ,Molecular biology ,030104 developmental biology ,Disease Models ,biology.protein - Abstract
International audience; Plasma DNA fragmentomics is an emerging area in cell-free DNA diagnostics and research. In murine models, it has been shown that the extracellular DNase, DNASE1L3, plays a role in the fragmentation of plasma DNA. In humans, DNASE1L3 deficiency causes familial monogenic systemic lupus erythematosus with childhood onset and anti-dsDNA reactivity. In this study, we found that human patients with DNASE1L3 disease-associated gene variations showed aberrations in size and a reduction of a ''CC'' end motif of plasma DNA. Furthermore, we demonstrated that DNA from DNASE1L3-digested cell nuclei showed a median length of 153 bp with CC motif frequencies resembling plasma DNA from healthy individuals. Adeno-associated virus-based transduction of Dnase1l3 into Dnase1l3-deficient mice restored the end motif profiles to those seen in the plasma DNA of wild-type mice. Our findings demonstrate that DNASE1L3 is an important player in the fragmentation of plasma DNA, which appears to act in a cell-extrinsic manner to regulate plasma DNA size and motif frequency.
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- 2020
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11. Bloodstream infections in critically ill patients with COVID-19
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Francesca Crea, Antonio Di Biagio, Lorenzo Ball, Antonio Vena, Chiara Dentone, Daniele Roberto Giacobbe, Anna Marchese, Iole Brunetti, Andrea Orsi, Alessio Signori, Giulia Codda, Denise Battaglini, Giancarlo Icardi, Lucia Taramasso, Nicolò Patroniti, Malgorzata Mikulska, Laura Magnasco, Bianca Bruzzone, Andrea De Maria, Paolo Pelosi, Matteo Bassetti, and Chiara Robba
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Male ,Enterococcus faecium ,Clinical Biochemistry ,Anti-Inflammatory Agents ,coronavirus ,Bacteremia ,030204 cardiovascular system & hematology ,BSI ,Biochemistry ,SARS‐CoV‐2 ,law.invention ,chemistry.chemical_compound ,0302 clinical medicine ,Risk Factors ,law ,Enterococcus faecalis ,030212 general & internal medicine ,Cross Infection ,Incidence ,Incidence (epidemiology) ,Hazard ratio ,steroid ,Enterobacteriaceae Infections ,Enterobacter aerogenes ,General Medicine ,Middle Aged ,Staphylococcal Infections ,Original Papers ,Intensive care unit ,Intensive Care Units ,Streptococcus pneumoniae ,Italy ,Methylprednisolone ,Pseudomonas aeruginosa ,Female ,Coronavirus Infections ,medicine.drug ,Staphylococcus aureus ,medicine.medical_specialty ,Critical Illness ,Pneumonia, Viral ,Antibodies, Monoclonal, Humanized ,Pneumococcal Infections ,Betacoronavirus ,03 medical and health sciences ,tocilizumab ,Tocilizumab ,COVID‐19 ,Internal medicine ,medicine ,Humans ,Pseudomonas Infections ,Pandemics ,Gram-Positive Bacterial Infections ,Aged ,Proportional Hazards Models ,Retrospective Studies ,Original Paper ,business.industry ,Proportional hazards model ,SARS-CoV-2 ,Candidemia ,COVID-19 ,Retrospective cohort study ,bacterial infections and mycoses ,Confidence interval ,COVID-19 Drug Treatment ,chemistry ,business ,human activities - Abstract
Background Little is known about the incidence and risk of intensive care unit (ICU)-acquired bloodstream infections (BSI) in critically ill patients with coronavirus disease 2019 (COVID-19). Materials and methods This retrospective, single-centre study was conducted in Northern Italy. The primary study objectives were as follows: (a) to assess the incidence rate of ICU-acquired BSI and (b) to assess the cumulative risk of developing ICU-acquired BSI. Results Overall, 78 critically ill patients with COVID-19 were included in the study. Forty-five episodes of ICU-acquired BSI were registered in 31 patients, with an incidence rate of 47 episodes (95% confidence interval [CI] 35-63) per 1000 patient-days at risk. The estimated cumulative risk of developing at least one BSI episode was of almost 25% after 15 days at risk and possibly surpassing 50% after 30 days at risk. In multivariable analysis, anti-inflammatory treatment was independently associated with the development of BSI (cause-specific hazard ratio [csHR] 1.07 with 95% CI 0.38-3.04 for tocilizumab, csHR 3.95 with 95% CI 1.20-13.03 for methylprednisolone and csHR 10.69 with 95% CI 2.71-42.17 for methylprednisolone plus tocilizumab, with no anti-inflammatory treatment as the reference group; overall P for the dummy variable = 0.003). Conclusions The incidence rate of BSI was high, and the cumulative risk of developing BSI increased with ICU stay. Further study will clarify if the increased risk of BSI we detected in COVID-19 patients treated with anti-inflammatory drugs is outweighed by the benefits of reducing any possible pro-inflammatory dysregulation induced by SARS-CoV-2.
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- 2020
12. Human p53 phosphorylation mimic, S392E, increases nonspecific DNA affinity and thermal stability
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Nichols, Nicole Magnasco and Matthews, Kathleen Shive
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Biochemistry -- Research ,DNA -- Genetic aspects ,Phosphorylation -- Genetic aspects ,Proteins -- Genetic aspects ,Gene mutations -- Physiological aspects ,Biological sciences ,Chemistry - Abstract
Research has been conducted on the nuclear phosphoprotein and transcription factor, tumor suppressor protein p53 the mutant form of which is a phosphorylation mimic. The analysis of the structural and functional differences between this mutant and the wilde-type protein has been carried out and the results are reported.
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- 2002
13. Protein-DNA binding correlates with structural thermostability for the full-length human p53 protein
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Nichols, Nicole Magnasco and Matthews, Kathleen Shive
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DNA binding proteins -- Analysis ,Protein binding -- Analysis ,Tumor suppressor genes -- Physiological aspects ,Structural stability -- Physiological aspects ,Biological sciences ,Chemistry - Abstract
The thermal stability in relation to DNA binding of the full-length p53 protein demonstrates the binding of consensus double-stranded DNA targets by p53 DNA binding domain over a range of temperature.
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- 2001
14. Posttransplant De Novo Donor-Specific HLA Antibodies Identify Pediatric Kidney Recipients at Risk for Late Antibody-Mediated Rejection
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Fabrizio Ginevri, Marco Zecca, Angela Nocco, Gian Marco Ghiggeri, A. Tagliamacco, Michela Cioni, Angela Rita Sementa, Massimo Cardillo, Patrizia Comoli, Luciana Ghio, Annalisa Innocente, Alberto Magnasco, P. Ceriolo, Arcangelo Nocera, Giacomo Garibotto, F. Poli, Angelica Parodi, and Iris Fontana
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Adult ,Graft Rejection ,Male ,medicine.medical_specialty ,Time Factors ,Adolescent ,Human leukocyte antigen ,Gastroenterology ,Isoantibodies ,Pathogenesis ,Young Adult ,chemistry.chemical_compound ,Postoperative Complications ,HLA Antigens ,Risk Factors ,Internal medicine ,medicine ,Humans ,Immunology and Allergy ,Pharmacology (medical) ,Child ,Kidney transplantation ,Aged ,Transplantation ,Creatinine ,Kidney ,biology ,business.industry ,Graft Survival ,Infant ,Middle Aged ,medicine.disease ,Kidney Transplantation ,Tissue Donors ,Surgery ,body regions ,medicine.anatomical_structure ,chemistry ,Child, Preschool ,biology.protein ,Female ,Antibody ,business - Abstract
The emerging role of humoral immunity in the pathogenesis of chronic allograft damage has prompted research aimed at assessing the role of anti-HLA antibody (Ab) monitoring as a tool to predict allograft outcome. Data on the natural history of allografts in children developing de novo Ab after transplantation are limited. Utilizing sera collected pretransplant, and serially posttransplant, we retrospectively evaluated 82 consecutive primary pediatric kidney recipients, without pretransplant donor-specific antibodies (DSA), for de novo Ab occurrence, and compared results with clinical-pathologic data. At 4.3-year follow up, 19 patients (23%) developed de novo DSA whereas 24 had de novo non-DSA (NDSA, 29%). DSA appeared at a median time of 24 months after transplantation and were mostly directed to HLA-DQ antigens. Among the 82 patients, eight developed late/chronic active C4d+ antibody-mediated rejection (AMR), and four C4d-negative AMR. Late AMR correlated with DSA (p < 0.01), whose development preceded AMR by 1-year median time. Patients with DSA had a median serum creatinine of 1.44 mg/dL at follow up, significantly higher than NDSA and Ab-negative patients (p < 0.005). In our pediatric cohort, DSA identify patients at risk of renal dysfunction, AMR and graft loss; treatment started at Ab emergence might prevent AMR occurrence and/or progression to graft failure.
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- 2012
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15. The Hydrogen Bond
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Valerio Magnasco
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Bond length ,Chemical bond ,Chemistry ,Computational chemistry ,Hydrogen bond ,Low-barrier hydrogen bond ,Single bond ,Triple bond ,Bond order - Published
- 2010
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16. The van der Waals Bond
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Valerio Magnasco
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symbols.namesake ,Chemistry ,symbols ,Van der Waals strain ,Van der Waals surface ,Thermodynamics ,Van der Waals radius ,Atomic physics ,van der Waals force - Published
- 2010
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17. The Chemical Bond
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Valerio Magnasco
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Chemical bond ,Computational chemistry ,Bond strength ,Chemistry ,Three-center two-electron bond ,Single bond ,Molecular orbital diagram ,Valence bond theory ,Pi bond ,Bond order - Published
- 2010
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18. Modeling the resonant release of synaptic transmitter by hair cells as an example of biological oscillators with cooperative steps
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Marcelo O. Magnasco, Daniel Andor-Ardó, Oreste Piro, and A. J. Hudspeth
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Models, Neurological ,Cooperativity ,Neurotransmission ,Biology ,Synaptic Transmission ,Synaptic vesicle ,Biophysical Phenomena ,Synapse ,symbols.namesake ,chemistry.chemical_compound ,Biological Clocks ,Synaptic augmentation ,Hair Cells, Auditory ,Neurotransmitter ,Hopf bifurcation ,Neurotransmitter Agents ,Multidisciplinary ,Vesicle ,Anatomy ,Biological Sciences ,Markov Chains ,Nonlinear Dynamics ,chemistry ,symbols ,Biophysics ,Synaptic Vesicles - Abstract
The initial synapses of the auditory system, which connect hair cells to afferent nerve fibers, display two unusual features. First, synaptic transmission occurs in a multiquantal fashion: the contents of multiple synaptic vesicles are discharged simultaneously. Second, synaptic transmission may be tuned to specific frequencies of stimulation. We developed a minimal theoretical model to explore the possibility that hair-cell synapses achieve both multiquantal release and frequency selectivity through a cooperative mechanism for the exocytotic release of neurotransmitter. We first characterized vesicle release as a four-step cycle at each release site, then generalized the result to an arbitrary number of steps. The cyclic process itself induces some degree of resonance, and may display a stable, underdamped fixed point of the release dynamics associated with a pair of complex eigenvalues. Cooperativity greatly enhances the frequency selectivity by moving the eigenvalues toward the imaginary axis; spontaneously oscillatory release can arise beyond a Hopf bifurcation. These phenomena occur both in the macroscopic limit, when the number of release sites involved is very large, and in the more realistic stochastic regime, when only a limited number of release sites participate at each synapse. It is thus possible to connect multiquantal release with frequency selectivity through the mechanism of cooperativity.
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- 2010
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19. Hückel transformation theory of ground state HF
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Valerio Magnasco
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Electric dipole moment ,Valence (chemistry) ,Chemistry ,General Physics and Astronomy ,Physical and Theoretical Chemistry ,Bond energy ,Atomic physics ,Hückel method ,Ground state ,Bond-dissociation energy - Abstract
In the elementary Huckel theory of ground state HF at its simplest valence level the two unknown parameters ∣αp − αh∣ and ∣β∣ can be determined in terms of experimental bond dissociation energy and electric dipole moment. If some sp hybridization is admitted on F in a bond orbital approximation, optimization of the resulting Huckel energy against the hybridization parameter ω using 1-term SCF/STOs shows that little hybridization (ω ≈ 8°) gives a 3% increase in the bond energy parameter ∣β∣ and a 14% reduction in the value of the formal charges ∣δ∣ on the interacting atoms.
- Published
- 2009
- Full Text
- View/download PDF
20. Hückel transformation theory of the hybridization problem in NH3
- Author
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Valerio Magnasco
- Subjects
Valence (chemistry) ,Molecular geometry ,Chemistry ,Computational chemistry ,Orthogonal transformation ,General Physics and Astronomy ,Physical and Theoretical Chemistry ,Ground state ,Axial symmetry ,Molecular physics ,Lone pair - Abstract
Huckel transformation theory is applied to the study of the hybridization problem in ground state NH 3 . Under assumptions similar to those recently introduced for H 2 O, minimization of the model Huckel energy at the valence level yields a trigonometric relation between bond angle and hybridization parameter showing that hybridization opens the interbond angle beyond 90°. A further orthogonal transformation mixing in AOs belonging to A 1 and E symmetry yields four orthogonal sp 3 hybrids of C 3v symmetry on nitrogen that can be engaged in the axially symmetric lone pair and three equivalent straight N–H bonds making the experimental interbond angle.
- Published
- 2009
- Full Text
- View/download PDF
21. On the hybridization problem in H2O by Hückel transformation theory
- Author
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Valerio Magnasco
- Subjects
Delocalized electron ,Valence (chemistry) ,Chemistry ,Computational chemistry ,Orthogonal transformation ,General Physics and Astronomy ,Physical and Theoretical Chemistry ,Valence electron ,Ground state ,Lone pair ,Molecular physics ,Basis set - Abstract
An orthogonal transformation of the oxygen valence AOs belonging to A 1 symmetry to an ω -hybridized sp basis set allows for useful simplifications reducing Huckel transformed matrix for ground state H 2 O to nearly block-diagonal form. Neglecting delocalization of the hybrid lone pair into the bond, minimization of the resulting Huckel energy shows that for ω ≠ 0 the interbond angle opens beyond 90°. A further orthogonal transformation involving the B 2 y AO yields three orthogonal sp 2 hybrids of C 2v symmetry on oxygen which can be engaged in two equivalent straight O–H bonds making the experimental interbond angle and locally minimizing the Huckel energy of the valence electron configuration.
- Published
- 2009
- Full Text
- View/download PDF
22. Mutational analysis of protein splicing, cleavage, and self-association reactions mediated by the naturally split Ssp DnaE intein
- Author
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Nichols, Nicole Magnasco and Evans, Thomas C., Jr.
- Subjects
Mutation (Biology) -- Analysis ,Alanine -- Spectra ,Protein research ,Biological sciences ,Chemistry - Abstract
A detailed examination of both universal and split Synechocystis sp. PCC6803 (Ssp) DnaE intein-specific steps in the protein splicing pathway is performed due to the ability to separately purify the naturally Ssp DnaE intein domains. Substitution of the penultimate intein residue (alanine) with a typically conserved histidine did not increase the rate or extent of trans-splicing or cleavage under typical assay conditions.
- Published
- 2004
23. Zinc ion effects on individual Ssp DnaE intein splicing steps: regulating pathway progression
- Author
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Nichols, Nicole Magnasco, Benner, Jack S., Martin, Deana D., and Evans, Thomas C. Jr.
- Subjects
Bacterial proteins -- Analysis ,Zinc -- Influence ,Chemical reaction, Rate of -- Analysis ,Protein binding -- Analysis ,Biological sciences ,Chemistry - Abstract
Research elucidates specific reaction steps inhibited by zinc and reaction intermediates of the naturally split, self-splicing DnaE intein from Synechocystis PCC6803. The intermediates reflect the intein association. Data show that at equimolar concentrations of zinc chloride and intein domains maximum inhibition of the splicing reaction is observed, indicating that a 1:1 zinc:intein binding stoichiometry.
- Published
- 2003
24. Keesom coefficients in gases
- Author
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Camilla Costa, Arnaldo Rapallo, Valerio Magnasco, and Michele Battezzati
- Subjects
Chemistry ,Isotropy ,General Physics and Astronomy ,Interaction energy ,KEESOM COEFFICIENTS ,SERIES EXPANTION ,DIPOLE AND QUADRUPOLE MOMENTS ,Polar ,Molecule ,Asymptotic formula ,Physical and Theoretical Chemistry ,Atomic physics ,Dispersion (chemistry) ,Axial symmetry ,MULTIPOLE MOMENTS ,Dimensionless quantity - Abstract
T-dependent long-range Keesom coefficients are evaluated up to the R-10 term for small values of the dimensionless parameter vertical bar a(ll ')vertical bar For large values of vertical bar all 'vertical bar, I corrections must be introduced mostly for the dipole-dipole term, the correct values of Q being best obtained from a recently derived asymptotic formula. The corresponding attractive energies are the isotropic electrostatic contributions to the interaction energy and are temperature-dependent. Comparison with long-range induction and dispersion energy results for some simple polar axially symmetric molecules in the gas phase shows that at R = 10a(0) and T = 293 K the electrostatic dipole-dipole component is dominant for vertical bar a(11)vertical bar > 0.5. For centrosymmetric molecules the corresponding electrostatic contribution is usually negligible with respect to dispersion.
- Published
- 2006
- Full Text
- View/download PDF
25. Short-range interaction energy for ground state H2+
- Author
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Camilla Costa, Michele Battezzati, and Valerio Magnasco
- Subjects
Range (particle radiation) ,Chemistry ,Peek ,General Physics and Astronomy ,Interaction energy ,Physical and Theoretical Chemistry ,Atomic physics ,Ground state - Abstract
Explicit analytical formulae are presented for the exact R n -expansion of the short-range electronic interaction energy for ground state H 2 + up to n = 10. The corresponding calculated values for small values of the internuclear distance are in excellent agreement with Peek’s accurate results up to R = 0.30 a 0 .
- Published
- 2006
- Full Text
- View/download PDF
26. A VB calculation for the excited 1Σu+ bound state of the H2 molecule
- Author
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Valerio Magnasco and Roberto Peverati
- Subjects
Bond length ,Modern valence bond theory ,Chemical bond ,Chemistry ,Excited state ,General Physics and Astronomy ,Single bond ,Valence bond theory ,Physical and Theoretical Chemistry ,Atomic physics ,Bond order ,Generalized valence bond - Abstract
It is shown in this Letter that the erroneous bond length resulting for the bound 1 Σ u + state of H 2 described by the ionic valence bond structure over the minimum set of 1s STO functions is corrected by the variational inclusion with a substantial weight of the singly excited covalent structures involving 2s and 2pσ STOs onto each H atom. The corresponding value for the molecular energy resulting from the complete optimization of the orbital exponents gives now over 96% of the accurate Kolos–Wolniewicz results.
- Published
- 2006
- Full Text
- View/download PDF
27. Frozen-core full-CI calculation of imaginary frequency-dependent dipole polarizabilities of ground state BeH2 and the C6 dispersion coefficients of its homodimer
- Author
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Giuseppe Figari, Valerio Magnasco, Antonio Monari, Camilla Costa, Gian Luigi Bendazzoli, Marina Rui, Dipartimento di Chimica Fisica e Inorganica, Alma Mater Studiorum Università di Bologna [Bologna] (UNIBO), Dipartimento di Chimica e Chimica Industriale, and Universita degli studi di Genova
- Subjects
010304 chemical physics ,Chemistry ,Isotropy ,General Physics and Astronomy ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Core (optical fiber) ,Dipole ,Quantum mechanics ,0103 physical sciences ,Dispersion (optics) ,[CHIM]Chemical Sciences ,Slater determinant ,Physical and Theoretical Chemistry ,Atomic physics ,Ground state ,Anisotropy ,ComputingMilieux_MISCELLANEOUS ,Interpolation - Abstract
Frozen-core full-CI calculations of frequency-dependent dipole polarizabilities (FDPs) of ground state BeH 2 at the experimental distance of R = 2.506 a 0 have been performed using an extended set of 208 contracted GTO functions [9s9p5d3f] on Be and [9s8p6d] on H involving about 58 × 10 6 symmetry-adapted Slater determinants. The Casimir–Polder integral was then evaluated analytically using eight optimized imaginary frequencies chosen according to a recently developed interpolation technique which allows for the evaluation of the three dipole dispersion constants for the BeH 2 –BeH 2 homodimer, from which isotropic C 6 and anisotropy γ 6 coefficients are derived for the first time.
- Published
- 2005
- Full Text
- View/download PDF
28. On the principle of maximum overlap in molecular orbital theory
- Author
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Valerio Magnasco
- Subjects
Quantitative Biology::Biomolecules ,Modern valence bond theory ,Chemistry ,General Physics and Astronomy ,Single bond ,Valence bond theory ,Orbital overlap ,Physical and Theoretical Chemistry ,Atomic physics ,Bond energy ,Pi bond ,Generalized valence bond ,Bond order - Abstract
Making the usual assumptions typical of elementary Huckel theory including overlap it is shown that the Huckel energy of the two-electron bond is minimized for orbitals having maximum overlap, which yields maximum strength for the straight bond. Analysis of the bond energy for the general A–B bond shows for the molecular orbital description a more complicated dependence on the one-electron exchange-overlap densities of A and B than that recently derived by us in a corresponding valence bond treatment.
- Published
- 2005
- Full Text
- View/download PDF
29. On the principle of maximum overlap in valence bond theory
- Author
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Camilla Costa and Valerio Magnasco
- Subjects
Quantitative Biology::Biomolecules ,Modern valence bond theory ,Chemical bond ,Chemistry ,Sextuple bond ,General Physics and Astronomy ,Single bond ,Valence bond theory ,Physical and Theoretical Chemistry ,Atomic physics ,Bond energy ,Bond order ,Generalized valence bond - Abstract
Revisitation of the Heitler–London theory for H2 shows that the exchange-overlap component of the bond energy has a strength which is maximum at the bond length. Making the usual assumptions typical of elementary Huckel theory including overlap it is similarly found that in the valence bond description of the chemical bond covalent bonding is strongest for atomic orbitals maximizing the strength of the complete exchange-overlap component of the bond energy.
- Published
- 2005
- Full Text
- View/download PDF
30. A model for the van der Waals bond
- Author
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Valerio Magnasco
- Subjects
chemistry.chemical_classification ,Chemistry ,Atoms in molecules ,Van der Waals strain ,Van der Waals surface ,General Physics and Astronomy ,symbols.namesake ,Chemical physics ,Physics::Atomic and Molecular Clusters ,symbols ,Non-covalent interactions ,Molecule ,Van der Waals radius ,Physics::Atomic Physics ,Physical and Theoretical Chemistry ,van der Waals force ,Atomic physics ,Dispersion (chemistry) - Abstract
A two-state model of van der Waals (VdW) interactions is presented which completes the elementary description of the interactions occurring between atoms and molecules. A weak VdW bond is formed between closed-shell atoms or molecules as soon as the small Pauli repulsion is offset in long range by attractive VdW interactions. These are distortion and dispersion interactions, related to the electric properties of the interacting molecules, and described as small second-order effects in terms of long range interaction integrals β s. The explicit forms of these β s are derived from classical electrostatics for atom–atom, atom–linear molecule dispersion, and atom–linear molecule induction. Comparison between C 6 dispersion and induction coefficients for simple homodimers shows that dispersion is, in general, the most important attractive VdW interaction in long range.
- Published
- 2004
- Full Text
- View/download PDF
31. A model for the heteropolar bond
- Author
-
Valerio Magnasco
- Subjects
Bond strength ,Chemistry ,Binding energy ,General Physics and Astronomy ,Bond order ,Diatomic molecule ,Homonuclear molecule ,Electric dipole moment ,Chemical bond ,Physics::Atomic and Molecular Clusters ,Physics::Atomic Physics ,Physical and Theoretical Chemistry ,Atomic physics ,Ground state - Abstract
The simple Huckel model of the chemical bond, proposed earlier and applied mostly to homonuclear diatomics, is extended to the case of the heteropolar bond. The filling of electrons into the MO levels has now more possibilities than in the previous homonuclear case. For orthogonal AOs, the fundamental quantities entering the model, the atomic energy difference α2−α1 and the bond integral |β| can be determined using the experimental values of the atomization energy De and the electric dipole moment μ. The results obtained for the two-electron σ-bonds occurring in the first-row series of ground state diatomic hydrides are analyzed and shortly discussed.
- Published
- 2003
- Full Text
- View/download PDF
32. Short-range interactions in ground state H2+ using fluctuation theory techniques
- Author
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Valerio Magnasco and Michele Battezzati
- Subjects
Range (mathematics) ,Chemistry ,Quantum mechanics ,Coordinate system ,General Physics and Astronomy ,Atom (order theory) ,Function (mathematics) ,Physical and Theoretical Chemistry ,Ground state ,Integral equation ,Eigenvalues and eigenvectors ,Symmetry (physics) - Abstract
Fluctuation theory techniques are used to evaluate short-range interactions in ground state H 2 + by calculating in a direct way small energy differences taken with respect to the ground state of the united atom He + . Appropriate coordinate transformation allows to obtain inner and outer Hermitean eigenvalue equations, which are then solved perturbatively in positive powers of the internuclear distance R choosing He + as unperturbed problem. The separation constants are deduced from the regularity conditions on the functions. Next, the function endowed with the right symmetry is constructed by solving an integral equation in a perturbative way. A second-order approximation gives short-range interaction coefficients which are exact up to R 5 .
- Published
- 2003
- Full Text
- View/download PDF
33. On the interpolation of frequency-dependent polarizabilities through a readily integrable expression
- Author
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Giuseppe Figari and Valerio Magnasco
- Subjects
Integrable system ,Chemistry ,Mathematical analysis ,General Physics and Astronomy ,Hydrogen atom ,Expression (computer science) ,Faithful representation ,Polarizability ,Quantum mechanics ,Physics::Atomic Physics ,Physical and Theoretical Chemistry ,Ground state ,Multipole expansion ,Interpolation - Abstract
An elementary technique has been developed to intercept available values of a given atomic or molecular multipole dynamic polarizability through an expression providing a faithful representation for its dependence on the imaginary frequency. The explicitation of the implied interpolative parameters is obtained by imposing that the available data ought to be exactly intercepted. Numerical tests concerning a ground state hydrogen atom have confirmed the reliability of such interpolative procedure for extracting continuous trends from some initial estimates performed on multipole polarizabilities and for evaluating dispersion constants.
- Published
- 2003
- Full Text
- View/download PDF
34. On the α and β parameters in Hückel theory including overlap for simple σ molecular systems
- Author
-
Valerio Magnasco
- Subjects
Chemistry ,General Physics and Astronomy ,Hückel method ,Diatomic molecule ,Homonuclear molecule ,Bond length ,Chemical bond ,Simple (abstract algebra) ,Quantum mechanics ,Physics::Atomic and Molecular Clusters ,Molecular orbital ,Physical and Theoretical Chemistry ,Atomic physics ,Bond energy - Abstract
Ordinary LCAO-MO theory allows for the ab-initio definition of α and β parameters occurring in the Huckel theory including overlap of simple σ homonuclear systems. One- and two-electron terms not included in Huckel theory are explicitly considered. When such correction terms are neglected in the very spirit of Huckel theory, simple calculation in the hydrogenic approximation for the ground states of H2+, H2, He2+, He2 at the corresponding bond lengths shows semiquantitative agreement with experimental or accurate theoretical results for the bond energies, providing a simple and clear physical picture of the nature of the chemical bond.
- Published
- 2002
- Full Text
- View/download PDF
35. Human p53 Phosphorylation Mimic, S392E, Increases Nonspecific DNA Affinity and Thermal Stability
- Author
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Kathleen S. Matthews and Nicole Magnasco Nichols
- Subjects
Hot Temperature ,HMG-box ,Protein Conformation ,Molecular Sequence Data ,Mutant ,Biology ,medicine.disease_cause ,Biochemistry ,Cell Line ,chemistry.chemical_compound ,Enzyme Stability ,medicine ,Humans ,Phosphorylation ,Transcription factor ,Mutation ,Base Sequence ,Circular Dichroism ,DNA ,DNA-binding domain ,Recombinant Proteins ,Gene Expression Regulation ,chemistry ,Mutagenesis, Site-Directed ,Tumor Suppressor Protein p53 ,Plasmids ,Protein Binding ,P53 binding - Abstract
DNA binding is crucial to the protective role of the tumor suppressor protein p53, a nuclear phosphoprotein and transcription factor. The mutant human p53 protein S392E is a phosphorylation mimic that has been previously demonstrated to represent an "activated" form of p53 in both in vivo and in vitro assays [Hupp and Lane (1995) J. Biol. Chem. 270, 18165; Hao et al. (1996) J. Biol. Chem. 271, 29380]. Herein, we describe an analysis of structural and functional differences between this mutant and the wild-type protein. Structurally, the S392E protein exhibits increased thermal stability compared to wild-type p53, as monitored by circular dichroism and conformational antibody Ab1620 reactivity. These structural effects include alterations to the core DNA binding domain, remote in sequence space from the site of mutation. Functionally, the S392E mutation does not increase p53 binding to its 20 bp consensus DNA sequence in the absence of nonspecific DNA additives. In contrast, affinity of S392E for a 20 bp nonspecific DNA sequence is enhanced. Embedding 20 bp consensus DNA in the context of longer DNA sequences does not substantially alter S392E affinity, whereas wild-type affinity for these DNAs decreases with increased proportion of nonspecific DNA. These differences may account for the S392E "activated" phenotype and illuminate the role of this modified p53 in vivo.
- Published
- 2001
- Full Text
- View/download PDF
36. A simple polynomial variational-perturbative approach to the evaluation of dynamic multipole polarizabilities for a ground-state hydrogen atom
- Author
-
Giuseppe Figari and Valerio Magnasco
- Subjects
Matrix (mathematics) ,Polynomial ,Atomic orbital ,Chemistry ,Operator (physics) ,Excited state ,Quantum mechanics ,General Physics and Astronomy ,Physical and Theoretical Chemistry ,Linear combination ,Ground state ,Multipole expansion - Abstract
Small well-shaped basis sets have been used to perform highly accurate variational-perturbative evaluations of dynamic (frequency-dependent) multipole polarizabilities for a hydrogen atom in its ground state. Their structure has been suggested by the ab initio polynomial power expansion we have recently developed to get correspondingly exact results within a finite range covering the region of low frequencies. The frequency-dependent coefficients of the optimized linear combinations of the excited pseudostate orbitals were obtained by diagonalizing the representative matrix of the excitation operator from the ground state. High levels of accuracy have been observed over a set of frequencies now covering the complete real and imaginary ranges.
- Published
- 2001
- Full Text
- View/download PDF
37. p53 Unfolding Detected by CD but Not by Tryptophan Fluorescence
- Author
-
Nicole Magnasco Nichols and Kathleen S. Matthews
- Subjects
Protein Denaturation ,Protein Folding ,Circular dichroism ,Quenching (fluorescence) ,Tetrameric protein ,Circular Dichroism ,Potassium Iodide ,Tryptophan ,Biophysics ,Cell Biology ,DNA-binding domain ,Biochemistry ,Fluorescence ,Crystallography ,chemistry.chemical_compound ,Spectrometry, Fluorescence ,chemistry ,Urea ,Humans ,Tumor Suppressor Protein p53 ,Guanidine ,Molecular Biology - Abstract
Full-length human p53 protein was examined using tryptophan fluorescence and circular dichroism spectroscopy (CD) to monitor unfolding. No significant alteration in tryptophan fluorescence for the tetrameric protein was detectable over a wide range of either urea or guanidine hydrochloride concentrations, in contrast to results with the isolated DNA binding domain [Bullock et al. (1997) Proc. Natl. Acad. Sci. USA 94, 14338]. Under similar denaturant conditions, CD demonstrated significant protein unfolding for the full-length wild-type protein, with increased apparent structure loss compared to that detected during thermal denaturation [Nichols and Matthews (2001) Biochemistry 40, 3847]. Examination of X-ray structures containing two of the four tryptophan residues of a p53 monomer suggested local environments consistent with quenched fluorophores. Exploration of p53 fluorescence using potassium iodide as a quencher confirmed that these fluorophores are already substantially quenched in the native structure, and this quenching is not relieved during protein unfolding.
- Published
- 2001
- Full Text
- View/download PDF
38. A simple polynomial approach to the exact perturbative evaluation of low-frequency dynamic polarizabilities for a ground-state hydrogen atom
- Author
-
Giuseppe Figari and Valerio Magnasco
- Subjects
Power series ,Polynomial ,Polarizability ,Chemistry ,Quantum mechanics ,Convergence (routing) ,General Physics and Astronomy ,Hydrogen atom ,Physical and Theoretical Chemistry ,Low frequency ,Ground state ,Multipole expansion - Abstract
A recently proposed exact power expansion for the dynamic (frequency-dependent) multipole polarizabilities of a ground-state hydrogen atom has been improved keeping its simple polynomial structure substantially unaffected and enlarging its range of convergence. The improvement is performed by adding unexpanded frequency terms taken from the formal expression of the polarizability as a sum-over-states and subtracting their corresponding power expansions. The enlarged range of convergence obtained in this way covers all real frequencies of physical importance and the related imaginary frequencies.
- Published
- 2001
- Full Text
- View/download PDF
39. Glucose infusion test: A new screening test for vascular access recirculation
- Author
-
Francesco Copello, Sandro Alloatti, Alberto Magnasco, Giovanna Bonfant, and Paolo Solari
- Subjects
dialysis efficiency ,medicine.medical_specialty ,medicine.medical_treatment ,Vascular access ,Urology ,chemistry.chemical_compound ,Catheters, Indwelling ,Bolus (medicine) ,Glucose infusion ,Renal Dialysis ,In vivo ,medicine ,Humans ,Urea ,Detection limit ,urea test ,business.industry ,vascular access ,Confidence interval ,Surgery ,cardiopulmonary recirculation ,Glucose ,chemistry ,Nephrology ,Hemodialysis ,business - Abstract
Glucose infusion test: A new screening test for vascular access recirculation. Background Vascular access recirculation is an important cause of diminished dialysis efficiency. We propose a new screening test based on glucose infusion as a tracer for recirculation. Methods The glucose infusion test (GIT) protocol comprises a basal blood sample (A) from the arterial port, a 5 mL bolus of 20% glucose into the venous chamber (time 0), followed by a second sample (B) in four seconds (from 13 to 17 s with Q B 300 mL/min) from the same port. The blood glucose level is determined at the bedside on A and B with a reflectance photometer (CV 1.8%). Interpretation of the test is straightforward: If B=A, there is no recirculation, whereas if B > A, recirculation can be calculated from the regression equation: 0.046 × (B - A) + 0.07, obtained from in vitro tests reproducing artificial recirculation at 0, 5, and 10%. To validate this new method in vivo, we compared GIT and the urea test on 39 hemodialysis patients, obtaining a good correlation ( r = 0.93). The two tests were considered positive (recirculation present) when the lower 95% confidence intervals were more than zero. Results Our patients were divided into two groups: those with (22 out of 39, mean recirculation 11.8%) or without recirculation (17 out of 39, mean 0.06%). The urea test did not recognize 7 out of 22 patients because they had a small recirculation below the urea test limit of detection. Conclusions GIT was more sensitive (detection limit 0.3%), simpler, and immediate in showing the results than the urea test. It is an accurate and low-cost technique for screening and follow-up of vascular access in a dialysis unit.
- Published
- 2000
- Full Text
- View/download PDF
40. Long-range dispersion and induction coefficients for the homodimers of Li2, Na2 and K2
- Author
-
Massimo Ottonelli, Camilla Costa, Giuseppe Figari, Marina Rui, and Valerio Magnasco
- Subjects
Computational chemistry ,Explicit formulae ,Chemistry ,Dispersion (optics) ,Range (statistics) ,General Physics and Astronomy ,Physical and Theoretical Chemistry ,Anisotropy ,Molecular physics ,Spectral line - Abstract
Long-range dispersion and induction coefficients for the homodimers of Li2, Na2, K2 are evaluated in the LALBM scheme using explicit formulae presented previously and numerical values of moments, polarizabilities and dispersion constants obtained from 2-term reduced spectra of the Kaiserslautern group. While induction coefficients are 5–8 times smaller than dispersion, induction anisotropies are always larger than the corresponding dispersion anisotropies for all homodimers.
- Published
- 1999
- Full Text
- View/download PDF
41. Polarizability pseudospectra and dispersion coefficients for H(1s)-H(1s)
- Author
-
Magnasco, Valerio, Ottonelli, Massimo, Figari, G., Rui, Marina, and Costa, Camilla
- Subjects
Basis (linear algebra) ,Chemistry ,Polarizability ,Computational chemistry ,Dispersion (optics) ,Biophysics ,Exponent ,Physical and Theoretical Chemistry ,Atomic physics ,Condensed Matter Physics ,Multipole expansion ,Molecular Biology - Abstract
Pseudostate decomposition of the first five multipole static polarizabilities of H(1s) obtained from a Givens-Householder diagonalization of (H 0 - EE0) over a N-term STO basis with orbital exponent c = 1 allows for a rapidly convergent evaluation of c 2n dispersion coefficients for H(1s)-H(1s). Twenty-five term pseudospectra with exact ψ0 give C2n values that are accurate to at least 16 significant figures up to 2 n = 14.
- Published
- 1998
- Full Text
- View/download PDF
42. Long-range induction coefficients for like centrosymmetric linear molecules and an application to H2–H2
- Author
-
Massimo Ottonelli, Camilla Costa, Marina Rui, Valerio Magnasco, and Giuseppe Figari
- Subjects
Range (particle radiation) ,Computational chemistry ,Chemistry ,Dispersion (optics) ,Isotropy ,General Physics and Astronomy ,Linear molecular geometry ,Tensor ,Physical and Theoretical Chemistry ,Anisotropy ,Molecular physics - Abstract
The C 8 and C 10 long-range induction coefficients for two like centrosymmetric linear molecules are derived explicitly using the irreducible properties of spherical tensor operators. An application to the H 2 –H 2 system shows that whereas the isotropic induction coefficients are 50–100 times smaller than dispersion, the induction anisotropies γ n are always larger than the corresponding dispersion anisotropies.
- Published
- 1998
- Full Text
- View/download PDF
43. Long-range dispersion coefficients for like centrosymmetric linear molecules and an application to H2H2
- Author
-
Camilla Costa, Giuseppe Figari, Valerio Magnasco, Massimo Ottonelli, and Marina Rui
- Subjects
Coupling ,Associated Legendre polynomials ,Chemistry ,Explicit formulae ,Isotropy ,Mathematical analysis ,Dispersion (optics) ,Intermolecular force ,Linear molecular geometry ,Physical and Theoretical Chemistry ,Condensed Matter Physics ,Biochemistry ,London dispersion force - Abstract
The real spherical tensor theory of long-range intermolecular coefficients developed in previous papers is applied to derive explicit formulae for the first three dispersion coefficients for like centrosymmetric linear molecules. The expansion of angledependent coefficients in associated Legendre polynomials allows one to identify the isotropic and anisotropic components of the dispersion interaction in terms of London dispersion constants, the treatment of higher coefficients being simplified by the coupling of the elementary (1, 1′)-polarizations to resultant angular momenta LA and LB onto each molecule. The contributions from all coupling schemes are given explicitly for C6, C8, c10, and numerical results are presented for H2H2 using two-term reduced spectra values from the Kaiserlautern group.
- Published
- 1998
- Full Text
- View/download PDF
44. Differential equations in quantum mechanics
- Author
-
Valerio Magnasco
- Subjects
Examples of differential equations ,Stochastic partial differential equation ,Nonlinear system ,Classical mechanics ,Linear differential equation ,Chemistry ,Differential equation ,Quantum mechanics ,Differential algebraic equation ,Numerical partial differential equations ,Separable partial differential equation - Abstract
In this chapter we study the regular solutions of the differential equations of quantum mechanics for the free particle, the particle in different boxes, the linear harmonic oscillator, atomic and molecular one-electron systems, the hydrogen atom in a static electric field, and the Stark effect for the hydrogen atom. Through introduction of appropriate separation constants, the partial differential equations resulting for these physical systems are first separated into ordinary one-dimensional differential equations which are then solved by a series expansion in powers of the variable, after the singular points arising in the interval of definition of each variable have been removed by the technique of indicial equations or by studying their asymptotic expansion. The solutions found in this way are then verified by direct substitution of the resulting functions into the original differential equations.
- Published
- 2013
- Full Text
- View/download PDF
45. Atomic and molecular interactions
- Author
-
Valerio Magnasco
- Subjects
Physics ,Molecular interactions ,Chemistry ,Intermolecular force ,Perturbation (astronomy) ,Interatomic potential ,Superposition principle ,symbols.namesake ,Fourier transform ,Pauli exclusion principle ,Chemical physics ,Quantum mechanics ,Intermolecular potential ,symbols ,Molecule ,Atomic physics ,van der Waals force ,Basis set - Abstract
Publisher Summary Calculation of the intermolecular energies from the energy of the whole system A + B, from which subtraction of the energies of the separate molecules is done, meets the enormous difficulties, even at the simplest level. The various difficulties are caused by errors due to: truncation of the basis set, lack of correlation if each molecule is described at the Hartree–Fock level, and basis set superposition. Thus treating the interaction between two molecules as a small perturbation extends the Rayleigh–Schroedinger (RS) perturbation theory to include the exchange and overlap effects in the first order. This chapter discusses the elementary RS perturbation theory by considering the first-order perturbation for the interatomic potential V of the H–H+ and H–H interactions. The chapter also reviews the elements of Murrell–Shaw–Musher–Amos perturbation theory for the interaction among molecules so as to investigate the physical nature of the interaction up to the second order in the intermolecular potential V.
- Published
- 2013
- Full Text
- View/download PDF
46. Dipole polarizabilities and C6 dispersion coefficients for small atomic and molecular systems
- Author
-
Massimo Ottonelli and Valerio Magnasco
- Subjects
Dipole ,Chemistry ,Dispersion (optics) ,Atoms in molecules ,Physics::Atomic and Molecular Clusters ,Ab initio ,General Physics and Astronomy ,Physics::Atomic Physics ,Physics::Chemical Physics ,Physical and Theoretical Chemistry ,Molecular systems ,Atomic physics ,Decomposition - Abstract
An accurate evaluation of C 6 dispersion coefficients for long-range interactions involving H, He, H 2 + and H 2 has been performed using the London formula in terms of ab initio pseudostate decomposition of the static dipole polarizabilities of the individual atoms and molecules.
- Published
- 1996
- Full Text
- View/download PDF
47. Actin filaments on myosin beds: The velocity distribution
- Author
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D. A. Winkelmann, Laurent Bourdieu, Marcelo O. Magnasco, and Albert Libchaber
- Subjects
Distribution (number theory) ,Chemistry ,Myosin ,Biophysics ,Microfilament ,Actin - Published
- 1995
- Full Text
- View/download PDF
48. Lebeda—Schrader perturbation calculations on H2
- Author
-
Valerio Magnasco, Giuseppe Figari, and Andrea Siciliano
- Subjects
Chemistry ,Excited state ,Hydrogen molecule ,General Physics and Astronomy ,Perturbation (astronomy) ,Physical and Theoretical Chemistry ,Atomic physics ,Prolate spheroidal coordinates ,Diatomic molecule ,Basis set ,Mathematical physics - Abstract
Lebeda—Schrader perturbation calculations are performed for ground and excited states of H2 using an Inui ψ0. The first-order function is expanded in a two-centre basis set of linear pseudostates involving powers of spheroidal coordinates and explicitly including the interelectronic distance. Third-order results give errors well below 1% with respect to the corresponding variational values.
- Published
- 1994
- Full Text
- View/download PDF
49. On the damped multipole expansion of the induction energy in H+2
- Author
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Camilla Costa, Andrea Siciliano, Giuseppe Figari, and Valerio Magnasco
- Subjects
Cusp (singularity) ,Chemistry ,Biophysics ,Interaction energy ,Function (mathematics) ,Condensed Matter Physics ,Diatomic molecule ,symbols.namesake ,Position (vector) ,Computational chemistry ,Quantum electrodynamics ,Taylor series ,symbols ,Physical and Theoretical Chemistry ,Wave function ,Multipole expansion ,Molecular Biology - Abstract
Following early work by Kutzelnigg on the correlation cusp, we have attempted to improve convergence of the damped multipole expansion of the second-order induction energy for H+ + by including a separately determined cusp correction of the form φ = f(r B)ψ0 into the first-order function in order to avoid divergency at the proton position when r B = 0. Three different cusp wavefunctions, all derived from the Taylor expansion of f(r B) into positive powers of r B have been examined, and the best compromise between simplicity and accuracy is found for the function φ = -r Bψ0. Few residual multipoles, variationally approximated in terms of one-centre linear pseudostates, are then found necessary to reproduce accurately the induction energy at the distance of the chemical bond.
- Published
- 1994
- Full Text
- View/download PDF
50. Variationally improving the Inui wavefunction for H2
- Author
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Valerio Magnasco, Giuseppe Figari, and Andrea Siciliano
- Subjects
symbols.namesake ,Chemistry ,Excited state ,Hydrogen molecule ,symbols ,General Physics and Astronomy ,Physical and Theoretical Chemistry ,Atomic physics ,van der Waals force ,Prolate spheroidal coordinates ,Wave function ,Diatomic molecule - Abstract
The two-parameter Inui wavefunction for the ground and excited states of H 2 is improved variationally through an expansion in powers of confocal spheroidal coordinates including the interelectronic distance. A single 69-term expansion gives, for both states, fairly accurate interaction energies in the region of the chemical and van der Waals bond.
- Published
- 1993
- Full Text
- View/download PDF
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