752 results on '"L. Holmes"'
Search Results
2. Discovery of AZD4573, a Potent and Selective Inhibitor of CDK9 That Enables Short Duration of Target Engagement for the Treatment of Hematological Malignancies
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Tieguang Yao, Liangwei Wu, Craig S. Donald, Douglas Ferguson, Lei Wang, Andrew Pike, Jianyan Wang, Justin Cidado, Dedong Wu, Kurt Gordon Pike, Kumar Thakur, Chungang Gu, Calum Cook, James Horstick, Tyler Grebe, Theresa Proia, Darren Stead, Alexander Hird, Michelle Lamb, Wenlin Shao, Nichole O'Connell, Yun Jiang, Sudhir M. Hande, Bin Yang, Janet Hawkins, Barlaam Bernard Christophe, Neil Sumner, Melissa Vasbinder, Andrew D. Ferguson, Jane E. Moore, Jeffrey G. Varnes, Bryan Roberts, Maryann San Martin, Lisa Drew, Ujjal Sarkar, Allan Dishington, Chris De Savi, Robert Casella, Steve C. Glossop, Jane L. Holmes, and Thomas M. McGuire
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Pyridines ,Drug Evaluation, Preclinical ,Apoptosis ,Pharmacology ,01 natural sciences ,Mice ,Structure-Activity Relationship ,03 medical and health sciences ,Dogs ,Pharmacokinetics ,Cell Line, Tumor ,Drug Discovery ,Animals ,Humans ,Structure–activity relationship ,Potency ,Protein Kinase Inhibitors ,030304 developmental biology ,0303 health sciences ,Binding Sites ,Chemistry ,Cyclin-Dependent Kinase 9 ,Xenograft Model Antitumor Assays ,Effective dose (pharmacology) ,Rats ,0104 chemical sciences ,Molecular Docking Simulation ,Clinical trial ,010404 medicinal & biomolecular chemistry ,Solubility ,Cell culture ,Hematologic Neoplasms ,Cancer cell ,Myeloid Cell Leukemia Sequence 1 Protein ,Molecular Medicine ,Half-Life - Abstract
A CDK9 inhibitor having short target engagement would enable a reduction of Mcl-1 activity, resulting in apoptosis in cancer cells dependent on Mcl-1 for survival. We report the optimization of a series of amidopyridines (from compound 2), focusing on properties suitable for achieving short target engagement after intravenous administration. By increasing potency and human metabolic clearance, we identified compound 24, a potent and selective CDK9 inhibitor with suitable predicted human pharmacokinetic properties to deliver transient inhibition of CDK9. Furthermore, the solubility of 24 was considered adequate to allow i.v. formulation at the anticipated effective dose. Short-term treatment with compound 24 led to a rapid dose- and time-dependent decrease of pSer2-RNAP2 and Mcl-1, resulting in cell apoptosis in multiple hematological cancer cell lines. Intermittent dosing of compound 24 demonstrated efficacy in xenograft models derived from multiple hematological tumors. Compound 24 is currently in clinical trials for the treatment of hematological malignancies.
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- 2020
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3. Complementarity in Cyclotricatechylene Assemblies: Symmetric Cages Linked within 3D Cubic Hydrogen Bonded Networks
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Brendan F. Abrahams, Keith F. White, Timothy A. Hudson, Steven M. Russell, and Jessica L. Holmes
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Crystallographic point group ,Hydrogen ,Hydrogen bond ,chemistry.chemical_element ,General Medicine ,hydrogen bonding ,Alkali metal ,Crystal engineering ,Crystal ,Crystallography ,Octahedron ,chemistry ,crystal engineering ,cyclotricatechylene ,Molecule ,complementarity - Abstract
A serendipitous discovery has led to the generation of a family of four compounds in which six components combine to form symmetric metal-cyclotricatechylene (H6ctc) cages. The four compounds, which have the compositions, [Cs((CH3)2CO)6][K4(H6ctc)4(H2O)8][Cs4(H2O)6](PO4)3, [Rb((CH3)2CO)6][Rb2K2(H6ctc)4(H2O)6][Rb4(H2O)6](PO4)3, [Cs((CH3)2CO)6][K4(H6ctc)4(H2O)8]-[Cs(H2O)9](SO4)3 and [Rb((CH3)2CO)6][Rb2K2(H6ctc)4(H2O)6][Rb(H2O)9](SO4)3 possess cubic symmetry that arises from the complementary interactions that govern the assembly of the components. The cage cavities contain water molecules and either one or four large alkali metal ions (either Rb+ or Cs+) which interact with the internal aromatic surfaces of the cage. Each cage is linked to six tetrahedral anions (PO43&minus, or SO42&minus, ) through 24 equivalent hydrogen bonds and each anion bridges a pair of cages through eight such hydrogen bonds. An unusual octahedral complex M((CH3)2CO)6+ (M = Rb or Cs), in which the M-C=O link is linear, appears to be a key structural component. A feature of this family of crystalline compounds is the presence of a range of complementary interactions which combine to generate materials that exhibit high crystallographic symmetry.
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- 2020
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4. The Effect of Sterically Active Ligand Substituents on Gas Adsorption within a Family of 3D Zn-Based Coordination Polymers
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Forbes McGain, Helen E. Maynard-Casely, Timothy A. Hudson, Richard Robson, Jessica L. Holmes, A. David Dharma, Keith F. White, Ravichandar Babarao, and Brendan F. Abrahams
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Inorganic Chemistry ,chemistry.chemical_classification ,Steric effects ,Molecular dynamics ,Crystallography ,Adsorption ,chemistry ,Ligand ,Molecule ,Metal-organic framework ,Sorption ,Polymer ,Physical and Theoretical Chemistry - Abstract
An investigation of the adsorption properties of two structurally related, 3D coordination polymers of composition Zn(2-Mehba) and Zn(2,6-Me2hba) (2-Mehba = the dianion of 2-methyl-4-hydroxybenzoic acid and 2,6-Me2hba = the dianion of 2,6-dimethyl-4-hydroxybenzoic acid) is presented. A common feature of these structures are parallel channels that are able to accommodate appropriately sized guest molecules. The structures differ with respect to the steric congestion within the channels arising from methyl groups appended to the bridging ligands of the network. The host network, Zn(2-Mehba), is able to take up appreciable quantities of H2 (77 K) and CO2 and CH4 (298 K) in a reversible manner. In regard to the adsorption of N2 by Zn(2-Mehba), there appears to be an unusual temperature dependence for the uptake of the gas such that when the temperature is increased from 77 to 298 K the uptake of N2 increases. The relatively narrow channels of Zn(2,6-Me2hba) are too small to allow the uptake of N2 and CH4, but H2 molecules can be adsorbed. A pronounced step at elevated pressures in CO2 and N2O isotherms for Zn(2,6-Me2hba) is noted. Calculations indicate that rotation of phenolate rings leads to a change in the available intraframework space during CO2 dosing.
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- 2020
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5. Discovery of a Series of 7-Azaindoles as Potent and Highly Selective CDK9 Inhibitors for Transient Target Engagement
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Lei Wang, Allan Dishington, Jane E. Moore, Kurt Gordon Pike, Wenlin Shao, Andrew Lister, Anil Patel, Lorraine A. Hassall, Sudhir M. Hande, Jane L. Holmes, Douglas Ferguson, Thomas M. McGuire, Jeffrey G. Varnes, Lin Xue, Chungang Gu, Tieguang Yao, Barlaam Bernard Christophe, Lisa Drew, Janet Hawkins, Liangwei Wu, Chris De Savi, Melissa Vasbinder, Andrew D. Ferguson, Darren Stead, Ujjal Sarkar, Michelle Lamb, Nichole O'Connell, Bin Yang, and Alexander Hird
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Indoles ,Dose-Response Relationship, Drug ,Molecular Structure ,Chemistry ,Target engagement ,Pharmacology ,Highly selective ,Cyclin-Dependent Kinase 9 ,Structure-Activity Relationship ,In vivo ,Drug Discovery ,Molecular Medicine ,Humans ,Cyclin-dependent kinase 9 ,Protein Kinase Inhibitors - Abstract
Optimization of a series of azabenzimidazoles identified from screening hit 2 and the information gained from a co-crystal structure of the azabenzimidazole-based lead 6 bound to CDK9 led to the discovery of azaindoles as highly potent and selective CDK9 inhibitors. With the goal of discovering a highly selective and potent CDK9 inhibitor administrated intravenously that would enable transient target engagement of CDK9 for the treatment of hematological malignancies, further optimization focusing on physicochemical and pharmacokinetic properties led to azaindoles 38 and 39. These compounds are highly potent and selective CDK9 inhibitors having short half-lives in rodents, suitable physical properties for intravenous administration, and the potential to achieve profound but transient inhibition of CDK9 in vivo.
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- 2021
6. Electrogenic sodium bicarbonate cotransporter NBCe1 regulates pancreatic β cell function in type 2 diabetes
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Michael F. Romero, Y. S. Prakash, Satish Sen, Gary E. Shull, Matthew R. Brown, Alison A. Stiller, Aleksey V. Matveyenko, Heather L. Holmes, Naureen Javeed, Kuntol Rakshit, and Tracy K. Her
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Intracellular pH ,medicine.medical_treatment ,Cell ,Regulator ,Gene Expression ,Diet, High-Fat ,Mice ,Stress, Physiological ,Insulin-Secreting Cells ,Glucose Intolerance ,medicine ,Animals ,Humans ,Glucose homeostasis ,Obesity ,Gene ,Mice, Knockout ,biology ,Chemistry ,Sodium-Bicarbonate Symporters ,Insulin ,General Medicine ,Mitochondria ,Cell biology ,Disease Models, Animal ,medicine.anatomical_structure ,Diabetes Mellitus, Type 2 ,biology.protein ,Cotransporter ,SLC4A4 ,Research Article - Abstract
Pancreatic β cell failure in type 2 diabetes mellitus (T2DM) is attributed to perturbations of the β cell’s transcriptional landscape resulting in impaired glucose-stimulated insulin secretion. Recent studies identified SLC4A4 (a gene encoding an electrogenic Na(+)-coupled HCO(3)(–) cotransporter and intracellular pH regulator, NBCe1) as one of the misexpressed genes in β cells of patients with T2DM. Thus, in the current study, we set out to test the hypothesis that misexpression of SLC4A4/NBCe1 in T2DM β cells contributes to β cell dysfunction and impaired glucose homeostasis. To address this hypothesis, we first confirmed induction of SLC4A4/NBCe1 expression in β cells of patients with T2DM and demonstrated that its expression was associated with loss of β cell transcriptional identity, intracellular alkalinization, and β cell dysfunction. In addition, we generated a β cell–selective Slc4a4/NBCe1-KO mouse model and found that these mice were protected from diet-induced metabolic stress and β cell dysfunction. Importantly, improved glucose tolerance and enhanced β cell function in Slc4a4/NBCe1-deficient mice were due to augmented mitochondrial function and increased expression of genes regulating β cell identity and function. These results suggest that increased β cell expression of SLC4A4/NBCe1 in T2DM plays a contributory role in promotion of β cell failure and should be considered as a potential therapeutic target.
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- 2021
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7. Hypercalcemia Without Hypervitaminosis D During Cholecalciferol Supplementation in Critically Ill Patients
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George O. Maish, Martin A. Croce, Roland N. Dickerson, Gayle Minard, and Whitney L. Holmes
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Adult ,Male ,medicine.medical_specialty ,Hypercalcaemia ,030309 nutrition & dietetics ,Critical Illness ,Medicine (miscellaneous) ,Gastroenterology ,vitamin D deficiency ,Young Adult ,03 medical and health sciences ,chemistry.chemical_compound ,Enteral Nutrition ,0302 clinical medicine ,Blood serum ,Risk Factors ,Intensive care ,Internal medicine ,medicine ,Vitamin D and neurology ,Humans ,Vitamin D ,Cholecalciferol ,0303 health sciences ,Nutrition and Dietetics ,Dose-Response Relationship, Drug ,business.industry ,Incidence ,Vitamins ,Middle Aged ,Vitamin D Deficiency ,Hypervitaminosis ,medicine.disease ,Hypervitaminosis D ,Intensive Care Units ,chemistry ,Hypercalcemia ,Wounds and Injuries ,Calcium ,Female ,030211 gastroenterology & hepatology ,business - Abstract
Vitamin D deficiency during critical illness has been associated with worsened outcomes. Because most critically ill patients with severe traumatic injuries are vitamin D deficient, we investigated the efficacy and safety of cholecalciferol therapy for these patients.Fifty-three patients (17 years of age) admitted to the trauma intensive care unit who had a serum 25-hydroxy vitamin D (25-OH vit D) concentration20 ng/mL were given 10,000 IU of cholecalciferol daily. Efficacy was defined as achievement of a 25-OH vit D of 30-79.9 ng/mL. Safety was evaluated by the presence of hypercalcemia (serum ionized calcium [iCa]1.32 mmol/L) or hypervitaminosis D (25-OH vit D79.9 nmol/L). Patients were monitored for 2 weeks during cholecalciferol therapy.Twenty-four patients (45%) achieved target 25-OH vit D. No patients experienced hypervitaminosis D. Hypercalcemia occurred in 40% (n = 21) of patients; 2 patients experienced an iCa1.49 nmol/L. 25-OH vit D was significantly greater for those who developed hypercalcemia (37.2 + 11.2 vs 28.4 + 5.6 ng/mL, respectively, P0.001) by the second week of cholecalciferol. Of 24 patients who achieved target 25-OH vit D, 14 (58%) experienced hypercalcemia in contrast to 24% of patients (7 out of 29) who did not achieve target 25-OH vit D (P = 0.024).Cholecalciferol normalized serum 25-OH vit D concentrations in less than half of patients yet was associated with a substantial proportion of patients with hypercalcemia without hypervitaminosis D.
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- 2019
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8. Halogen-Induced Crystallinity and Size Tuning of Microwave Synthesized Germanium Nanocrystals
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Sue A. Carter, Roy Sfadia, Elayaraja Muthuswamy, Susan M. Kauzlarich, Kathryn A. Newton, Alexandra L. Holmes, and Katayoon Tabatabaei
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Materials science ,General Chemical Engineering ,Halide ,chemistry.chemical_element ,Germanium ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Reduction (complexity) ,Crystallinity ,chemistry.chemical_compound ,chemistry ,Nanocrystal ,Chemical engineering ,Oleylamine ,Halogen ,Materials Chemistry ,0210 nano-technology - Abstract
The reduction of Ge halides in oleylamine (OAm) provides a simple, yet effective high-yield synthetic route to germanium nanocrystals (NCs). Significant advances based on this approach include size...
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- 2019
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9. Mecamylamine inhibits seizure-like activity in CA1-CA3 hippocampus through antagonism to nicotinic receptors
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Oleksandr Maximyuk, Oleg Krishtal, Artur Romanov, D.S. Isaev, Murat Oz, Gregory L. Holmes, O Netsyk, and Olha Zapukhliak
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Nicotinic Acetylcholine Receptors ,Patch-Clamp Techniques ,Nicotinic Antagonists ,Hippocampal formation ,Mecamylamine ,Receptors, Nicotinic ,Hippocampus ,Biochemistry ,Synaptic Transmission ,GABA Antagonists ,Animal Cells ,Muscarinic acetylcholine receptor ,Medicine and Health Sciences ,Membrane Electrophysiology ,Neurons ,Multidisciplinary ,Chemistry ,musculoskeletal, neural, and ocular physiology ,Pyramidal Cells ,Glutamate receptor ,Brain ,Neurochemistry ,Neurotransmitters ,CA3 Region, Hippocampal ,Nicotinic agonist ,Bioassays and Physiological Analysis ,Medicine ,Anatomy ,Cellular Types ,medicine.drug ,Research Article ,Signal Transduction ,Ganglion Cells ,Transmembrane Receptors ,Science ,Cholinergics ,AMPA receptor ,In Vitro Techniques ,Research and Analysis Methods ,Bicuculline ,gamma-Aminobutyric acid ,Seizures ,medicine ,Animals ,Rats, Wistar ,CA1 Region, Hippocampal ,Electrophysiological Techniques ,Biology and Life Sciences ,Proteins ,Cell Biology ,GABA receptor antagonist ,Gamma-Aminobutyric Acid ,Rats ,nervous system ,Acetylcholine Receptors ,Cellular Neuroscience ,Cholinergic ,Muscarinic Acetylcholine Receptors ,Neuroscience ,Patch Clamp Techniques ,Excitatory Amino Acid Antagonists - Abstract
Cholinergic modulation of hippocampal network function is implicated in multiple behavioral and cognitive states. Activation of nicotinic and muscarinic acetylcholine receptors affects neuronal excitability, synaptic transmission and rhythmic oscillations in the hippocampus. In this work, we study the ability of the cholinergic system to sustain hippocampal epileptiform activity independently from glutamate and GABA transmission. Simultaneous CA3 and CA1 field potential recordings were obtained during the perfusion of hippocampal slices with the aCSF containing AMPA, NMDA and GABA receptor antagonists. Under these conditions, recurrent field discharges synchronous between CA3 and CA1 were recorded. Field discharges were blocked by addition of calcium-channel blocker Cd2+ and disappeared in CA1 after a surgical cut between CA3 and CA1. Cholinergic antagonist mecamylamine abolished CA3-CA1 synchronous field discharges, while antagonists of α7 and α4β2 nAChRs – MLA and DhβE had no effect. Our results suggest that activation of nicotinic acetylcholine receptors is able to sustain CA3-CA1 synchronous epileptiform activity independently from AMPA NMDA and GABA transmission. In addition, mecamylamine but not α7 and α4β2 nAChRs antagonists reduce bicuculline-induced seizure-like activity. The ability of mecamylamine to decrease hippocampal network synchronization might be associated with its therapeutic effects in a wide variety of CNS disorders including addiction, depression and anxiety.
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- 2021
10. High Ethylene and Propylene in an Area Dominated by Oil Production
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Trevor O'Neil, Trang Tran, Makenzie L. Holmes, Seth N. Lyman, and Huy N.Q. Tran
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Pollution ,Atmospheric Science ,Ozone ,010504 meteorology & atmospheric sciences ,Artificial lift ,media_common.quotation_subject ,health care facilities, manpower, and services ,lcsh:QC851-999 ,010501 environmental sciences ,Environmental Science (miscellaneous) ,Structural basin ,Spatial distribution ,01 natural sciences ,Organic compound ,chemistry.chemical_compound ,health care economics and organizations ,0105 earth and related environmental sciences ,media_common ,oil and gas ,chemistry.chemical_classification ,alkenes ,business.industry ,engine ,Fossil fuel ,emissions ,artificial lift ,stomatognathic diseases ,chemistry ,Acetylene ,Environmental chemistry ,Environmental science ,population characteristics ,lcsh:Meteorology. Climatology ,business ,geographic locations - Abstract
We measured the spatial distribution and composition of ozone-forming hydrocarbons, alcohols, and carbonyls in Utah&rsquo, s Uinta Basin during the winter months of 2019 and 2020. The Uinta Basin contains about 10,000 producing oil and gas wells. Snow cover and the region&rsquo, s unique topography (i.e., a large basin entirely surrounded by mountains) promote strong, multi-day temperature inversion episodes that concentrate pollution and lead to wintertime ozone production. Indeed, organic compound concentrations were about eight times higher during inversion episodes than during snow-free springtime conditions. We examined spatial associations between wintertime concentrations of organics and oil and gas sources in the region, and we found that concentrations of highly reactive alkenes were higher in areas with dense oil production than in areas with dense gas production. Total alkene+acetylene concentrations were 267 (42, 1146, lower and upper 95% confidence limits) µ, g m&minus, 3 at locations with 340 or more producing oil wells within 10 km (i.e., 75th percentile) versus 12 (9, 23) µ, 3 at locations with 15 or fewer oil wells (i.e., 25th percentile). Twenty-eight percent of the potential for organic compounds to produce ozone was due to alkenes in areas with dense oil production. Spatial correlations and organic compound ratios indicated that the most likely source of excess alkenes in oil-producing areas was natural gas-fueled engines, especially lean-burning (i.e., high air:fuel ratio) artificial lift engines.
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- 2020
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11. The Identification of Potent, Selective, and Orally Available Inhibitors of Ataxia Telangiectasia Mutated (ATM) Kinase: The Discovery of AZD0156 (8-{6-[3-(Dimethylamino)propoxy]pyridin-3-yl}-3-methyl-1-(tetrahydro-2H-pyran-4-yl)-1,3-dihydro-2H-imidazo[4,5-c]quinolin-2-one)
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Camila de-Almeida, Keith R. Mulholland, Kang Zhao, Barlaam Bernard Christophe, Gilles Ouvry, Gareth Hughes, Martin Pass, Elaine Cadogan, Zhenhua Wang, Andrew D. Campbell, Nidal Al-Huniti, Natalie Stratton, Sébastien L. Degorce, Joanne Wilson, Myriam Didelot, Philip A. MacFaul, Stephen T. Durant, Richard Ducray, Baochang Zhai, Kurt Gordon Pike, Lorraine A. Hassall, Jane L. Holmes, Thomas M. McGuire, Nichola L. Davies, Allan Dishington, Yingxue Chen, Nicola Colclough, and Graeme R. Robb
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Models, Molecular ,0301 basic medicine ,Protein Conformation ,Pyridines ,Administration, Oral ,Biological Availability ,Ataxia Telangiectasia Mutated Proteins ,Quinolones ,Pharmacology ,Substrate Specificity ,Olaparib ,Inhibitory Concentration 50 ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Pharmacokinetics ,Drug Discovery ,medicine ,Humans ,Structure–activity relationship ,Potency ,Protein Kinase Inhibitors ,Volume of distribution ,Chemistry ,Atm kinase ,Irinotecan ,030104 developmental biology ,Pyran ,Drug Design ,030220 oncology & carcinogenesis ,Quinolines ,Molecular Medicine ,medicine.drug - Abstract
ATM inhibitors, such as 7, have demonstrated the antitumor potential of ATM inhibition when combined with DNA double-strand break-inducing agents in mouse xenograft models. However, the properties of 7 result in a relatively high predicted clinically efficacious dose. In an attempt to minimize attrition during clinical development, we sought to identify ATM inhibitors with a low predicted clinical dose (50 mg) and focused on strategies to increase both ATM potency and predicted human pharmacokinetic half-life (predominantly through the increase of volume of distribution). These efforts resulted in the discovery of 64 (AZD0156), an exceptionally potent and selective inhibitor of ATM based on an imidazo[4,5- c]quinolin-2-one core. 64 has good preclinical phamacokinetics, a low predicted clinical dose, and a high maximum absorbable dose. 64 has been shown to potentiate the efficacy of the approved drugs irinotecan and olaparib in disease relevant mouse models and is currently undergoing clinical evaluation with these agents.
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- 2018
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12. Proton affinities and ion enthalpies
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Nick A. van Huizen, Peter C. Burgers, John L. Holmes, Surgery, and Neurology
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chemistry.chemical_classification ,Proton ,010401 analytical chemistry ,Protonation ,General Medicine ,010402 general chemistry ,01 natural sciences ,Affinities ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Ion ,Crystallography ,chemistry ,Proton affinity ,Lone pair ,Spectroscopy ,Alkyl ,Gas-phase ion chemistry - Abstract
Proton affinities of a number of alkyl acetates (CH3–C(=O)–OR) and of methyl alkanoates (R–C(=O)–OCH3, R=H, alkyl) have been assembled from the literature or measured using the kinetic method. It was observed that the proton affinities for the isomeric species CH3–C(=O)–OR and R–C(=O)–OCH3 are almost identical, an unexpected result as the charge in these protonated ester molecules is largely at the keto carbon atom and so this site should be more sensitive to alkyl substitution. Analysis of the data, including those from lone pair ionisation and core-electron ionisation experiments available from the literature, indicate that after protonation, extensive charge relaxation (or polarisation) takes place (as is also the case, according to the literature, after core-electron ionisation). By contrast, after lone pair ionisation, which results in radical cations, such relaxation processes are relatively less extensive. As a consequence, changes in ion enthalpies of these protonated molecules follow more closely the changes in neutral enthalpies, compared with changes in enthalpies of the corresponding radical cations, formed by electron detachment. Preliminary analyses of published energetic data indicate that the above finding for organic esters may well be another example of a more general phenomenon.
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- 2017
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13. Specialized stellate cells offer a privileged route for rapid water flux in Drosophila renal tubule
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Anthony J. Dornan, Heather L. Holmes, Shireen A. Davies, Michael F. Romero, Selim Terhzaz, Julian A. T. Dow, Daniel R. Turin, Saurav Ghimire, and Pablo Cabrero
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Male ,Cell Membrane Permeability ,Physiology ,Xenopus ,Aquaporin ,Malpighian Tubules ,Aquaporins ,03 medical and health sciences ,0302 clinical medicine ,Osmoregulation ,Chlorides ,medicine ,Animals ,Drosophila Proteins ,Secretion ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Water transport ,biology ,Chemistry ,fungi ,Water ,Biological Transport ,Biological Sciences ,biology.organism_classification ,Malpighian tubule ,Epithelium ,Cell biology ,aquaporin ,Aquaglyceroporins ,Tubule ,medicine.anatomical_structure ,Drosophila melanogaster ,Kidney Tubules ,stellate cell ,Gene Knockdown Techniques ,Models, Animal ,Hepatic stellate cell ,Oocytes ,Female ,Xenopus oocyte ,030217 neurology & neurosurgery - Abstract
Significance The tiny insect renal (Malpighian) tubule can transport fluid at unparalleled speed, suggesting unique specializations. Here we show that strategic allocation of major intrinsic proteins (MIPs) to specific cells within the tubule allows the separation of metabolically intense active cation transport from passive chloride and water conductance. This specialized renal architecture is general to at least many higher insects, providing a clue to the unique success of the class Insecta in colonizing an extraordinary range of ecological niches., Insects are highly successful, in part through an excellent ability to osmoregulate. The renal (Malpighian) tubules can secrete fluid faster on a per-cell basis than any other epithelium, but the route for these remarkable water fluxes has not been established. In Drosophila melanogaster, we show that 4 genes of the major intrinsic protein family are expressed at a very high level in the fly renal tissue: the aquaporins (AQPs) Drip and Prip and the aquaglyceroporins Eglp2 and Eglp4. As predicted from their structure, and by their transport function by expressing these proteins in Xenopus oocytes, Drip, Prip, and Eglp2 show significant and specific water permeability, whereas Eglp2 and Eglp4 show very high permeability to glycerol and urea. Knockdowns of any of these genes result in impaired hormone-induced fluid secretion. The Drosophila tubule has 2 main secretory cell types: active cation-transporting principal cells, wherein the aquaglyceroporins localize to opposite plasma membranes, and small stellate cells, the site of the chloride shunt conductance, with these AQPs localizing to opposite plasma membranes. This suggests a model in which osmotically obliged water flows through the stellate cells. Consistent with this model, fluorescently labeled dextran, an in vivo marker of membrane water permeability, is trapped in the basal infoldings of the stellate cells after kinin diuretic peptide stimulation, confirming that these cells provide the major route for transepithelial water flux. The spatial segregation of these components of epithelial water transport may help to explain the unique success of the higher insects in regulating their internal environments.
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- 2020
14. One electron less or one proton more: how do they differ?
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John L. Holmes, Nick A. van Huizen, Peter C. Burgers, and Neurology
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010405 organic chemistry ,Chemistry ,010401 analytical chemistry ,proton affinity ,Special Issue ‐ Research Article ,Ionic bonding ,Special Issue ‐ Research Articles ,Hydrogen atom ,hydrogen atom affinity ,ionisation energy ,01 natural sciences ,Heterolysis ,0104 chemical sciences ,Homolysis ,Crystallography ,protonated molecules ,Proton affinity ,Molecule ,gas‐phase ion chemistry ,Bond energy ,Spectroscopy ,Gas-phase ion chemistry - Abstract
From the NIST website and the literature, we have collected the Ionisation Energies (IE) of 3,052 and the Proton Affinities (PA) of 1,670 compounds. For 614 of these, both the IE and PA are known; this enables a study of the relationships between these quantities for a wide variety of molecules. From the IE and PA values, the hydrogen atom affinities (HA) of molecular ions M•+ may also be assessed. The PA may be equated to the heterolytic bond energy of [MH]+ and HA to the homolytic bond energy. Plots of PA versus IE for these substances show (in agreement with earlier studies) that, for many families of molecules, the slope of the ensuing line is less negative than −1, i.e. changes in the PA are significantly less than the concomitant opposite changes in IE. At one extreme (high PA, low IE) are the metals, their oxides and hydroxides, which show a slope of close to −1, at the other extreme (low PA, high IE) are the hydrogen halides, methyl halides and noble gases, which show a slope of ca. −0.3; other molecular categories show intermediate behaviour. One consequence of a slope less negative than −1 is that the changes in ionic enthalpies of the protonated species more closely follow the changes in the enthalpies of the neutral molecules compared with changes in the ion enthalpies of the corresponding radical cations. This is consistent with findings from ab initio calculations from the literature that the incoming proton, once attached to the molecule, may retain a significant amount of its charge. These collected data allow a comparison of the thermodynamic stability of protonated molecules in terms of their homolytic or heterolytic bond cleavages. Protonated nitriles are particularly stable by virtue of the very large hydrogen atom affinities of their radical cations.
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- 2020
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15. Segregation of seizures and spreading depolarization across cortical layers
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Gregory L. Holmes, Roustem Khazipov, Gulshat Burkhanova, Kseniya Chernova, Andrey Zakharov, Kazan Federal University (KFU), Division of Neurology, Neuroscience Center at Dartmouth, Dartmouth Medical School (DMS), Dartmouth College [Hanover]-Dartmouth College [Hanover], Dartmouth College [Hanover], Institut de Neurobiologie de la Méditerranée [Aix-Marseille Université] (INMED - INSERM U1249), Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM), Dartmouth Medical School, and Institut National de la Santé et de la Recherche Médicale (INSERM)-Aix Marseille Université (AMU)
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0301 basic medicine ,Male ,Population ,Electroencephalography ,Article ,03 medical and health sciences ,0302 clinical medicine ,Seizures ,Cortex (anatomy) ,medicine ,Animals ,Rats, Wistar ,education ,ComputingMilieux_MISCELLANEOUS ,education.field_of_study ,medicine.diagnostic_test ,Chemistry ,[SCCO.NEUR]Cognitive science/Neuroscience ,Cortical Spreading Depression ,Flurothyl ,Depolarization ,Somatosensory Cortex ,Barrel cortex ,Current Literature in Basic Science ,Rats ,030104 developmental biology ,medicine.anatomical_structure ,Neurology ,Cortical spreading depression ,Female ,[SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC] ,Neurology (clinical) ,Nerve Net ,Neuroscience ,Cortical column ,030217 neurology & neurosurgery - Abstract
Segregation of Seizures and Spreading Depolarization Across Cortical Layers Zakharov A, Chernova K, Burkhanova G, Holmes GL, Khazipov R. Epilepsia. 2019;60(12):2386-2397. doi:10.1111/epi.16390.Objective:Cortical spreading depolarization (SD) and seizures are often co-occurring electrophysiological phenomena. However, the cross-layer dynamics of SD during seizures and the effect of SD on epileptic activity across cortical layers remain largely unknown.Methods:We explored the spatial–temporal dynamics of SD and epileptic activity across layers of the rat barrel cortex using direct current silicone probe recordings during flurothyl-induced seizures.Results:Spreading depolarization occurred in half of the flurothyl-evoked seizures. Spreading depolarization always started from the superficial layers and spread downward either through all cortical layers or stopping at the L4/L5 border. In cases without SD, seizures were characterized by synchronized population firing across all cortical layers throughout the entire seizure. However, when SD occurred, epileptic activity was transiently silenced in layers involved with SD but persisted in deeper layers. During partial SD, epileptiform activity persisted in deep layers throughout the entire seizure, with positive signals at the cortical surface reflecting passive sources of population spikes generated in deeper cortical layers. During full SD, the initial phase of SD propagation through the superficial layers was similar to partial SD, with suppression of activity at the superficial layers and segregation of seizures to deep layers. Further propagation of SD to deep layers resulted in a wave of transient suppression of epileptic activity through the entire cortical column. Thus, vertical propagation of SD through the cortical column creates dynamic network states during which epileptiform activity is restricted to layers without SD.Significance:Our results point to the importance of vertical SD spread in the SD-related depression of epileptiform activity across cortical layers.
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- 2019
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16. When two cells are better than one: specialized stellate cells provide a privileged route for uniquely rapid water flux in Drosophila renal tubule
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Shireen A. Davies, Anthony J. Dornan, Heather L. Holmes, Saurav Ghimire, Pablo Cabrero, Michael F. Romero, Daniel R. Turin, Julian A. T. Dow, and Selim Terhzaz
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0303 health sciences ,Water transport ,Chemistry ,Major intrinsic proteins ,Aquaporin ,Epithelium ,Cell biology ,03 medical and health sciences ,0302 clinical medicine ,Tubule ,medicine.anatomical_structure ,Aquaglyceroporins ,medicine ,Hepatic stellate cell ,030217 neurology & neurosurgery ,Cation transport ,030304 developmental biology - Abstract
Insects are highly successful, in part through an excellent ability to osmoregulate. The renal (Malpighian) tubules can secrete fluid faster on a per-cell basis than any other epithelium, but the route for these remarkable water fluxes has not been established. InDrosophila melanogaster, we show that 4 members of the Major Intrinsic Protein family are expressed at very high level in the fly renal tissue; the aquaporins Drip and Prip, and the aquaglyceroporins Eglp2 and Eglp4. As predicted from their structure and by their transport function by expressing these proteins inXenopusoocytes, Drip, Prip and Eglp2 show significant and specific water permeability, whereas Eglp2 and Eglp4 show very high permeability to glycerol and urea. Knockdowns of any of these genes impacts tubule performance resulting in impaired hormone-induced fluid secretion. TheDrosophilatubule has two main secretory cell types: active cation-transporting principal cells with the aquaglyceroporins localize to opposite plasma membranes and small stellate cells, the site of the chloride shunt conductance, with these aquaporins localising to opposite plasma membranes. This suggests a model in which cations are pumped by the principal cells, causing chloride to follow through the stellate cells in order to balance the charge. As a consequence, osmotically obliged water follows through the stellate cells. Consistent with this model, fluorescently labelled dextran, anin vivomarker of membrane water permeability, is trapped in the basal infoldings of the stellate cells after kinin diuretic peptide stimulation, confirming that these cells provide the major route for transepithelial water flux. The spatial segregation of these components of epithelial water transport may help to explain the unique success of the higher insects.Significance statementThe tiny insect renal (Malpighian) tubule can transport fluid at unparalleled speed, suggesting unique specialisations. Here we show that strategic allocation of Major Intrinsic Proteins (MIPs) to specific cells within the polarized tubule allow the separation of metabolically intense active cation transport from chloride and water conductance. This body plan is general to at least many higher insects, providing a clue to the unique success of the class Insecta.
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- 2019
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17. STAT1 Gain-of-Function Mutations Cause High Total STAT1 Levels With Normal Dephosphorylation
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Alexandra F. Freeman, Christa S. Zerbe, Kevin L. Holmes, Amy P. Hsu, Ofer Zimmerman, Li Ding, Lindsey B. Rosen, David A. Stephany, Elizabeth P. Sampaio, Steven M. Holland, Sergio D. Rosenzweig, Peter Olbrich, Hye Sun Kuehn, and Gulbu Uzel
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0301 basic medicine ,Male ,gain of function ,chemistry.chemical_compound ,0302 clinical medicine ,STAT1 ,Immunology and Allergy ,Phosphorylation ,Child ,Cells, Cultured ,Original Research ,biology ,Middle Aged ,Up-Regulation ,STAT1 Transcription Factor ,Child, Preschool ,Gain of Function Mutation ,Female ,monocytes ,Adult ,lcsh:Immunologic diseases. Allergy ,medicine.medical_specialty ,Adolescent ,CD14 ,mRNA ,Immunology ,T cells ,Cycloheximide ,Protein degradation ,Peripheral blood mononuclear cell ,Autoimmune Diseases ,Dephosphorylation ,03 medical and health sciences ,Young Adult ,Internal medicine ,medicine ,Humans ,JAK inhibitors ,dephosphorylation ,030104 developmental biology ,Endocrinology ,chemistry ,Mycoses ,Proteolysis ,STAT protein ,biology.protein ,Leukocytes, Mononuclear ,lcsh:RC581-607 ,protein ,030215 immunology - Abstract
Signal transducer and activator of transcription (STAT1)1 gain of function (GOF) pathogenic variants have been associated with increased levels of phosphorylated STAT1 and STAT1-dependent cellular responses. Delayed dephosphorylation was proposed as the underlying mechanism leading to the characteristically raised pSTAT1 levels. We examined the levels of STAT1 protein and message as well as rates of STAT1 phosphorylation, dephosphorylation, and degradation associated with STAT1 GOF pathogenic variants. Fresh peripheral blood mononuclear cells (PBMC) from 14 STAT1 GOF patients carrying 10 different pathogenic variants in the coiled-coil, DNA binding, and SH2 domains and healthy donors were used to study STAT1 levels and phosphorylation (pSTAT1) following IFNγ and IFNα stimulation. STAT1 protein levels were measured by flow cytometry and immunoblot. STAT1 mRNA levels were measured using quantitative reverse transcription PCR. STAT1 protein degradation was studied using cycloheximide. Patient IFNγ and IFNα induced peak pSTAT1 was higher than in healthy controls. The velocity of pSTAT1 dephosphorylation after treatment of IFNγ stimulated CD14+ monocytes with the Janus Kinase (JAK)-inhibitor ruxolitinib was significantly faster in patient cells. STAT1 protein levels in patient CD14+ monocytes and CD3+ T cells were higher than in healthy donors. There was a strong and positive correlation between CD14+ STAT1 protein levels and peak pSTAT1 levels. Patient fresh PBMC STAT1 mRNA levels were increased at rest and after 16 h of incubation. STAT1 protein degradation was similar in patient and healthy volunteer cells. Patient IFNγ receptors 1 and 2 and JAK2 levels were normal. One patient in our cohort was treated with the oral JAK inhibitor ruxolitinib. Treatment was associated with normalization of both STAT1 protein and peak pSTAT1 levels. After JAK inhibitor treatment was stopped the patient's CD14+ monocyte STAT1 protein and peak phosphorylation levels increased proportionally. These findings suggest that patients with STAT1 GOF mutations have higher levels of total STAT1 protein, leading to high levels of pSTAT1 after stimulation, despite rapid STAT1 dephosphorylation and normal degradation.
- Published
- 2019
18. Reciprocal regulation of Th2 and Th17 cells by PAD2-mediated citrullination
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Bo Sun, Paul R. Thompson, Ari J. Salinger, Eranthie Weerapana, Hui-Hsin Chang, Miriam A. Shelef, Mandar Bawadekar, Caitlyn L. Holmes, Beverly Tomita, and I-Cheng Ho
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0301 basic medicine ,Arginine ,medicine.disease_cause ,Autoimmunity ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Immune system ,Th2 Cells ,RAR-related orphan receptor gamma ,Protein-Arginine Deiminase Type 2 ,medicine ,Respiratory Hypersensitivity ,Animals ,Humans ,Transcription factor ,Lung ,Chemistry ,GATA3 ,Citrullination ,General Medicine ,Acquired immune system ,Cell biology ,030104 developmental biology ,030220 oncology & carcinogenesis ,Th17 Cells ,Research Article - Abstract
Dysregulated citrullination, a unique form of posttranslational modification catalyzed by the peptidylarginine deiminases (PADs), has been observed in several human diseases, including rheumatoid arthritis. However, the physiological roles of PADs in the immune system are still poorly understood. Here, we report that global inhibition of citrullination enhances the differentiation of type 2 helper T (Th2) cells but attenuates the differentiation of Th17 cells, thereby increasing the susceptibility to allergic airway inflammation. This effect on Th cells is due to inhibition of PAD2 but not PAD4. Mechanistically, PAD2 directly citrullinates GATA3 and RORγt, 2 key transcription factors determining the fate of differentiating Th cells. Citrullination of R330 of GATA3 weakens its DNA binding ability, whereas citrullination of 4 arginine residues of RORγt strengthens its DNA binding. Finally, PAD2-deficient mice also display altered Th2/Th17 immune response and heightened sensitivity to allergic airway inflammation. Thus, our data highlight the potential and caveat of PAD2 as a therapeutic target of Th cell-mediated diseases.
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- 2019
19. NBCe1 is a novel regulator of pancreatic β‐cell function in diabetes
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Naureen Javeed, Michael F. Romero, Kuntol Rakshit, Aleksey V. Matveyenko, Matthew R. Brown, and Heather L. Holmes
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β cell function ,Chemistry ,Diabetes mellitus ,Genetics ,Regulator ,Cancer research ,medicine ,medicine.disease ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2019
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20. Cloning, function, and localization of human, canine, and Drosophila ZIP10 (SLC39A10), a Zn2+ transporter
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Min-Hwang Chang, Paige Williams, Eva Furrow, Marie Christine Franz, Heather L. Holmes, Taku Hirata, Käri Strohmaier, Nicolas Montalbetti, Pablo Cabrero, Akira Kato, Chris J.R. Gallo, Timothy R. DeGrado, Huailei Jiang, Michael F. Romero, Mukesh K. Pandey, Greg M. Landry, Julian A. T. Dow, Aditya Bansal, and Mariam P. Alexander
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0301 basic medicine ,chemistry.chemical_classification ,Cloning ,inorganic chemicals ,biology ,Physiology ,chemistry.chemical_element ,Transporter ,Zinc ,Micronutrient ,Cofactor ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Enzyme ,chemistry ,biological sciences ,biology.protein ,health occupations ,bacteria ,Transcription factor ,030217 neurology & neurosurgery ,Function (biology) - Abstract
Zinc (Zn2+) is the second most abundant trace element, but is considered a micronutrient, as it is a cofactor for many enzymes and transcription factors. Whereas Zn2+ deficiency can cause cognitive immune or metabolic dysfunction and infertility, excess Zn2+ is nephrotoxic. As for other ions and solutes, Zn2+ is moved into and out of cells by specific membrane transporters: ZnT, Zip, and NRAMP/DMT proteins. ZIP10 is reported to be localized at the apical membrane of renal proximal tubules in rats, where it is believed to play a role in Zn2+ import. Renal regulation of Zn2+ is of particular interest in light of growing evidence that Zn2+ may play a role in kidney stone formation. The objective of this study was to show that ZIP10 homologs transport Zn2+, as well as ZIP10, kidney localization across species. We cloned ZIP10 from dog, human, and Drosophila ( CG10006), tested clones for Zn2+ uptake in Xenopus oocytes and localized the protein in renal structures. CG10006, rather than foi (fear-of-intimacy, CG6817) is the primary ZIP10 homolog found in Drosophila Malpighian tubules. The ZIP10 antibody recognizes recombinant dog, human, and Drosophila ZIP10 proteins. Immunohistochemistry reveals that ZIP10 in higher mammals is found not only in the proximal tubule, but also in the collecting duct system. These ZIP10 proteins show Zn2+ transport. Together, these studies reveal ZIP10 kidney localization, a role in renal Zn2+ transport, and indicates that CG10006 is a Drosophila homolog of ZIP10.
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- 2019
21. Failure behaviour in woven thermoplastic composites subjected to various deformation modes
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Raj Das, Zbigniew Stachurski, George Vlandis, Paul Compston, and John L. Holmes
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Polypropylene ,Digital image correlation ,Materials science ,Composite number ,02 engineering and technology ,Bending ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Clamping ,Finite element method ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Mechanics of Materials ,visual_art ,Ceramics and Composites ,visual_art.visual_art_medium ,Composite material ,Polycarbonate ,Deformation (engineering) ,0210 nano-technology - Abstract
Woven thermoplastic composites are attractive to manufacturers due to their thermo-formability, but limitations in predicting complex failure behaviour still hinder widespread use. This work uses new specimen geometries and an associated apparatus to induce a selection of deformation modes and allows composite failure to be investigated under them. These specimens are tested with three different woven composites with varying matrix (polypropylene - PP, polycarbonate - PC), reinforcement (glass, PP), and weave (twill, satin). Strains captured with a Digital Image Correlation (DIC) system integrated with the hemispherical testing device show the strain evolution and deformation mode. Finite Element Analysis (FEA) demonstrates that friction, clamping, and bending have a minor effect on composite failure location and strain state. Experiments show significant differences in macroscale and mesoscale deformation and failure response due to composite constituents and weave architectures. A maximum fibre strain criterion is shown to be effective for fibre-reinforced composites across a range of deformation modes.
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- 2021
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22. General methods for the synthesis and late-stage diversification of 2,4-substituted 7-azaindoles
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Anil Patel, Rebecca E. Meadows, Kurt Gordon Pike, Jane E. Moore, Turner Paul, Darren Stead, Barlaam Bernard Christophe, Andrew Stark, Jemma Clark, Janet Hawkins, Bin Yang, Bryan Roberts, Craig S. Donald, Gemma Davison, Esther Moore, Chris De Savi, Tyler Grebe, Calum Cook, Melissa Vasbinder, Simon C. C. Lucas, Andrew Lister, Jeffrey G. Varnes, Kumar Thakur, Sudhir M. Hande, Jane L. Holmes, Thomas M. McGuire, Alexander Hird, and Allan Dishington
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010405 organic chemistry ,Chemistry ,Pinacol ,Organic Chemistry ,Late stage ,010402 general chemistry ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,Catalysis ,chemistry.chemical_compound ,Yield (chemistry) ,Drug Discovery ,Organic chemistry - Abstract
As part of a medicinal chemistry program, we adapted known synthetic methods for the late-stage diversification of 2,4-substituted 7-azaindoles. The strengths and weaknesses of these strategies are discussed. In the course of this work, three optimized conditions were identified from an iterative catalyst screen for the conversion of Boc-protected 4-chloro-2-(piperidin-4-yl)-7-azaindole to the corresponding pinacol borate ester. Additionally, a scalable route to previously unreported Boc-protected 4-bromo-2-(piperidin-4-yl)-7-azaindole and efficient conversion to the corresponding pinacol borate ester in 72% isolated yield are also disclosed.
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- 2016
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23. Synthesis of Novel Hydroxymethyl-Substituted Fused Heterocycles
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Laksmaiah Gingipalli, Jane E. Moore, Rosemary A. Croft, Barlaam Bernard Christophe, Janet Hawkins, Hai-Jun Zhang, Tao Wang, Anil Patel, Lynsie Almeida, Xiaolan Zheng, Kurt Gordon Pike, Timothy Pontz, Allan Dishington, Stephanos Ioannidis, Xiaoyun Wu, Jeffrey W. Johannes, Lorraine A. Hassall, Jane L. Holmes, and Thomas M. McGuire
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0301 basic medicine ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Hydroxymethyl ,01 natural sciences ,Combinatorial chemistry ,Catalysis ,0104 chemical sciences - Abstract
Examples of hydroxymethylated analogues of heteroaryl cores such as quinazolin-4-ones, isoquinolin-1(2H)-ones, pyrido[3,4-d]pyrimidin-4(3H)-ones, chromen-4-ones and pyrrolo[2,1-f][1,2,4]triazin-4(3H)-ones are sparse or non-existent in the scientific literature. We have demonstrated that such compounds are accessible by using standard procedures from readily available raw materials.
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- 2016
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24. Design and Applications of Bifunctional Small Molecules in Biology
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Damian W. Young, Wanderson C. Rezende, Lyra Chang, Prasanna Kandel, Idris O. Raji, Secondra L Holmes, and Shelton R. Boyd
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Staining and Labeling ,Biophysics ,Computational biology ,MOLECULAR BIOLOGY METHODS ,Biology ,Biochemistry ,Small molecule ,Analytical Chemistry ,Small Molecule Libraries ,chemistry.chemical_compound ,chemistry ,Drug Design ,Molecular Probes ,Humans ,Immunologic Factors ,Enzyme Inhibitors ,Bifunctional ,Oligopeptides ,Molecular Biology - Published
- 2021
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25. Development of an S-specimen geometry for shear testing of woven thermoplastic composites
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Shankar Kalyanasundaram, John L. Holmes, Zbigniew Stachurski, Paul Compston, and Raj Das
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Polypropylene ,Digital image correlation ,Materials science ,Mechanical Engineering ,Composite number ,02 engineering and technology ,Pure shear ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Industrial and Manufacturing Engineering ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Shear (geology) ,Mechanics of Materials ,visual_art ,Ceramics and Composites ,Peek ,Shear stress ,visual_art.visual_art_medium ,Composite material ,Polycarbonate ,0210 nano-technology - Abstract
A fundamental understanding of pure shear failure is important in elucidating the failure characteristics of woven thermoplastic composites. This work presents a novel S-specimen design and an associated methodology for testing pure in-plane shear failure in composites. The technique has been experimentally tested with woven thermoplastic composites which have complex failure evolution in shear due to their weave architecture. Four different composites were considered to demonstrate the scope of the technique application, with various combinations of weave (plain, satin, twill), matrix (Polypropylene — PP, Polycarbonate — PC, Polyetheretherketone — PEEK), and fibre (glass, carbon, PP). A Digital Image Correlation (DIC) system integrated with the hemispherical testing device validated that shear strain was the dominant strain in the failure region. From this work, it is evident that shear failure morphology varies between the tested composites based on the differences in their weave architecture and fibre and matrix properties. Additional Finite Element Analysis (FEA) showed that neither bending nor friction hindered the tests ability to produce pure shear in the specimen. This new shear specimen provides a means of inducing shear failure utilising the hemispherical dome apparatus currently used for composite forming studies and failure analysis of other deformation modes between uniaxial and equi-biaxial tension.
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- 2020
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26. Insight into Neutrophil Extracellular Traps through Systematic Evaluation of Citrullination and Peptidylarginine Deiminases
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John F. Kernien, Chad J. Johnson, Daeun Shim, Miriam A. Shelef, Jeniel E. Nett, and Caitlyn L. Holmes
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lcsh:Immunologic diseases. Allergy ,Article Subject ,Neutrophils ,Inflammatory arthritis ,Immunology ,Arthritis ,Biology ,Extracellular Traps ,Arthritis, Rheumatoid ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Protein-Arginine Deiminase Type 2 ,medicine ,Citrulline ,Animals ,Humans ,Immunology and Allergy ,030304 developmental biology ,Mice, Knockout ,0303 health sciences ,Ionomycin ,Autoantibody ,Citrullination ,General Medicine ,Neutrophil extracellular traps ,medicine.disease ,Uric Acid ,chemistry ,Mice, Inbred DBA ,030220 oncology & carcinogenesis ,Rheumatoid arthritis ,Protein-Arginine Deiminases ,Tetradecanoylphorbol Acetate ,lcsh:RC581-607 ,Research Article - Abstract
In rheumatoid arthritis, an autoimmune inflammatory arthritis, citrullinated proteins are targeted by autoantibodies and thus thought to drive disease. Neutrophil extracellular traps (NETs) are a source of citrullinated proteins and are increased in rheumatoid arthritis and therefore also implicated in disease pathogenesis. However, not all NETs are citrullinated. One theory aiming to clarify the intersection of citrullination, NETs, and rheumatoid arthritis suggests that specific stimuli induce different types of NETs defined by citrullination status. However, most studies do not evaluate uncitrullinated NETs, only citrullinated or total NETs. Further, the requirement for peptidylarginine deiminase (PAD) 2 and 4, two important citrullinating enzymes in neutrophils and rheumatoid arthritis, in the formation of different NETs has not been clearly defined. To determine if specific stimulants induce citrullinated or uncitrullinated NETs and if those structures require PAD2 or PAD4, human and murine neutrophils, including from PAD4-/- and PAD2-/- mice, were stimulated in vitro and NETs imaged and quantified. In humans, phorbol myristate acetate (PMA), ionomycin, monosodium urate (MSU), and Candida albicans induced NETs with MSU and C. albicans inducing primarily citrullinated, PMA primarily uncitrullinated, and ionomycin a mix of NETs. Only ionomycin and C. albicans were strong inducers of NETs in mice with ionomycin-induced NETs mostly citrullinated and C. albicans-induced NETs a mix of citrullinated and uncitrullinated. Interestingly, no stimulus induced exclusively citrullinated or uncitrullinated NETs. Further, PAD4 was required for citrullinated NETs only, whereas PAD2 was not required for either NET in mice. Therefore, specific stimuli induce varying proportions of both citrullinated and uncitrullinated NETs with different requirements for PAD4. These findings highlight the complexity of NET formation and the need to further define the mechanisms by which different NETs form and their implications for autoimmune disease.
- Published
- 2019
27. Functional analysis of mosquito and Drosophila Na + ‐dependent cation‐chloride cotransporters
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Heather L. Holmes, Peter M. Piermarini, Michael F. Romero, and Christopher M. Gillen
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biology ,Functional analysis ,Cation chloride cotransporters ,Chemistry ,Genetics ,Biophysics ,Drosophila (subgenus) ,Na dependent ,biology.organism_classification ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2020
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28. Roles of Drosophila subdued and anoctamin 4 in calcium oxalate stones
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Muthuvel Jayachandran, Eva Furrow, Pablo Cabrero, Mariah Arneson, John C. Lieske, Michael F. Romero, Heather L. Holmes, Julian A. T. Dow, and Daniel R. Turin
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chemistry.chemical_compound ,biology ,chemistry ,Genetics ,Calcium oxalate ,Drosophila (subgenus) ,biology.organism_classification ,Molecular Biology ,Biochemistry ,Biotechnology ,Cell biology - Published
- 2020
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29. Self-assembly of a Si-based cage by the formation of 24 equivalent covalent bonds
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Berin A. Boughton, Anna Ahveninen, Timothy A. Hudson, Brendan F. Abrahams, Dinaiz Thinagaran, Richard Robson, and Jessica L. Holmes
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010405 organic chemistry ,Chemistry ,Solution state ,Metals and Alloys ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Catalysis ,Cryptophane ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Ion ,Condensed Matter::Soft Condensed Matter ,Crystallography ,Covalent bond ,Physics::Atomic and Molecular Clusters ,Materials Chemistry ,Ceramics and Composites ,Self-assembly ,Cage - Abstract
A robust, nano-sized covalent cage, of composition, [(PhSi)6(ctc)4]6- (H6ctc = cyclotricatechylene) has been prepared in a simple reaction in good yield. The tetrahedral anionic cage is stable in both the solid and solution state and exhibits an affinity for Cs+ ions which bind to the internal surface of the cage.
- Published
- 2018
30. Obesity attenuates serum 25-hydroxyvitamin D response to cholecalciferol therapy in critically ill patients
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Roland N. Dickerson, Gayle Minard, Martin A. Croce, Whitney L. Holmes, and George O. Maish rd
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0301 basic medicine ,Vitamin ,Adult ,Male ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Critical Illness ,Biological Availability ,030209 endocrinology & metabolism ,Gastroenterology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Internal medicine ,Vitamin D and neurology ,Medicine ,Humans ,Dosing ,Obesity ,Serum 25 hydroxyvitamin d ,Vitamin D ,Cholecalciferol ,Retrospective Studies ,030109 nutrition & dietetics ,Nutrition and Dietetics ,Dose-Response Relationship, Drug ,business.industry ,Critically ill ,Retrospective cohort study ,Vitamins ,medicine.disease ,Vitamin D Deficiency ,Treatment Outcome ,chemistry ,Hypercalcemia ,Calcium ,Female ,business - Abstract
The presence of obesity may confound cholecalciferol dosing in vitamin D-deficient patients owing to potentially decreased bioavailability. The aim of this retrospective study was to evaluate cholecalciferol therapy in vitamin D-deficient, critically ill trauma patients with and without obesity.Adult patients with severe traumatic injuries who had a serum 25-hydroxyvitamin D (25-OH vit D)50nmol/L were prescribed 10 000 IU of liquid cholecalciferol daily. Efficacy was defined as achievement of a 25-OH vit D of 75 to 200nmol/L. Safety was evaluated by the presence of hypercalcemia (serum ionized calcium1.32 mmol/L). Fifty-three patients (18 obese, 35 non-obese) were identified for study.Despite similar baseline concentrations (36 ± 7 versus 37 ± 7 nmol/L; P = NS), 25-OH vit D response was attenuated for those with obesity after 1 and 2 wk of cholecalciferol therapy (51 ± 18 versus 66 ± 27nmol/L, P0.01; 68 ± 19 versus 92 ± 25nmol/L, P0.01, respectively). Patients with obesity also tended to experience less hypercalcemia (22% versus 49% of patients, respectively) post-cholecalciferol therapy.Obesity alters the response to cholecalciferol therapy in critically ill patients with severe traumatic injuries.
- Published
- 2018
31. Understanding 16S ribosomal RNA conformational changes during 30S subunit assembly
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Kristi L. Holmes
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chemistry.chemical_classification ,chemistry ,Ribosomal protein ,Protein subunit ,Biophysics ,30S ,Nucleotide ,Biology ,Ribosomal RNA ,16S ribosomal RNA ,Ribosome ,50S - Abstract
The purpose of this course of study is to understand the conformational changes that occur in 16S rRNA during ribosomal assembly. The prokaryotic ribosome comprises two asymmetric subunits, the large (50S) and small (30S) subunits. The 30S subunit contains 16S rRNA and the small ribosomal proteins (S1-S21). Functional 30S ribosomal subunits can be reconstituted in vitro from purified components. Reconstitution performed at low temperatures results in a stall in 30S subunit assembly. This stall produces a Reconstitution Intermediate (RI) which sediments at 21S and contains 16S rRNA and a subset of small subunit proteins. In order for RI to be converted into functional 30S subunits, a temperature shift is first required. This shift produces a particle, RI*, with the same composition as RI, yet a dramatically different sedimentation coefficient (26S). RI* can then go on to bind the remaining small subunit proteins, ultimately resulting in functional 30S subunit formation. To better understand the nature of these assembly transitions and thus small subunit assembly, changes in reactivity of each nucleotide during the course of assembly was monitored. The changes in reactivity of nucleotides in 16S rRNA between each of the assembly species (16S, RI, RI* and 30S) were analyzed in the context of the 30S subunit structure and previous biochemical studies to better understand the relationship between ribosomal assembly and function.
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- 2018
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32. A Review of the New Antiepileptic Drugs for Focal-Onset Seizures in Pediatrics: Role of Extrapolation
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O'Neill F. D'Cruz, Alexis Arzimanoglou, Douglas R. Nordli, Gregory L. Holmes, and Shlomo Shinnar
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Male ,Pediatrics ,medicine.medical_specialty ,Lacosamide ,Response to intervention ,MEDLINE ,Psychological intervention ,Brivaracetam ,030226 pharmacology & pharmacy ,03 medical and health sciences ,Perampanel ,chemistry.chemical_compound ,0302 clinical medicine ,Pharmacotherapy ,Seizures ,medicine ,Humans ,Pharmacology (medical) ,Child ,business.industry ,chemistry ,Pediatrics, Perinatology and Child Health ,Etiology ,Anticonvulsants ,Female ,business ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Most antiepileptic drugs (AEDs) receive regulatory approval for children years after the drug is available in adults, encouraging off-label use of the drug in children and hindering attempts to obtain quality pediatric data in controlled trials. Extrapolating adult efficacy data to pediatrics can reduce the time between approval in adults and that in children. To extrapolate efficacy from adults to children, several assumptions must be supported, such as (1) a similar disease progression and response to interventions in adults and children, and (2) similar exposure response in adults and children. The Pediatric Epilepsy Academic Consortium for Extrapolation (PEACE) addressed these assumptions in focal-onset seizures (FOS), the most common seizure type in both adults and children. PEACE reviewed the biological and clinical evidence that supported the assumptions that children with FOS have a similar disease progression and response to intervention as adults with FOS. After age 2 years, the pathophysiological underpinnings of FOS and the biological milieu in which seizures are initiated and propagated in children, seizure semiology, electroencephalographic features, etiology and AED response to FOS in children are similar to those in adults with FOS. PEACE concluded that extrapolation of efficacy data in adults to pediatrics in FOS is supported by strong scientific and clinical evidence. However, safety and pharmacokinetic (PK) data cannot be extrapolated from adults to children. Based on extrapolation, eslicarbazepine is now approved for children with FOS, down to age 4 years. Perampanel, lacosamide and brivaracetam are now undergoing PK and safety studies for the purposes of extrapolation down to age 2 or 4 years. When done in conjunction with PK and safety investigations in children, extrapolation of adult data from adults to children can reduce the time delay between approval of effective and safe AEDs in adults and approval in children.
- Published
- 2018
33. DNA Area and NETosis Analysis (DANA): a High-Throughput Method to Quantify Neutrophil Extracellular Traps in Fluorescent Microscope Images
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Miriam A. Shelef, Christie M. Bartels, Ryan Rebernick, Nicole Rademacher, Lauren M Fahmy, Christopher R. Glover, Daeun Shim, Hemanth Potluri, Caitlyn L. Holmes, and Mandar Bawadekar
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Fluorescence microscopy ,0301 basic medicine ,Research ,Neutrophil extracellular trap (NET) ,Neutrophil extracellular traps ,Biology ,Control subjects ,ImageJ ,General Biochemistry, Genetics and Molecular Biology ,3. Good health ,Chromatin ,Cell biology ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,0302 clinical medicine ,chemistry ,Quantification ,030220 oncology & carcinogenesis ,Fluorescence microscope ,Extracellular ,Optimal methods ,DNA area ,Semi-automated ,DNA - Abstract
Background Neutrophil extracellular traps (NETs), extracellular structures composed of decondensed chromatin and antimicrobial molecules, are released in a process called NETosis. NETs, which are part of normal host defense, have also been implicated in multiple human diseases. Unfortunately, methods for quantifying NETs have limitations which constrain the study of NETs in disease. Establishing optimal methods for NET quantification holds the potential to further elucidate the role of NETs in normal and pathologic processes. Results To better quantify NETs and NET-like structures, we created DNA Area and NETosis Analysis (DANA), a novel ImageJ/Java based program which provides a simple, semi-automated approach to quantify NET-like structures and DNA area. DANA can analyze many fluorescent microscope images at once and provides data on a per cell, per image, and per sample basis. Using fluorescent microscope images of Sytox-stained human neutrophils, DANA quantified a similar frequency of NET-like structures to the frequency determined by two different individuals counting by eye, and in a fraction of the time. As expected, DANA also detected increased DNA area and frequency of NET-like structures in neutrophils from subjects with rheumatoid arthritis as compared to control subjects. Using images of DAPI-stained murine neutrophils, DANA (installed by an individual with no programming background) gave similar frequencies of NET-like structures as the frequency of NETs determined by two individuals counting by eye. Further, DANA quantified more NETs in stimulated murine neutrophils compared to unstimulated, as expected. Conclusions DANA provides a means to quantify DNA decondensation and the frequency of NET-like structures using a variety of different fluorescent markers in a rapid, reliable, simple, high-throughput, and cost-effective manner making it optimal to assess NETosis in a variety of conditions. Electronic supplementary material The online version of this article (10.1186/s12575-018-0072-y) contains supplementary material, which is available to authorized users.
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- 2018
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34. Disordered Antigens and Epitope Overlap Between Anti-Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis
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Aisha M Mergaert, Michael A. Newton, Zihao Zheng, Alan J. Bridges, Lauren M Fahmy, Miriam A. Shelef, Caitlyn L. Holmes, Irene M. Ong, and Mandar Bawadekar
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0301 basic medicine ,musculoskeletal diseases ,Male ,Immunology ,Autoantigens ,Epitope ,Anti-Citrullinated Protein Antibodies ,Article ,Arthritis, Rheumatoid ,03 medical and health sciences ,Epitopes ,0302 clinical medicine ,Rheumatology ,Antigen ,Rheumatoid Factor ,Immunology and Allergy ,Rheumatoid factor ,Humans ,skin and connective tissue diseases ,030203 arthritis & rheumatology ,biology ,Chemistry ,Autoantibody ,Citrullination ,Anti–citrullinated protein antibody ,IgM binding ,Molecular biology ,030104 developmental biology ,IgG binding ,biology.protein ,Female - Abstract
OBJECTIVE Anti-citrullinated protein antibodies (ACPAs) and rheumatoid factor (RF) are commonly present in rheumatoid arthritis (RA) without a clear rationale for their coexistence. Moreover, autoantibodies develop against proteins with different posttranslational modifications and native proteins without obvious unifying characteristics of the antigens. We undertook this study to broadly evaluate autoantibody binding in seronegative and seropositive RA to identify novel features of reactivity. METHODS An array was created using a total of 172,828 native peptides, citrulline-containing peptides, and homocitrulline-containing peptides derived primarily from proteins citrullinated in the rheumatoid joint. IgG and IgM binding to peptides were compared between cyclic citrullinated peptide (CCP)-positive RF+, CCP+RF-, CCP-RF+, and CCP-RF- serum from RA patients (n = 48) and controls (n = 12). IgG-bound and endogenously citrullinated peptides were analyzed for amino acid patterns and predictors of intrinsic disorder, i.e., unstable 3-dimensional structure. Binding to IgG-derived peptides was specifically evaluated. Enzyme-linked immunosorbent assay confirmed key results. RESULTS Broadly, CCP+RF+ patients had high citrulline-specific IgG binding to array peptides and CCP+RF- and CCP-RF+ patients had modest citrulline-specific IgG binding (median Z scores 3.02, 1.42, and 0.75, respectively; P < 0.0001). All RA groups had low homocitrulline-specific binding. CCP+RF+ patients had moderate IgG binding to native peptides (median Z score 2.38; P < 0.0001). The highest IgG binding was to citrulline-containing peptides, irrespective of protein identity, especially if citrulline was adjacent to glycine or serine, motifs also seen in endogenous citrullination in the rheumatoid joint. Highly bound peptides had multiple features predictive of disorder. IgG from CCP+RF+ patients targeted citrulline-containing IgG-derived peptides. CONCLUSION Disordered antigens, which are frequently citrullinated, and common epitopes for ACPAs and RF are potentially unifying features for RA autoantibodies.
- Published
- 2018
35. Metal ion hydrocarbon bidentate bonding in alkyl acetates, methyl alkanoates, alcohols and 1-alkenes: a comparative study
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Peter C. Burgers, John L. Holmes, Johan K Terlouwc, and Neurology
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chemistry.chemical_classification ,Denticity ,Double bond ,Chemistry ,Dimer ,Metal ions in aqueous solution ,010401 analytical chemistry ,Inorganic chemistry ,General Medicine ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,Atomic and Molecular Physics, and Optics ,Dissociation (chemistry) ,0104 chemical sciences ,chemistry.chemical_compound ,Proton affinity ,Spectroscopy ,Gas-phase ion chemistry ,Alkyl - Abstract
The relative affinity of the monovalent metal ions Li+, Na+, Cu+ and Ag+ towards a series of aliphatic alkyl acetates and some selected 1-alkenes (P) was examined using the kinetic method. A detailed analysis of the dissociation characteristics of a series of mixed metal-bound dimer ions of the type P1-M+-P2 and the evaluated proton affinities (PAs) of the monomers shows that the affinity of the cation towards long-chain alkyl acetates and alkenes (having a chain length ? C4) is markedly enhanced. In line with recent studies of nitriles, alcohols and methyl alkanoates, this is attributed to a bidentate interaction of the metal ion with the functional group or double bond and the aliphatic chain. In particular, the longer chain alkyl acetates, methyl alkanoates and alcohols show a remarkably similar behaviour with respect to silver ion hydrocarbon bonding. The Ag+ adducts of the alkyl acetates dissociate by loss of CH3COOH. This reaction becomes more pronounced at longer chain lengths, which points to metal ion bidentate formation in [Ag+···1-alkene] product ions having a long hydrocarbon chain. In the same vein, the heterodimers [1-hexene···Ag+···1-heptene] and [1-heptene·Ag+···1-octene] dissociate primarily into [Ag+···1-heptene] and [Ag+···1-octene] ions, respectively. Hydrocarbon bidentate formation in [Ag+···1-octene] also reveals itself by the reluctance of this ion to react with water in an ion trap, as opposed to [Ag+···1-hexene] which readily undergoes hydration.
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- 2016
36. Interaction of metal cations with functionalised hydrocarbons in the gas phase: further experimental evidence for solvation of metal ions by the hydrocarbon chain
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Theo M. Luider, John L. Holmes, Karl J. Jobst, Peter C. Burgers, Nick A. van Huizen, Johan K. Terlouw, Neurology, and Surgery
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Metal ions in aqueous solution ,Dimer ,010401 analytical chemistry ,Inorganic chemistry ,Solvation ,Alcohol ,General Medicine ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,Atomic and Molecular Physics, and Optics ,Dissociation (chemistry) ,0104 chemical sciences ,Metal ,chemistry.chemical_compound ,chemistry ,visual_art ,visual_art.visual_art_medium ,Amine gas treating ,Spectroscopy ,Gas-phase ion chemistry - Abstract
Relative affinity measurements of monovalent metal ions (=Li+, Cu+ and Ag+) towards aliphatic amines, alcohols and methyl alkanoates (P) have been performed using the kinetic method on the dissociation of metal-bound dimer ions of the type P1–M+–P2. It was found that the cations' affinity towards long chain (≥C4 chain length) n- and s-alkylamines, n-alkanols and methyl n-alkanoates was unexpectedly enhanced. This is attributed to a bidentate interaction of the metal ion with the amine, alcohol or ester functional group and the aliphatic chain, paralleling earlier observations on metal-bound nitriles. Methyl substitution at the functional group ( s-alkylamines compared with n-alkylamines) serves to strengthen only the N M+ bond, and this can be rationalised by the larger proton affinities of s-alkylamines compared to n-alkylamines. This substitution, however, has no effect on the metal ion–hydrocarbon bond. In contrast, methyl substitution remote from the functional group, as in iso-pentylamine, does lead to strengthening of the metal ion–hydrocarbon bond. The cuprous ion affinity of hexadecylamine, C16H33NH2, was found to be as large as that for ethylenediamine (352 kJ mol−1), known to be a strong copper binding agent. It is argued that such a metal ion - hydrocarbon interaction does not occur in the metal bound dimers.
- Published
- 2016
37. Human Skin Cells Are More Sensitive than Human Lung Cells to the Cytotoxic and Cell Cycle Arresting Impacts of Particulate and Soluble Hexavalent Chromium
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James T.F. Wise, Jamie L. Young, Amie L. Holmes, Hong Xie, Sandra S. Wise, and John Pierce Wise
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Chromium ,Cell Survival ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Cell Culture Techniques ,Human skin ,medicine.disease_cause ,Biochemistry ,Article ,Cell Line ,Inorganic Chemistry ,Toxicology ,chemistry.chemical_compound ,medicine ,Humans ,Cytotoxic T cell ,Hexavalent chromium ,Cytotoxicity ,Lung ,Carcinogen ,Skin ,integumentary system ,Chemistry ,Biochemistry (medical) ,Cell Cycle Checkpoints ,General Medicine ,Fibroblasts ,Cell cycle ,medicine.disease ,Solubility ,Organ Specificity ,Cancer research ,Environmental Pollutants ,Skin cancer ,Genotoxicity - Abstract
Hexavalent chromium Cr(VI) is a known human lung carcinogen, with solubility playing an important role in its carcinogenic potency. Dermal exposure to Cr(VI) is common and has been associated with skin damage; however, no link between chromate exposure and skin cancer has been found. In this study, we compared the cytotoxic and clastogenic effects of Cr(VI) and its impacts on cell cycle progression in human lung and skin fibroblasts. We found human skin cells arrested earlier in their cell cycle and exhibit more cytotoxicity than human lung cells, despite taking up similar amounts of Cr. These outcomes are consistent with a hypothesis that different cellular and molecular responses underlie the differences in carcinogenic outcome in these two tissues.
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- 2015
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38. Probing Electronics as a Function of Size and Surface of Colloidal Germanium Nanocrystals
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Alexandra L. Holmes, Elayaraja Muthuswamy, Jeanette Hütges, Klaus Meerholz, Susan M. Kauzlarich, and Anna Reckmann
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Materials science ,Ligand ,Analytical chemistry ,chemistry.chemical_element ,Germanium ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Colloid ,chemistry.chemical_compound ,General Energy ,Nanocrystal ,chemistry ,Quantum dot ,Oleylamine ,Physical and Theoretical Chemistry ,Cyclic voltammetry ,Microwave - Abstract
Inorganic semiconductor nanoparticles are of significant interest for applications that benefit from their size-dependent properties. The work presented here focuses on the characterization of solution-based microwave synthesized Ge nanocrystals (NCs). Three differently capped Ge NCs were investigated: oleylamine (OAM), dodecanethiol (DDT), and a functionalized N4,N4,N4′,N4′-tetraphenylbiphenyl-4,4′-diamine (TPD) ligand, which is commonly used as hole-transporting units. The optical gaps followed the expected trend for quantum confinement; however, the absolute value depended upon the ligand. We found that the DDT-capped Ge NCs feature consistently larger bandgaps than OAM-capped Ge NCs of a similar size. Cyclic voltammetry (CV) was used to determine the valence band energy for OAM-capped Ge NCs, and the conduction band energy was estimated from the optical gap. By contrast, DDT-capped Ge NCs and the OAM/DDT-capped Ge NCs did not exhibit an oxidative signal in the cyclic voltammetry. This was attributed t...
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- 2015
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39. InP-based multiple type-II quantum-well integrated waveguide p-i-n photodiodes for mid-infrared detection
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Sadhvikas Addamane, Andreas Beling, Ye Wang, Ganesh Balakrishnan, Archie L. Holmes, and Bassem Tossoun
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Optical fiber ,Materials science ,business.industry ,Mid infrared ,02 engineering and technology ,Waveguide (optics) ,law.invention ,Photodiode ,Responsivity ,chemistry.chemical_compound ,020210 optoelectronics & photonics ,Optics ,chemistry ,law ,0202 electrical engineering, electronic engineering, information engineering ,Indium phosphide ,Optoelectronics ,business ,Quantum well ,Dark current - Abstract
We present an InP-based p-i-n photodiode with multiple InGaAs/GaAsSb type-II quantum wells for 2μm detection. The fabricated photodiode shows a responsivity of 0.24 A/W at 2μm, with dark current as low as 1μA at −2V, and 3dB-bandwidth of 2 GHz under 1.55μm optical illumination.
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- 2017
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40. Inhibition of blood-brain barrier efflux transporters promotes seizure in pregnant rats: Role of circulating factors
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Sophie Sakkaki, Sarah M. Tremble, Abbie C. Johnson, Gregory L. Holmes, Marilyn J. Cipolla, and Erica Hammer
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0301 basic medicine ,medicine.medical_specialty ,Immunology ,Hippocampus ,Hippocampal formation ,Blood–brain barrier ,Article ,Rats, Sprague-Dawley ,03 medical and health sciences ,Behavioral Neuroscience ,chemistry.chemical_compound ,0302 clinical medicine ,Pregnancy ,Seizures ,Internal medicine ,medicine ,Animals ,Neuroinflammation ,P-glycoprotein ,biology ,Estradiol ,Endocrine and Autonomic Systems ,Motor Cortex ,Transporter ,Electroencephalography ,Fluoresceins ,Vascular endothelial growth factor ,Pregnancy Complications ,030104 developmental biology ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Blood-Brain Barrier ,biology.protein ,Female ,Efflux ,030217 neurology & neurosurgery - Abstract
Seizure-provoking factors circulate late in gestation during normal pregnancy, but do not readily gain access to the brain due to the protective nature of the blood-brain barrier. In particular, efflux transporters are powerful ATP-driven pumps that actively prevent unwanted compounds from entering the brain. We hypothesized that acute inhibition of efflux transporters at the blood-brain barrier would result in spontaneous seizures in pregnant rats. We further hypothesized that the blood-brain barrier protects the maternal brain from seizure by increasing expression and/or activity of p-glycoprotein (P-gp), a major efflux transporter. Main blood-brain barrier efflux transporters were inhibited in-vivo in nonpregnant (Nonpreg) and pregnant (Preg; d19) Sprague Dawley rats (n = 8/group). Seizures were monitored in conscious animals for 8 hours via chronically implanted electroencephalography (EEG) electrodes in the hippocampus and motor cortex and time-synced video. P-gp activity was measured via a calcein accumulation assay in freshly isolated cortical and hippocampal capillaries from Preg (d20) and Nonpreg rats (n = 8–16/group), to assess regional susceptibility to transporter inhibition. P-gp expression, capillary density, and microglial activation as a measure of neuroinflammation were quantified using immunohistochemistry (n = 4–6/group). Efflux transporter inhibition elicited hippocampal seizures within 1 hour in 100% of Preg rats that was not associated with neuroinflammation or elevated tumor necrosis factor alpha (TNFα) or vascular endothelial growth factor (VEGF), but negatively correlated with levels of estradiol. Hippocampal seizures were considerably less prevalent in Nonpreg rats. However, behavioral seizures in the motor cortex developed of similar severity in both groups of rats, demonstrating regional heterogeneity in response to efflux transporter inhibition. Basal P-gp activity was similar between groups, however, exposure to serum from Preg rats significantly decreased P-gp activity in the hippocampus, but not cortex, compared to serum from Nonpreg rats (0.29±0.1 units/sec in Preg vs. 0.06±0.02 units/sec in Nonpreg rats; p < 0.05) that was not associated with elevated TNFα or VEGF. Thus, pregnancy differentially increased the susceptibility of the hippocampus to seizures in response to blood-brain barrier efflux transporter inhibition that may be due to the inhibitory effect of circulating factors in pregnancy on P-gp activity in the hippocampus.
- Published
- 2017
41. Selective palladium-catalysed amination of 4-chloropyridines with benzylamines using the Josiphos ligand
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Lorraine A. Hassall, Jane L. Holmes, Janet Hawkins, and Clare Gregson
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chemistry.chemical_compound ,Benzylamine ,Chemistry ,Ligand ,Organic Chemistry ,Drug Discovery ,chemistry.chemical_element ,Buchwald–Hartwig amination ,Biochemistry ,Combinatorial chemistry ,Amination ,Palladium - Abstract
A synthetic strategy for the synthesis of a library of 4- N -benzylamino-2- N -phenyl-pyridines is herein described. The approach involves a Pd-assisted cross-coupling of a 4-chloro- N -phenylpyridin-2-amine intermediate with a range of benzylamines. A variety of ligands were screened, the most successful being the Josiphos ligand, which gave the desired products in good to moderate yields. The reactions occur quickly, within 30 min, with full conversion of the intermediate into the desired product.
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- 2014
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42. Homologous Recombination Repair Signaling in Chemical Carcinogenesis: Prolonged Particulate Hexavalent Chromium Exposure Suppresses the Rad51 Response in Human Lung Cells
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Sandra S. Wise, Hong Xie, Kelsey N. Thompson, Qin Qin, Cynthia L. Browning, John Pierce Wise, and Amie L. Holmes
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Time Factors ,Carcinogenesis ,Cell Culture Techniques ,RAD51 ,Biology ,Toxicology ,Article ,Cell Line ,chemistry.chemical_compound ,Chromates ,Humans ,DNA Breaks, Double-Stranded ,Neoplastic transformation ,Hexavalent chromium ,Lung ,Carcinogen ,Chromosome Aberrations ,Recombinational DNA Repair ,Molecular biology ,Double Strand Break Repair ,Comet assay ,chemistry ,Zinc Compounds ,Carcinogens ,Comet Assay ,Rad51 Recombinase ,Homologous recombination ,DNA ,Mutagens - Abstract
The aim of this study was to focus on hexavalent chromium, [Cr(VI)], a chemical carcinogen and major public health concern, and consider its ability to impact DNA double strand break repair. We further focused on particulate Cr(VI), because it is the more potent carcinogenic form of Cr(VI). DNA double strand break repair serves to protect cells against the detrimental effects of DNA double strand breaks. For particulate Cr(VI), data show DNA double strand break repair must be overcome for neoplastic transformation to occur. Acute Cr(VI) exposures reveal a robust DNA double strand break repair response, however, longer exposures have not been considered. Using the comet assay, we found longer exposures to particulate zinc chromate induced concentration-dependent increases in DNA double strand breaks indicating breaks were occurring throughout the exposure time. Acute (24 h) exposure induced DNA double strand break repair signaling by inducing Mre11 foci formation, ATM phosphorylation and phosphorylated ATM foci formation, Rad51 protein levels and Rad51 foci formation. However, longer exposures reduced the Rad51 response. These data indicate a major chemical carcinogen can simultaneously induce DNA double strand breaks and alter their repair and describe a new and important aspect of the carcinogenic mechanism for Cr(VI).
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- 2014
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43. Identification, Optimization, and Pharmacology of Acylurea GHS-R1a Inverse Agonists
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Suzanne S. Bowker, Clive Green, Graeme R. Robb, Stephen Stokes, Nathaniel G. Martin, Anne Ertan, David G.A. Morgan, Christopher Sheldon, Alexander G. Dossetter, Robert D. M. Davies, David S. Clarke, Alastair J. H. Brown, William McCoull, Helen Pointon, Jane E. Moore, Mark L. Fenwick, Nicholas John Newcombe, Claire Newton, Jane L. Holmes, David J. Masters, Peter Barton, and Jennifer Cameron
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Models, Molecular ,medicine.medical_specialty ,Drug Inverse Agonism ,High-throughput screening ,Pharmacology ,Partial agonist ,Structure-Activity Relationship ,chemistry.chemical_compound ,Internal medicine ,Drug Discovery ,medicine ,Humans ,Urea ,Inverse agonist ,Structure–activity relationship ,Receptors, Ghrelin ,Receptor ,Dose-Response Relationship, Drug ,Molecular Structure ,digestive, oral, and skin physiology ,Endocrinology ,chemistry ,Molecular Medicine ,Ghrelin ,Penetrant (biochemical) ,hormones, hormone substitutes, and hormone antagonists - Abstract
Ghrelin plays a major physiological role in the control of food intake, and inverse agonists of the ghrelin receptor (GHS-R1a) are widely considered to offer utility as antiobesity agents by lowering the set-point for hunger between meals. We identified an acylurea series of ghrelin modulators from high throughput screening and optimized binding affinity through structure-activity relationship studies. Furthermore, we identified specific substructural changes, which switched partial agonist activity to inverse agonist activity, and optimized physicochemical and DMPK properties to afford the non-CNS penetrant inverse agonist 22 (AZ-GHS-22) and the CNS penetrant inverse agonist 38 (AZ-GHS-38). Free feeding efficacy experiments showed that CNS exposure was necessary to obtain reduced food intake in mice, and it was demonstrated using GHS-R1a null and wild-type mice that this effect operates through a mechanism involving GHS-R1a.
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- 2014
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44. Methods for critically assessing old and for estimating new organic gas-phase neutral and ion thermochemical data. A user’s guide
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Christiane Aubry and John L. Holmes
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Primary (chemistry) ,Proton ,Group (periodic table) ,Chemistry ,Additive function ,Computation ,Ionization ,Thermodynamics ,Physical and Theoretical Chemistry ,Atomic physics ,Affinities ,Ion - Abstract
A broad, general understanding of the relationships between chemical structures and their various energies is of primary importance when assessing the validity of an energy derived from experiment or computation. This review is intended to provide guidance and advice for scientists seeking data for standard enthalpies of formation (ΔfH0) and ionisation energies (IE) for a wide variety of organic compounds and ΔfH0 values for their odd- and even-electron cations. The major reference sources are critically reviewed and methods are described for the accurate estimation of ΔfH0 of neutral compounds and correlation schemes for IE, proton affinities (PA) and ΔfH0 values for odd- and even-electron positive ions. ΔfH0 data for neutral organics are well reproduced by the additivity method and up-to-date tables of group values are provided, as well as directions for their application. Free radical ΔfH0 values are also reported. The situation for odd-electron cations (molecular ions) is not as simple, but reliable c...
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- 2014
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45. Reduced IgG titers against pertussis in rheumatoid arthritis: Evidence for a citrulline-biased immune response and medication effects
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Caitlyn L. Holmes, Fauzia Osman, Amy M. Bier, Christie M. Bartels, Chloe G. Peyton, Tobias Z. Donlon, and Miriam A. Shelef
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Bacterial Diseases ,Male ,0301 basic medicine ,Whooping Cough ,Bordetella pertussis ,Arthritis, Rheumatoid ,chemistry.chemical_compound ,0302 clinical medicine ,Medicine and Health Sciences ,Citrulline ,Public and Occupational Health ,Enzyme-Linked Immunoassays ,Pertussis Vaccine ,Vaccines ,Multidisciplinary ,Tetanus ,Antibody titer ,Vaccination and Immunization ,3. Good health ,Infectious Diseases ,Rheumatoid arthritis ,Medicine ,Female ,Immunosuppressive Agents ,Research Article ,medicine.drug ,Infectious Disease Control ,Adolescent ,Science ,Immunology ,Rheumatoid Arthritis ,Research and Analysis Methods ,Autoimmune Diseases ,03 medical and health sciences ,Immune system ,Rheumatology ,Pertussis ,Immunity ,medicine ,Humans ,Immunoassays ,030203 arthritis & rheumatology ,business.industry ,Arthritis ,Biology and Life Sciences ,medicine.disease ,Methotrexate ,030104 developmental biology ,chemistry ,Case-Control Studies ,Immunoglobulin G ,Immunologic Techniques ,Pertussis vaccine ,Clinical Immunology ,Preventive Medicine ,Clinical Medicine ,business - Abstract
BackgroundThe antibody response to pertussis vaccination in rheumatoid arthritis is unknown, a concerning omission given the relatively low efficacy of the pertussis vaccine, a rise in pertussis infections, and a general increased susceptibility to infection in rheumatoid arthritis. Additionally, the contributions from an intrinsically dysregulated immune system in rheumatoid arthritis and immune-suppressing medications to the response to pertussis vaccination is poorly defined. This study examines antibody titers against pertussis in vaccinated rheumatoid arthritis patients and controls as well as evaluates potential contributions from demographic factors, immune suppressing medications, and reactivity against citrullinated pertussis.MethodsSerum IgG titers against native and citrullinated pertussis and tetanus were quantified by enzyme-linked immunosorbent assay in rheumatoid arthritis subjects and controls who were vaccinated within 10 years. Titers were compared by t-test and percent immunity by Fisher's exact test. Multivariable logistic regression was used to identify clinical factors that correlate with native pertussis titers.ResultsCompared to controls, rheumatoid arthritis subjects had lower titers against pertussis, but not tetanus, and reduced immunity to pertussis. These results were even more prominent at 5-10 years post-vaccination, when rheumatoid arthritis patients had 50% lower titers than controls and 2.5x more rheumatoid arthritis subjects were not considered immune to pertussis. Multiple logistic regression demonstrated that female sex and methotrexate use, but not TNF inhibiting medications, correlated with reduced immunity to pertussis. Finally, rheumatoid arthritis patients had higher IgG titers against citrullinated pertussis than native pertussis.ConclusionsPertussis titers are lower in vaccinated rheumatoid arthritis patients with evidence for contributions from female sex, a citrulline-biased immune response, and methotrexate use.
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- 2019
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46. Label-Free Impedimetric Immunosensor for Nerve Growth Factor Protein Constructed Using an Automated Dispensing System
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Frank Davis, Stuart D. Collyer, Timothy R.J. Holford, Séamus P.J. Higson, and Joanne L. Holmes
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chemistry.chemical_compound ,Chromatography ,Nerve growth factor ,Chemistry ,Electrode ,Polyaniline ,Electrochemistry ,Nanotechnology ,Quartz crystal microbalance ,Ac impedance ,Analytical Chemistry ,Label free - Abstract
We describe the development, validation and optimisation of label-free immunosensors for Nerve Growth Factor (NGF) protein. Screen-printed carbon electrodes were electrochemically coated with polyaniline, and onto this antibodies to NGF were immobilised using electrostatic or neutravidin-biotin interactions. These were constructed manually or using an automated liquid dispensing system. QCM demonstrated deposition of individual layer stages and binding of NGF. Studies revealed clear increases in immunosensor impedance following antigen exposure. Automated methodologies produced sensors with lowered sample-to-sample variation. Affinity produced electrodes offered higher sensitivities than those produced utilising electrostatic interactions. NGF between 25–1000 pg mL−1 could be determined using the optimised sensor.
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- 2013
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47. Novel Flexible Enzyme Laminate-Based Sensor for Analysis of Lactate in Sweat
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Eva L. Tur-García, Stuart D. Collyer, Frank Davis, Joanne L. Holmes, Séamus P.J. Higson, and Hugh Barr
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TP ,chemistry.chemical_element ,Nanotechnology ,02 engineering and technology ,01 natural sciences ,law.invention ,Magazine ,law ,Materials Chemistry ,QD ,Electrical and Electronic Engineering ,Instrumentation ,Chromatography ,010401 analytical chemistry ,Metals and Alloys ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Amperometry ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Working range ,Membrane ,chemistry ,TA ,Covalent bond ,0210 nano-technology ,Selectivity ,Platinum ,Biosensor - Abstract
We present work towards a novel amperometric enzyme-based highly flexible biosensor for real-time and non-invasive monitoring of lactate in human sweat for the early detection of pressure ischemia onset. The core of the recognition system is a highly flexible laminate, comprising two highly porous polycarbonate membranes, which provide support for the lactate oxidase enzyme (LOD), immobilised via covalent cross-linking. A number of variables were assessed to attempt to optimise the sensors, such as membrane pore size, crosslinking time, crosslinking agent concentration and levels of incorporated enzyme. Oxidation of lactate produces H2O2, which is subsequently determined electrochemically. The transducer comprises a two-electrode system on a single highly flexible polycarbonate membrane, sputter-coated with gold and platinum to render it conductive. The sensor exhibits lactate selectivity with a working range of 0–70 mM, thus covering physiologically relevant concentrations for pressure ischemia and has been shown to be suitable for determination of lactate in PBS, synthetic sweat and diluted human sweat.
- Published
- 2016
48. ChemInform Abstract: Synthesis of Novel Hydroxymethyl-Substituted Fused Heterocycles
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Jane L. Holmes and null et al.
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chemistry.chemical_compound ,Chemistry ,Organic chemistry ,Hydroxymethyl ,General Medicine - Published
- 2016
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49. Topography of dyskinesias and torticollis evoked by inhibition of substantia nigra pars reticulata
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Mark Dubach, Patrick A. Forcelli, Angela L. Holmes, Ludise Malkova, Karen Gale, David Dybdal, and Michael Oppedisano
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Pars compacta ,business.industry ,Choreiform movement ,Bicuculline ,nervous system diseases ,Subthalamic nucleus ,chemistry.chemical_compound ,Globus pallidus ,nervous system ,Neurology ,Dyskinesia ,Muscimol ,chemistry ,Basal ganglia ,medicine ,Neurology (clinical) ,medicine.symptom ,business ,Neuroscience ,medicine.drug - Abstract
GABAergic neurons of the substantia nigra pars reticulata (SNpr) and globus pallidus pars interna (GPi) constitute the output pathways of the basal ganglia. In monkeys, choreiform limb dyskinesias have been described after inhibition of the GPi, but not the SNpr. Given the anatomical and functional similarities between these structures, we hypothesized that choreiform dyskinesias could be evoked by inhibition of an appropriate region within the SNpr. The GABAA receptor agonist, muscimol, was infused into various sites within the SNpr and the adjacent STN of freely moving macaques. The effect of the GABAA antagonist, bicuculline (BIC), was also examined. Muscimol (MUS) in SNpr evoked the following: (1) choreiform dyskinesias of the contralateral arm and/or leg from central and lateral sites; (2) contralaterally directed torticollis from central and posterior sites; and (3) contraversive quadrupedal rotation from anterior and lateral sites. MUS infusions into the adjacent SN pars compacta or STN were without effect, ruling out a contribution of drug spread to adjacent structures. BIC in SNpr induced ipsiversive postures without choreiform dyskinesia or torticollis, whereas in the STN, it evoked ballistic movements. This is the first report of choreiform dyskinesia evoked by inhibition of the SNpr. This highly site-specific effect was obtained from a restricted region within the SNpr distinct from that responsible for inducing torticollis. These results suggest that overactivity of different SNpr outputs mediates choreiform dyskinesia and torticollis. These abnormalities are symptoms of dystonia, Huntington's disease, and iatrogenic dyskinesias, suggesting that these conditions may result, in part, from a loss of function in SNpr efferent projections. © 2012 Movement Disorder Society
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- 2012
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50. Superior Colliculus Mediates Cervical Dystonia Evoked by Inhibition of the Substantia Nigra Pars Reticulata
- Author
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Karen Gale, Menna Teferra, Jacqueline T. DesJardin, Ashley L. Decker, Patrick A. Forcelli, Ludise Malkova, Elizabeth A. West, and Angela L. Holmes
- Subjects
Male ,Superior Colliculi ,Movement ,Substantia nigra ,Biology ,Bicuculline ,chemistry.chemical_compound ,medicine ,Animals ,GABA-A Receptor Agonists ,GABA-A Receptor Antagonists ,Postural Balance ,Torticollis ,Dystonia ,Analysis of Variance ,Muscimol ,GABAA receptor ,Drug Administration Routes ,General Neuroscience ,Superior colliculus ,Articles ,medicine.disease ,Macaca mulatta ,Magnetic Resonance Imaging ,Substantia Nigra ,Disease Models, Animal ,nervous system ,chemistry ,Disinhibition ,Head Movements ,Sensation Disorders ,GABAergic ,Female ,medicine.symptom ,Neuroscience ,medicine.drug - Abstract
Cervical dystonia (CD; spasmodic torticollis) can be evoked by inhibition of substantia nigra pars reticulata (SNpr) in the nonhuman primate (Burbaud et al., 1998; Dybdal et al., 2012). Suppression of GABAergic neurons that project from SNpr results in the disinhibition of the targets to which these neurons project. It therefore should be possible to prevent CD by inhibition of the appropriate nigral target region(s). Here we tested the hypothesis that the deep and intermediate layers of the superior colliculus (DLSC), a key target of nigral projections, are required for the emergence of CD. To test this hypothesis, we pretreated the DLSC of four macaques with the GABAAagonist muscimol to determine whether this treatment would prevent CD evoked by muscimol infusions in SNpr. Our data supported this hypothesis: inhibition of DLSC attenuated CD evoked by muscimol in SNpr in all four animals. In two of the four subjects, quadrupedal rotations were evoked by muscimol application into SNpr sites that were distinct from those that induced dystonia. We found that inhibition of DLSC did not significantly alter quadrupedal rotations, suggesting that this response is dissociable from the SNpr-evoked CD. Our results are the first to demonstrate a role of DLSC in mediating the expression of CD. Furthermore, these data reveal a functional relationship between SNpr and DLSC in regulating posture and movement in the nonhuman primate, raising the possibility that the nigrotectal pathway has potential as a target for therapeutic interventions for CD.
- Published
- 2012
- Full Text
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