7,105 results on '"Filip A"'
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2. What Happens When Two Radicals Meet? A Practical Approach to Free Radical Reaction Mechanisms
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Filip Stas?evic´, Z?iko Milanovic´, Jelena Tos?ovic´, Jelena Ðurdevic´ Nikolic´, and Svetlana Markovic´
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Molecular modeling can be used as an excellent teaching method for providing better insight into the mechanism of free radical reactions. Due to its highly visual nature, it can affect and improve students' perception and visualization of chemistry phenomena. The majority of chemistry students will know how to represent a reaction between two free radicals symbolically (either with electron pushing arrows or with the representation of the paired and unpaired electrons). However, the problem arises when they are asked to explain what happens between the radicals at the microscopic level. In some elementary chemical reactions the reactants and products differ in spin multiplicity. Thus, these reactions need to be described in terms of two-state reactivity. Such a reaction occurs on two spin surfaces and includes spin inversion along the reaction coordinate. In this work, we demonstrate a procedure that aims to explain the progression of a coupling reaction between two radicals yielding toluene. This example showcases how one singlet molecule can be obtained from two doublets. To verify the impact of molecular modeling on students' knowledge about free radical reactions, we conducted a study that involved 44 chemistry students. The three questionnaires, two knowledge tests (pretest and post-test), and one survey were carried out to obtain the data. The obtained data imply that this practical approach has a significant impact on students' knowledge and can help them to better understand the free radical reactions, particularly at the microscopic level.
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- 2022
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3. Histological and chemical view on parotid duct sialolithiasis in the Slovakian warmblood mare
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Korim, Filip, Revajová, Viera, Koľvek, Filip, Bujňák, Lukáš, Hreus, Sebastián, and Všianský, Dalibor
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- 2024
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4. A Finite State Method in the Performance Evaluation of the Bernoulli Serial Production Lines
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Neven Hadžić, Viktor Ložar, and Filip Abdulaj
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production system engineering ,Bernoulli production line ,serial production line ,analytical solution ,finite state method ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Research on the performance measure evaluation of Bernoulli serial production lines is presented in this paper. Important aspects of the modeling and analysis using transition systems within the Markovian framework are addressed, including analytical and approximation methods. The “dimensionality curse” problems of the large scale and dense transition systems in the production system engineering field are pointed out as one of the main research and development obstacles. In that respect, a new analytically-based finite state method is presented based on the proportionality property of the stationary probability distribution across the systems’ state space. Simple and differentiable expressions for the performance measures including the production rate, the work-in-process, and the probabilities of machine blockage and starvation are formulated. A finite state method’s accuracy and applicability are successfully validated by comparing the obtained results against the rigorous analytical solution.
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- 2020
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5. Nanosized Pinning Centers in the Rare Earth-Barium-Copper-Oxide Thin-Film Superconductors
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Filip Antončík, Ondřej Jankovský, Tomáš Hlásek, and Vilém Bartůněk
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HTS superconductors ,thin-films ,pinning ,nano-objects ,nanoparticles ,YBCO ,Chemistry ,QD1-999 - Abstract
Since the discovery of high-temperature superconductivity, significant progress in the fabrication of REBCO-based (Rare Earth Barium Copper mixed Oxides) thin-films superconductors has been achieved. In our review, we described the approaches and possibilities of the improvement of superconducting properties by the introduction of nanosized pinning centers. We focused on the synthesis and viability of the material for artificial pinning centers and methods used for the introduction of the pinning centers into superconducting REBCO-based thin-films. This article summarizes available materials and procedures regardless of the financial cost of the individual method. According to available literature, the most significant superconducting REBCO tapes can be obtained when a combination of 1D and 0D nanoparticles are used for nanoscale pinning.
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- 2020
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6. Magnesium Oxybromides MOB-318 and MOB-518: Brominated Analogues of Magnesium Oxychlorides
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Anna-Marie Lauermannová, Michal Lojka, Filip Antončík, David Sedmidubský, Milena Pavlíková, Zbyšek Pavlík, and Ondřej Jankovský
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magnesium oxybromides ,MOC ,chemical and phase composition ,morphology ,FT-IR analysis ,thermal stability ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The search for environmentally sustainable building materials is currently experiencing significant expansion. It is increasingly important to find new materials or reintroduce those that have been set aside to find a good replacement for Portland cement, which is widely used despite being environmentally insufficient and energy-intensive. Magnesium oxybromides, analogues to well-known magnesium oxychloride cements, fit both categories of new and reintroduced materials. In this contribution, two magnesium oxybromide phases were prepared and thoroughly analyzed. The stoichiometries of the prepared phases were 5Mg(OH)2∙MgBr2∙8H2O and 3Mg(OH)2∙MgBr2∙8H2O. The phase analysis was determined using X-ray diffraction. The morphology was analyzed with scanning and transmission electron microscopy. The chemical composition was studied using X-ray fluorescence and energy dispersive spectroscopy. Fourier transform infrared spectroscopy was also used. The thermal stability and the mechanism of the release of gasses linked to the heating process, such as water and hydrobromic acid evaporation, were analyzed using simultaneous thermal analysis combined with mass spectroscopy. The obtained results were compared with the data available for magnesium oxychlorides.
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- 2020
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7. Carbon Dioxide Uptake by MOC-Based Materials
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Ondřej Jankovský, Michal Lojka, Anna-Marie Lauermannová, Filip Antončík, Milena Pavlíková, Zbyšek Pavlík, and David Sedmidubský
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magnesium oxychloride cement ,moc phases ,carbonation ,co2 uptake ,carbon footprint ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In this work, carbon dioxide uptake by magnesium oxychloride cement (MOC) based materials is described. Both thermodynamically stable magnesium oxychloride phases with stoichiometry 3Mg(OH)2∙MgCl2∙8H2O (Phase 3) and 5Mg(OH)2∙MgCl2∙8H2O (Phase 5) were prepared. X-ray diffraction (XRD) measurements were performed to confirm the purity of the studied phases after 7, 50, 100, 150, 200, and 250 days. Due to carbonation, chlorartinite was formed on the surface of the examined samples. The Rietveld analysis was performed to calculate the phase composition and evaluate the kinetics of carbonation. The SEM micrographs of the sample surfaces were compared with those of the bulk to prove XRD results. Both MOC phases exhibited fast mineral carbonation and high maximum theoretical values of CO2 uptake capacity. The materials based on MOC cement can thus find use in applications where a higher concentration of CO2 in the environment is expected (e.g., in flooring systems and wall panels), where they can partially mitigate the harmful effects of CO2 on indoor air quality and contribute to the sustainability of the construction industry by means of reducing the carbon footprints of alternative building materials and reducing CO2 concentrations in the environment overall.
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- 2020
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8. Synthesis, Structure, and Thermal Stability of Magnesium Oxychloride 5Mg(OH)2∙MgCl2∙8H2O
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Adéla Jiříčková, Michal Lojka, Anna-Marie Lauermannová, Filip Antončík, David Sedmidubský, Milena Pavlíková, Martina Záleská, Zbyšek Pavlík, and Ondřej Jankovský
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magnesium oxychloride cement ,non-hydraulic binder ,moc phases ,kinetics of formation ,thermal stability ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Today, low-energy and low-carbon footprint alternatives to Portland cement are searched because of huge CO2 emissions coming from Portland clinker calcination. Because of some superior properties of magnesium oxychloride cement (MOC) and the lower carbon footprint of its production, MOC became an intensively studied material with high application potential for the design and development of construction products. In this contribution, magnesium oxychloride with stoichiometry 5Mg(OH)2∙MgCl2∙8H2O (Phase 5) was prepared and characterized. The kinetics of formation and the phase composition of the material were determined using X-ray diffraction and consequent Rietveld analysis. The morphology was studied by scanning electron microscopy, and the chemical composition was determined by both energy-dispersive spectroscopy and X-ray fluorescence. Moreover, the simultaneous thermal analysis in combination with mass spectroscopy and Fourier-transform infrared spectroscopy was employed to study the thermal stability. Using mass spectroscopy, we were able to clarify the mechanism of water and hydrochloric acid release, which was not previously reported. The observed structural and chemical changes induced by exposure of studied samples to elevated temperatures were linked with the measured residual macro and micro parameters, such as bulk density, specific density, porosity, water absorption, compressive strength, and pore size distribution. The Phase 5 revealed a needle-like crystalline morphology which formed rapidly and was almost completed after 96 h, resulting in relatively high material strength. The four-day compressive strength of magnesium oxychloride cement was similar to the 28-day compressive strength of Portland cement. The thermal stability of Phase 5 was low as the observed disruptive thermal processes were completed at temperatures lower than 470 °C.
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- 2020
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9. Carboxylic Acid Functionalization at the Meso-Position of the Bodipy Core and Its Influence on Photovoltaic Performance
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Filip Ambroz, Joanna L. Donnelly, Jonathan D. Wilden, Thomas J. Macdonald, and Ivan P. Parkin
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Dye-sensitized solar cells ,bodipy dye ,co-sensitization ,N719 dye ,photoelectrochemical cells ,Chemistry ,QD1-999 - Abstract
Two bodipy dyes with different carboxylic acids on the meso-position of the bodipy core were prepared and used to sensitize TiO2 photoelectrodes. On the basis of spectroscopic characterization, the photoelectrodes were used to fabricate photoelectrochemical cells (PECs) for solar light harvesting. Photovoltaic measurements showed that both bodipy dyes successfully sensitized PECs with short-circuit current densities (JSC) two-fold higher compared to the control. The increase in generated current was attributed to the gain in spectral absorbance due to the presence of bodipy. Finally, the influence of co-sensitization of bodipy and N719 dye was also investigated and photovoltaic device performance discussed.
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- 2019
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10. Novel Ansätze for stochastic coupled cluster
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Filip, Maria-Andreea and Thom, Alex
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Chemistry ,Theoretical chemistry ,Electronic structure theory ,Coupled cluster ,Monte Carlo algorithms ,Quantum computing - Abstract
This thesis presents the development of two new types of algorithms in the framework of Coupled Cluster Monte Carlo (CCMC). First, the CCMC paradigm is expanded to multireference coupled cluster (MRCC). The multireference CCMC (mr-CCMC) approach takes advantage of Monte Carlo methods' capacity to treat any cluster expansion with little additional algorithmic difficulty to encode a MRCC wavefunction based on a fully arbitrary reference space and cluster truncation level. The technique is shown to be highly accurate even in regimes where single-reference CC methods fail, while only incurring a linear increase in memory requirements. The mr-CCMC approach is further expanded to build upon a Configuration Interaction Quantum Monte Carlo (CIQMC) reference wavefunction for more rapid convergence. Two approximations to the mr-CCMC method are also defined by allowing partial relaxation of the reference wavefunction in the presence of contributions from the external space. These are shown to reduce noise and generally increase stability relative to the original method, at the cost of slightly increased energy errors. Secondly, stochastic versions of the unitary coupled cluster (UCC) method and its disen- tangled variant are developed. These methods are shown to agree with their deterministic counterparts and can be easily extended beyond the single and double excitations trunca- tion commonly employed deterministically. The new Unitary Coupled Cluster Monte Carlo (UCCMC) algorithm is then used as a classical pre-processing step to decrease the complex- ity of wavefunction parametrisations for the Variational Quantum Eigensolver (VQE). The method is successful in significantly reducing the quantum resources required for VQE while maintaining accuracy, opening a potential route to allow larger quantum chemical problems to be treated on near-term noisy intermediate-scale quantum (NISQ) devices. Finally, the new developements in this work are combined to obtain a unitary stochastic representation of a MRCC wavefunction. Both UCCMC and the disentangled approximation are amenable to extension to a multireference treatment. While the disentangled form becomes intractable for moderate system sizes, multireference UCCMC shows promising results in stereotypical multi-configurational test cases.
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- 2022
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11. No regioselectivity for the steroid [alpha]-face in cocrystallization of exemestane with aromatic cocrystal formers based on phenanthrene and pyrene
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Topic, Filip and Friscic, Tomislav
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Bruker AXS Inc. ,Hydrogen -- Comparative analysis ,Progesterone -- Comparative analysis ,Hydrogen bonding -- Comparative analysis ,Military bases -- Comparative analysis ,Chemistry - Abstract
The anti-cancer steroidal drug exemestane presents significantly different behavior in cocrystallization with arenes compared with the previously explored steroid progesterone. Mechanochemical and solution-based cocrystallization of exemestane with hydroxy derivatives of phenanthrene and pyrene leads to the formation of cocrystals exhibiting clear O-H***O type arene-steroid hydrogen bonds. So far, exemestane and 1-hydroxypyrene have been observed to form only one type of cocrystal, with the 1:1 stoichiometric ratio of the two components. However, there are two stoichiometric variations of the cocrystal of 9-hydroxyphenanthrene and exemestane, with the arene:steroid stoichiometric ratio of either 1:1 or 1:2. Importantly, although cocrystallization of progesterone with the same arene cocrystal formers was previously reported to take place regioselectively through [alpha]***[pi] contacts between the [alpha]-face of the steroid and the [pi]-electron surface of the arene, the herein explored cocrystals of exemestane reveal [alpha]***[pi] and [beta]***[pi] contacts, as well as sidewise interactions involving the arene [pi]-system and different edges of the steroid molecule. The loss of regioselectivity for the steroid [alpha]-face in cocrystallization with the two monohydroxylated arenes is tentatively explained by the highly positive electrostatic surface potential of the steroid [beta]-face and a diminished number of C-H groups on the [alpha]-face of exemestane compared with progesterone. Key words: cocrystal, steroid, self-assembly, crystal engineering, aromatic. Le medicament steroidien anticancereux exemestane, lors de la cocristallisation avec des arenes, presente un comportement substantiellement different de celui d'un autre steroide qui a ete explore auparavant, la progesterone. La cocristallisation mecanochimique et en solution de l'exemestane avec des derives hydroxyles du phenanthrene et du pyrene donne lieu a la formation de cocristaux presentant clairement des liaisons hydrogene de type O-H***O entre l'arene et le steroide. Bien que l'on ait observe jusqu'a maintenant un seul type de cocristal forme par l'exemestane et le 1-hydroxypyrene, dans des proportions staechiometriques de 1:1 des deux composants, nous constatons deux variations stc[epsilon]chiometriques du cocristal forme par le 9-hydroxyphenanthrene et l'exemestane, dans des proportions stc[epsilon]chiometriques soit de 1:1 ou de 1:2 de l'arene par rapport au steroide. Fait plus important encore, bien que la cocristallisation de la progesterone avec les memes partenaires de cocristallisation de type arene ait ete decrite precedemment dans la litterature comme se produisant de maniere regioselective par contacts [alpha]***[pi] entre la face [alpha] du steroide et les electrons [pi] de la surface de l'arene, les cocristaux d'exemestane explores dans les presents travaux revelent la presence non seulement de contacts [alpha]***[pi] et [beta]***[pi], mais aussi d'interactions laterales faisant intervenir le systeme [pi] de l'arene et differents contours de la molecule de steroide. Pour tenter d'expliquer la perte de regioselectivite de la face [alpha] du steroide lors de la cocristallisation avec les deux arenes monohydroxyles, nous avan[zeta]ons l'hypothese du potentiel electrostatique de surface de la face [beta] beaucoup plus positif pour l'exemestane comparativement a la progesterone, et du plus petit nombre de groupes C-H sur la face [alpha] de l'exemestane que sur celle de la progesterone. [Traduit par la Redaction] Mots-cles : cocristal, steroide, autoassemblage, ingenierie des cristaux, aromatique., Introduction Steroids, molecules based on a highly rigid fused-ring hydrocarbon backbone (Fig. 1a), are among the most important biological signaling molecules in medicine, pharmaceuticals, evolutionary biology, and other disciplines. (1-8) [...]
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- 2020
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12. Practical Two-Dimensional Liquid Chromatography in Drug Metabolism Studies and Bioanalysis
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Cuyckens, Filip
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Liquid chromatography ,Chemistry ,Science and technology - Abstract
Q. When did your laboratory start working with 2D-LC and when did you start using this technique routinely in your laboratory? What applications is it being used for? A: We [...]
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- 2020
13. Single‐particle electrophoresis for studying the adsorption of cationic polymers onto anionic particles
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Filip Strubbe, Kristiaan Neyts, Peter Dubruel, Íngrid Amer Cid, and Lenny Van Daele
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POLYACRYLAMIDE ,polymer ,Clinical Biochemistry ,electrophoretic mobility ,ATR FTIR SPECTROSCOPY ,single particle ,Science General ,POLYELECTROLYTE ADSORPTION ,Biochemistry ,Analytical Chemistry ,Chemistry ,MOLECULAR-WEIGHT ,kinetics ,electrophoresis ,polymer adsorption ,COLLOIDAL PARTICLE ,FLOCCULATION ,LATEX-PARTICLES ,SILICA ,CHARGE-DENSITY POLYCATION ,cationic polymers - Abstract
Understanding the adsorption of polymers onto particles is crucial for many technological and biomedical applications. Even though polymer adsorption on particles is a dynamic process, most experimental techniques can only study the adsorption indirectly, in equilibrium and on the ensemble level. New analysis methods are required to overcome these limitations. We investigated the use of single-particle electrophoresis to study the adsorption kinetics of cationic polymers onto anionic particles and compared the resulting data to a theoretical model. In this approach, the electrophoretic mobility of single polystyrene (PS) particles, exposed to different concentrations of poly(2-guanidinoethyl methacrylate), was measured as a function of time. The polymer adsorption leads to an electrophoretic mobility change of the PS particle over time, from the initial negative value to a positive value at equilibrium. By fitting the kinetics data to the Langmuir model, the adsorption rate, desorption rate and equilibrium constant were determined. Finally, the adsorption kinetics of several other polymers was investigated. This showed that the presented technique enables direct analysis and comparison of the kinetics of polymer adsorption on the single-particle level. This article is protected by copyright. All rights reserved.
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- 2022
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14. Ring-Opening Metathesis Polymerization for the Synthesis of Terpenoid-Based Pressure-Sensitive Adhesives
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Stéphanie Engelen, Martijn Droesbeke, Resat Aksakal, and Filip E. Du Prez
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CARYOPHYLLENE ,PLASTICS ,Inorganic Chemistry ,Chemistry ,Polymers and Plastics ,ROSIN ,Organic Chemistry ,GREEN ,Materials Chemistry ,PERFORMANCE ,MONOMER - Abstract
Pressure-sensitive adhesives (PSAs) made from norbornene-functionalized terpenoid-based monomers are reported as a possible alternative to the conventional petrochemically based PSAs. For this, tetrahydrogeranyl, menthyl, and isobornyl norbornenate monomers, with a renewable carbon content up to 72%, are synthesized and copolymerized via ring-opening metathesis polymerization (ROMP) with cyclooctadiene and 5-norbornene-2-carboxylic acid. ROMP enables a much faster and controlled polymerization process in comparison to free radical polymerization techniques when targeting high molecular weights and therefore unlocks a potential to design a unique class of PSA materials. The moduli at bonding and debonding frequencies of the obtained PSAs are plotted in the Chang classification system and are used to predict their adhesive performance. Tack and peel measurements indicate that the terpenoid-based norbornenate formulations show similar adhesive properties in comparison to the previously investigated acrylic counterparts.
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- 2022
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15. Simultaneous identification of viruses and viral variants with programmable DNA nanobait
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Milan Djordjevic, Stephen Baker, Filip Bošković, Michael Fairhead, Ulrich F. Keyser, Niklas Ermann, Alexander Ohmann, Jinbo Zhu, Ran Tivony, Mark Howarth, Kaikai Chen, Joana Pereira Dias, Mohammed F. Alawami, Bošković, Filip [0000-0001-7663-2408], Tivony, Ran [0000-0003-0331-9538], Ohmann, Alexander [0000-0003-3537-1074], Chen, Kaikai [0000-0003-3170-0336], Đorđević, Milan [0000-0001-6490-5042], Fairhead, Michael [0000-0001-5361-3933], Howarth, Mark [0000-0001-8870-7147], Keyser, Ulrich F [0000-0003-3188-5414], and Apollo - University of Cambridge Repository
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viruses ,Biomedical Engineering ,Bioengineering ,Computational biology ,Biology ,FOS: Health sciences ,medicine.disease_cause ,Virus ,Transcriptome ,Vaccine Related ,chemistry.chemical_compound ,Biodefense ,medicine ,Genetics ,Humans ,General Materials Science ,Electrical and Electronic Engineering ,Lung ,SARS-CoV-2 ,Prevention ,RNA ,COVID-19 ,3 Good Health and Well Being ,DNA ,Condensed Matter Physics ,Atomic and Molecular Physics, and Optics ,4.1 Discovery and preclinical testing of markers and technologies ,Emerging Infectious Diseases ,Infectious Diseases ,chemistry ,Infectious disease (medical specialty) ,FOS: Biological sciences ,Viruses ,Nucleic acid ,Pneumonia & Influenza ,RNA, Viral ,Identification (biology) ,Rhinovirus ,4 Detection, screening and diagnosis ,Infection - Abstract
Respiratory infections are the major cause of death from infectious disease worldwide. The clinical presentation of many respiratory viruses is indistinguishable; therefore, diagnostic approaches that can identify multiple pathogens are essential for patient management. We aimed to address this challenge with self-assembled DNA nanobait that can simultaneously identify multiple short RNA targets. The nanobait approach relies on specific target selection via toehold-mediated strand displacement and rapid read-out via nanopore sensing. Here, we show this platform can concurrently identify several common respiratory viruses, detecting a panel of short targets of viral nucleic acids from SARS-CoV-2, respiratory syncytial virus (RSV), rhinovirus, influenza, and parainfluenza. Our nanobait could be reprogrammed to discriminate viral variants, and we identified several key SARS-CoV-2 variants with single-nucleotide resolution. We increased assay specificity with bespoke nanobait that could identify numerous short RNA targets in the same viral sample in a complex background of the human transcriptome. Notably, we found that the sequence position in the viral RNA secondary structure is critical for nanobait design. Lastly, we show that nanobait could discriminate between samples extracted from oropharyngeal swabs from negative and positive SARS-CoV-2 patients using programmable target cleavage without pre-amplification. Our system allows for multiplexed identification of native RNA molecules, providing a new scalable approach for diagnostics of multiple respiratory viruses in a single assay.
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- 2023
16. Uni- and bidirectional rotation and speed control in chiral photonic micromotors powered by light
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Yera Ye. Ussembayev, Noah De Witte, Xiaohong Liu, Alberto Belmonte, Tom Bus, Sjoukje Lubach, Filip Beunis, Filip Strubbe, Albert P. H. J. Schenning, Kristiaan Neyts, Stimuli-responsive Funct. Materials & Dev., ICMS Core, EIRES Chem. for Sustainable Energy Systems, and Institute for Complex Molecular Systems
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microparticles ,optical torque ,Technology and Engineering ,optical tweezers ,General Chemistry ,actuators ,sensors ,Biomaterials ,Chemistry ,liquid crystals ,Physics and Astronomy ,optical ,tweezers ,General Materials Science ,Biotechnology - Abstract
Liquid crystalline polymers are attractive materials for untethered miniature soft robots. When they contain azo dyes, they acquire light-responsive actuation properties. However, the manipulation of such photoresponsive polymers at the micrometer scale remains largely unexplored. Here, uni- and bidirectional rotation and speed control of polymerized azo-containing chiral liquid crystalline photonic microparticles powered by light is reported. The rotation of these polymer particles is first studied in an optical trap experimentally and theoretically. The micro-sized polymer particles respond to the handedness of a circularly polarized trapping laser due to their chirality and exhibit uni- and bidirectional rotation depending on their alignment within the optical tweezers. The attained optical torque causes the particles to spin with a rotation rate of several hertz. The angular speed can be controlled by small structural changes, induced by ultraviolet (UV) light absorption. After switching off the UV illumination, the particle recovers its rotation speed. The results provide evidence of uni- and bidirectional motion and speed control in light-responsive polymer particles and offer a new way to devise light-controlled rotary microengines at the micrometer scale.
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- 2023
17. Global maps of soil temperature
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Winkler, Manuela, Plichta, Roman, Buysse, Pauline, Lohila, Annalea, Spicher, Fabien, Boeckx, Pascal, Wild, Jan, Feigenwinter, Iris, Olejnik, Janusz, Risch, Anita, Khuroo, Anzar, Lynn, Joshua, di Cella, Umberto, Schmidt, Marius, Urbaniak, Marek, Marchesini, Luca, Govaert, Sanne, Uogintas, Domas, Assis, Rafael, Medinets, Volodymyr, Abdalaze, Otar, Varlagin, Andrej, Dolezal, Jiri, Myers, Jonathan, Randall, Krystal, Bauters, Marijn, Jimenez, Juan, Stoll, Stefan, Petraglia, Alessandro, Mazzolari, Ana, Ogaya, Romà, Tyystjärvi, Vilna, Hammerle, Albin, Wipf, Sonja, Lorite, Juan, Fanin, Nicolas, Benavides, Juan, Scholten, Thomas, Yu, Zicheng, Veen, G., Treier, Urs, Candan, Onur, Bell, Michael, Hörtnagl, Lukas, Siebicke, Lukas, Vives-Ingla, Maria, Eugster, Werner, Grelle, Achim, Stemkovski, Michael, Theurillat, Jean-Paul, Matula, Radim, Dorrepaal, Ellen, Steinbrecher, Rainer, Alatalo, Juha, Fenu, Giuseppe, Arzac, Alberto, Homeier, Jürgen, Porro, Francesco, Robinson, Sharon, Ghosn, Dany, Haugum, Siri, Ziemblińska, Klaudia, Camargo, José, Zhao, Peng, Niittynen, Pekka, Liljebladh, Bengt, Normand, Signe, Dias, Arildo, Larson, Christian, Peichl, Matthias, Collier, Laura, Myers-Smith, Isla, Zong, Shengwei, Kašpar, Vít, Cooper, Elisabeth, Haider, Sylvia, von Oppen, Jonathan, Cutini, Maurizio, Benito-Alonso, José-Luis, Luoto, Miska, Klemedtsson, Leif, Higgens, Rebecca, Zhang, Jian, Speed, James, Nijs, Ivan, Macek, Martin, Steinwandter, Michael, Poyatos, Rafael, Niedrist, Georg, Curasi, Salvatore, Yang, Yan, Dengler, Jürgen, Géron, Charly, de Pablo, Miguel, Xenakis, Georgios, Kreyling, Juergen, Forte, Tai, Bailey, Joseph, Knohl, Alexander, Goulding, Keith, Wilkinson, Matthew, Kljun, Natascha, Roupsard, Olivier, Stiegler, Christian, Verbruggen, Erik, Wingate, Lisa, Lamprecht, Andrea, Hamid, Maroof, Rossi, Graziano, Descombes, Patrice, Hrbacek, Filip, Bjornsdottir, Katrin, Poulenard, Jérôme, Meeussen, Camille, Guénard, Benoit, Venn, Susanna, Dimarco, Romina, Man, Matěj, Scharnweber, Tobias, Chown, Steven, Pio, Casimiro, Way, Robert, Erickson, Todd, Fernández-Pascual, Eduardo, Pușcaș, Mihai, Orsenigo, Simone, Di Musciano, Michele, Enquist, Brian, Newling, Emily, Tagesson, Torbern, Kemppinen, Julia, Serra-Diaz, Josep, Gottschall, Felix, Schuchardt, Max, Pitacco, Andrea, Jump, Alistair, Exton, Dan, Carnicer, Jofre, Aschero, Valeria, Urban, Anastasiya, Daskalova, Gergana, Santos, Cinthya, Goeckede, Mathias, Bruna, Josef, Andrews, Christopher, Jónsdóttir, Ingibjörg, Casanova-Katny, Angélica, Moriana-Armendariz, Mikel, Ewers, Robert, Pärtel, Meelis, Sagot, Clotilde, Herbst, Mathias, De Frenne, Pieter, Milbau, Ann, Gobin, Anne, Alexander, Jake, Kopecký, Martin, Buchmann, Nina, Kotowska, Martyna, Puchalka, Radoslaw, Penuelas, Josep, Gigauri, Khatuna, Prokushkin, Anatoly, Moiseev, Pavel, Jentsch, Anke, Klisz, Marcin, Barrio, Isabel, Ammann, Christof, Panov, Alexey, Van Geel, Maarten, Finckh, Manfred, Vaccari, Francesco, Erschbamer, Brigitta, Backes, Amanda, Robroek, Bjorn, Campoe, Otávio, Ahmadian, Negar, Boike, Julia, Thomas, Haydn, Pastor, Ada, Smith, Stuart, Pauli, Harald, Kollár, Jozef, de Cássia Guimarães Mesquita, Rita, Michaletz, Sean, Fuentes-Lillo, Eduardo, Urban, Josef, Greenwood, Sarah, Lens, Luc, Van de Vondel, Stijn, Vitale, Luca, Remmele, Sabine, Naujokaitis-Lewis, Ilona, Meusburger, Katrin, Cremonese, Edoardo, Barros, Agustina, Bokhorst, Stef, Svátek, Martin, Allonsius, Camille, Høye, Toke, Smiljanic, Marko, Hik, David, Canessa, Rafaella, van den Hoogen, Johan, Altman, Jan, Björkman, Mats, Cesarz, Simone, Blonder, Benjamin, Kazakis, George, Opedal, Øystein, Assmann, Jakob, Tanentzap, Andrew, Sidenko, Nikita, le Maire, Guerric, Ursu, Tudor-Mihai, Montagnani, Leonardo, Muffler, Lena, Hederová, Lucia, Rubtsov, Alexey, Pauchard, Aníbal, Tielbörger, Katja, Sørensen, Mia, Crowther, Thomas, Remmers, Wolfram, Pitteloud, Camille, Zyryanov, Viacheslav, Nilsson, Matts, Bazzichetto, Manuele, Sallo-Bravo, Jhonatan, Moiseev, Dmitry, Spasojevic, Marko, Haase, Peter, Pearse, William, Tutton, Rosamond, Fazlioglu, Fatih, Siqueira, David, Ardö, Jonas, Nardino, Marianna, Tomaselli, Marcello, Pavelka, Marian, García, Rafael, Nosetto, Marcelo, Bon, Matteo, Semenchuk, Philipp, Choler, Philippe, Scott, Tony, Halbritter, Aud, Dušek, Jiří, Mackenzie, Roy, Stanisci, Angela, Nouvellon, Yann, Kovács, Bence, Haesen, Stef, Veenendaal, Elmar, Juszczak, Radoslaw, Verheijen, Frank, de Andrade, Ana, Verbeeck, Hans, Bader, Maaike, RENAULT, David, Zimmermann, Reiner, Ferlian, Olga, Medinets, Sergiy, Walz, Josefine, Rossi, Christian, Rocha, Adrian, Lembrechts, Jonas, Jactel, Hervé, Brum, Barbara, Aartsma, Peter, Kobler, Johannes, Eisenhauer, Nico, Bjerke, Jarle, Pellissier, Loïc, Ueyama, Masahito, Manca, Giovanni, Bahalkeh, Khadijeh, Meysman, Filip, Niessner, Armin, Curtis, Robin, Six, Johan, Saccone, Patrick, Wang, Runxi, Ahrends, Antje, Okello, Joseph, Kolle, Olaf, Portillo-Estrada, Miguel, Laska, Kamil, Freeman, Erika, Di Cecco, Valter, Ashcroft, Michael, Steinbauer, Klaus, Della Chiesa, Stefano, van den Brink, Liesbeth, Herberich, Maximiliane, Loubet, Benjamin, Barančok, Peter, Hermanutz, Luise, Souza, Bartolomeu, Contador, Tamara, Zhang, Zhaochen, Aerts, Rien, Stephan, Jörg, Chojnicki, Bogdan, Manco, Antonio, Larson, Keith, Mondoni, Andrea, Palaj, Andrej, Schmeddes, Jonas, Hepenstrick, Daniel, Järveoja, Järvi, Manise, Tanguy, Barthel, Matti, Marciniak, Felipe, Weigel, Robert, Rixen, Christian, Turtureanu, Pavel, Hoffrén, Raúl, Iwata, Hiroki, Vittoz, Pascal, Wedegärtner, Ronja, Penczykowski, Rachel, Phartyal, Shyam, Sitková, Zuzana, Nagy, Laszlo, Ujházy, Karol, Heinesch, Bernard, Berauer, Bernd, Ogée, Jérôme, Malfasi, Francesco, Greise, Caroline, Helfter, Carole, Mosedale, Jonathan, Senior, Rebecca, Magliulo, Enzo, Nuñez, Martin, García, María, Wohlfahrt, Georg, Carbognani, Michele, Thomas, Andrew, Eklundh, Lars, Erfanian, Mohammad, Villar, Luis, Maier, Regine, Dahlberg, C., Guglielmin, Mauro, Jucker, Tommaso, Kelly, Julia, Olesen, Jørgen, Lang, Simone, Tanneberger, Franziska, Gharun, Mana, Jackowicz-Korczynski, Marcin, Convey, Peter, Aalto, Juha, Scheffers, Brett, Ujházyová, Mariana, Andres, Christian, Arriga, Nicola, Smith-Tripp, Sarah, Kanka, Róbert, Dick, Jan, Leihy, Rachel, Van Meerbeek, Koenraad, Maclean, Ilya, Vangansbeke, Pieter, Pampuch, Timo, Čiliak, Marek, Guillemot, Joannès, Sarneel, Judith, Souza, José, Svoboda, Miroslav, Björk, Robert, Merinero, Sonia, Zellweger, Florian, Simpson, Elizabeth, Cannone, Nicoletta, Abedi, Mehdi, Seipel, Tim, Klinges, David, Máliš, František, Basham, Edmund, Sewerniak, Piotr, Schwartz, Naomi, Trouillier, Mario, Vandvik, Vigdis, Shekhar, Ankit, Munoz-Rojas, Miriam, Nicklas, Lena, Goded, Ignacio, Manolaki, Paraskevi, Radujković, Dajana, Yu, Kailiang, Phoenix, Gareth, Cifuentes, Edgar, Seeber, Julia, Deronde, Bart, Lenoir, Jonathan, Frei, Esther, Wilmking, Martin, Hylander, Kristoffer, Graae, Bente, Calzado, M., Wang, Yifeng, Hampe, Arndt, Somers, Ben, Mörsdorf, Martin, Jastrzebowski, Szymon, Ejtehadi, Hamid, Terrestrial Ecology (TE), Universidad de Alcalá. Departamento de Geología, Geografía y Medio Ambiente, BioGeoClimate Modelling Lab, Department of Geosciences and Geography, Helsinki Institute of Sustainability Science (HELSUS), Institute for Atmospheric and Earth System Research (INAR), Universiteit Antwerpen = University of Antwerpen [Antwerpen], Ecosystèmes, biodiversité, évolution [Rennes] (ECOBIO), Université de Rennes (UR)-Institut Ecologie et Environnement (INEE), Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Observatoire des Sciences de l'Univers de Rennes (OSUR), Université de Rennes (UR)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Rennes 2 (UR2)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Centre National de la Recherche Scientifique (CNRS), Ecologie fonctionnelle et écotoxicologie des agroécosystèmes (ECOSYS), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire d'Ecologie Alpine (LECA ), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA), LTSER Zone Atelier Alpes, Interactions Sol Plante Atmosphère (UMR ISPA), Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Ecologie fonctionnelle et biogéochimie des sols et des agro-écosystèmes (UMR Eco&Sols), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Département Performances des systèmes de production et de transformation tropicaux (Cirad-PERSYST), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Senckenberg Research Institute and Natural History Museum [Frankfurt], Senckenberg – Leibniz Institution for Biodiversity and Earth System Research - Senckenberg Gesellschaft für Naturforschung, Leibniz Association-Leibniz Association, Biodiversité, Gènes & Communautés (BioGeCo), Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Environnements, Dynamiques et Territoires de Montagne (EDYTEM), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS), Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), SILVA (SILVA), AgroParisTech-Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Ecologie et Dynamique des Systèmes Anthropisés - UMR CNRS 7058 (EDYSAN), Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS), 12P1819N, Fonds Wetenschappelijk Onderzoek, ANR-10-LABX-0045,COTE,COntinental To coastal Ecosystems: evolution, adaptability and governance(2010), ANR-13-ISV7-0004,ODYSSEE,De nouvelles voies pour la modélisation des dynamiques d'assemblages d'espèces intégrant l'écologie et l'évolution: le cas des écosystèmes de montagne des Alpes et des Carpates(2013), ANR-20-EBI5-0004,ASICS,ASsessing and mitigating the effects of climate change and biological Invasions on the spatial redistribution of biodiversity in Cold environmentS(2020), ANR-19-CE32-0005,IMPRINT,IMpacts des PRocessus mIcroclimatiques sur la redistributioN de la biodiversiTé forestière en contexte de réchauffement du macroclimat(2019), European Project: 774124 , H2020,H2020-SFS-2017-2,SUPER-G (2018), European Project: 282910,EC:FP7:ENV,FP7-ENV-2011,ECLAIRE(2011), European Project: 641918,H2020,H2020-SC5-2014-two-stage,AfricanBioServices(2015), European Project: 678841,H2020,ERC-2015-STG,NICH(2016), European Project: 871128,eLTER PLUS (2020), European Project: 861974, H2020,SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy,SustainSahel(2020), Lembrechts, Jonas J [0000-0002-1933-0750], van den Hoogen, Johan [0000-0001-6624-8461], Aalto, Juha [0000-0001-6819-4911], De Frenne, 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Liljebladh, Bengt [0000-0002-2998-5865], Lohila, Annalea [0000-0003-3541-672X], Lorite, Juan [0000-0003-4617-8069], Loubet, Benjamin [0000-0001-8825-8775], Lynn, Joshua [0000-0002-7190-7991], Macek, Martin [0000-0002-5609-5921], Mackenzie, Roy [0000-0001-6620-1532], Magliulo, Enzo [0000-0001-5505-6552], Maier, Regine [0000-0003-3158-4136], Malfasi, Francesco [0000-0002-2660-8327], Máliš, František [0000-0003-2760-6988], Man, Matěj [0000-0002-4557-8768], Manca, Giovanni [0000-0002-9376-0310], Manco, Antonio [0000-0002-3677-4134], Manolaki, Paraskevi [0000-0003-3958-0199], Matula, Radim [0000-0002-7460-0100], Medinets, Sergiy [0000-0001-5980-1054], Medinets, Volodymyr [0000-0001-7543-7504], Meeussen, Camille [0000-0002-5869-4936], Merinero, Sonia [0000-0002-1405-6254], Mesquita, Rita de Cássia Guimarães [0000-0003-1746-3215], Meusburger, Katrin [0000-0003-4623-6249], Meysman, Filip JR [0000-0001-5334-7655], Michaletz, Sean T [0000-0003-2158-6525], Milbau, Ann [0000-0003-3555-8883], Moiseev, Pavel [0000-0003-4808-295X], Mondoni, Andrea [0000-0002-4605-6304], Montagnani, Leonardo [0000-0003-2957-9071], Moriana-Armendariz, Mikel [0000-0001-8251-1338], Morra di Cella, Umberto [0000-0003-4250-9705], Mörsdorf, Martin [0000-0002-3903-2021], Mosedale, Jonathan R [0000-0001-9008-5439], Muffler, Lena [0000-0001-8227-7297], Muñoz-Rojas, Miriam [0000-0002-9746-5191], Myers, Jonathan A [0000-0002-2058-8468], Myers-Smith, Isla H [0000-0002-8417-6112], Nardino, Marianna [0000-0001-9466-8340], Naujokaitis-Lewis, Ilona [0000-0001-9504-4484], Nicklas, Lena [0000-0002-9337-4153], Niedrist, Georg [0000-0002-7511-6273], Nilsson, Mats B [0000-0003-3765-6399], Normand, Signe [0000-0002-8782-4154], Nosetto, Marcelo D [0000-0002-9428-490X], Nouvellon, Yann [0000-0003-1920-3847], Nuñez, Martin A [0000-0003-0324-5479], Ogaya, Romà [0000-0003-4927-8479], Ogée, Jérôme [0000-0002-3365-8584], Okello, Joseph [0000-0003-4462-3923], Olejnik, Janusz [0000-0001-5305-1045], Olesen, Jørgen Eivind [0000-0002-6639-1273], Opedal, Øystein H [0000-0002-7841-6933], Orsenigo, Simone [0000-0003-0348-9115], Palaj, Andrej [0000-0001-7054-4183], Pampuch, Timo [0000-0002-6290-9661], Pärtel, Meelis [0000-0002-5874-0138], Pastor, Ada [0000-0002-7114-770X], Pauchard, Aníbal [0000-0003-1284-3163], Pauli, Harald [0000-0002-9842-9934], Pavelka, Marian [0000-0002-7339-3410], Pearse, William D [0000-0002-6241-3164], Peichl, Matthias [0000-0002-9940-5846], Penczykowski, Rachel M [0000-0003-4559-0609], Penuelas, Josep [0000-0002-7215-0150], Petit Bon, Matteo [0000-0001-9829-8324], Petraglia, Alessandro [0000-0003-4632-2251], Phartyal, Shyam S [0000-0003-3266-6619], Phoenix, Gareth K [0000-0002-0911-8107], Pio, Casimiro [0000-0002-3531-8620], Pitacco, Andrea [0000-0002-7260-6242], Pitteloud, Camille [0000-0002-4731-0079], Plichta, Roman [0000-0003-2442-8522], Porro, Francesco [0000-0001-9855-2468], Portillo-Estrada, Miguel [0000-0002-0348-7446], Poulenard, Jérôme [0000-0003-0810-0308], Poyatos, Rafael [0000-0003-0521-2523], Prokushkin, Anatoly S [0000-0001-8721-2142], Puchalka, Radoslaw [0000-0002-4764-0705], Pușcaș, Mihai [0000-0002-2632-640X], Radujković, Dajana [0000-0003-4981-5879], Randall, Krystal [0000-0003-2507-1000], Ratier Backes, Amanda [0000-0002-7229-578X], Renault, David [0000-0003-3644-1759], Risch, Anita C [0000-0003-0531-8336], Rixen, Christian [0000-0002-2486-9988], Robinson, Sharon A [0000-0002-7130-9617], Robroek, Bjorn JM [0000-0002-6714-0652], Rocha, Adrian V [0000-0002-4618-2407], Rossi, Graziano [0000-0002-5102-5019], Roupsard, Olivier [0000-0002-1319-142X], Rubtsov, Alexey V [0000-0002-9663-4344], Saccone, Patrick [0000-0001-8820-593X], Sallo Bravo, Jhonatan [0000-0001-9007-4959], Santos, Cinthya C [0000-0001-7042-5993], Sarneel, Judith M [0000-0001-6187-499X], Scharnweber, Tobias [0000-0002-4933-5296], Schmidt, Marius [0000-0001-5292-7092], Scholten, Thomas [0000-0002-4875-2602], Schuchardt, Max [0000-0003-3103-8063], Scott, Tony [0000-0002-6631-0672], Seeber, Julia [0000-0003-0189-7377], Seipel, Tim [0000-0001-6472-2975], Semenchuk, Philipp [0000-0002-1949-6427], Senior, Rebecca A [0000-0002-8208-736X], Serra-Diaz, Josep M [0000-0003-1988-1154], Sewerniak, Piotr [0000-0002-3071-3963], Shekhar, Ankit [0000-0003-0802-2821], Siegwart Collier, Laura [0000-0003-0985-9615], Simpson, Elizabeth [0000-0002-6107-0286], Siqueira, David P [0000-0002-0756-0153], Sitková, Zuzana [0000-0001-6354-6105], Six, Johan [0000-0001-9336-4185], Smiljanic, Marko [0000-0002-2324-0723], Smith, Stuart W [0000-0001-9396-6610], Somers, Ben [0000-0002-7875-107X], Souza, José João LL [0000-0003-4670-6626], Souza, Bartolomeu Israel [0000-0003-2173-8314], Souza Dias, Arildo [0000-0002-5495-3435], Spasojevic, Marko J [0000-0003-1808-0048], Speed, James DM [0000-0002-0633-5595], Spicher, Fabien [0000-0002-9999-955X], Stanisci, Angela [0000-0002-5302-0932], Steinbauer, Klaus [0000-0002-3730-9920], Steinbrecher, Rainer [0000-0002-5931-4210], Steinwandter, Michael [0000-0001-8545-6047], Stemkovski, Michael [0000-0002-9854-887X], Stephan, Jörg G [0000-0001-6195-7867], Stiegler, Christian [0000-0002-0130-2401], Stoll, Stefan [0000-0002-3656-417X], Svátek, Martin [0000-0003-2328-4627], Svoboda, Miroslav [0000-0003-4050-3422], Tagesson, Torbern [0000-0003-3011-1775], Tanentzap, Andrew J [0000-0002-2883-1901], Tanneberger, Franziska [0000-0002-4184-9671], Theurillat, Jean-Paul [0000-0002-1843-5809], Thomas, Haydn JD [0000-0001-9099-6304], Thomas, Andrew D [0000-0002-1360-1687], Tomaselli, Marcello [0000-0003-4208-3433], Treier, Urs Albert [0000-0003-4027-739X], Trouillier, Mario [0000-0001-9151-7686], Turtureanu, Pavel Dan [0000-0002-7422-3106], Tyystjärvi, Vilna A [0000-0002-1175-5463], Ueyama, Masahito [0000-0002-4000-4888], Ujházy, Karol [0000-0002-0228-1737], Ujházyová, Mariana [0000-0002-5546-1547], Uogintas, Domas [0000-0002-3937-1218], Urban, Josef [0000-0003-1730-947X], Urbaniak, Marek [0000-0002-1225-9170], Ursu, Tudor-Mihai [0000-0002-4898-6345], Vaccari, Francesco Primo [0000-0002-5253-2135], Van de Vondel, Stijn [0000-0002-0223-7330], van den Brink, Liesbeth [0000-0003-0313-8147], Van Geel, Maarten [0000-0001-8688-6225], Vandvik, Vigdis [0000-0003-4651-4798], Vangansbeke, Pieter [0000-0002-6356-2858], Varlagin, Andrej [0000-0002-2549-5236], Veen, GF [0000-0001-7736-9998], Veenendaal, Elmar [0000-0001-8230-2501], Venn, Susanna E [0000-0002-7433-0120], Verbeeck, Hans [0000-0003-1490-0168], Verbrugggen, Erik [0000-0001-7015-1515], Verheijen, Frank GA [0000-0001-6741-4249], Vitale, Luca [0000-0002-7637-264X], Vittoz, Pascal [0000-0003-4218-4517], Vives-Ingla, Maria [0000-0003-4887-8392], von Oppen, Jonathan [0000-0001-6346-2964], Walz, Josefine [0000-0002-0715-8738], Wang, Runxi [0000-0003-4902-169X], Wang, Yifeng [0000-0003-2660-7874], Way, Robert G [0000-0003-4763-7685], Wedegärtner, Ronja EM [0000-0003-4633-755X], Weigel, Robert [0000-0001-9685-6783], Wild, Jan [0000-0003-3007-4070], Wilkinson, Matthew [0000-0002-3858-553X], Wilmking, Martin [0000-0003-4964-2402], Wingate, Lisa [0000-0003-1921-1556], Winkler, Manuela [0000-0002-8655-9555], Wipf, Sonja [0000-0002-3492-1399], Wohlfahrt, Georg [0000-0003-3080-6702], Xenakis, Georgios [0000-0002-2950-4101], Yang, Yan [0000-0003-0858-7603], Yu, Zicheng [0000-0003-2358-2712], Yu, Kailiang [0000-0003-4223-5169], Zellweger, Florian [0000-0003-1265-9147], Zhang, Jian [0000-0003-0589-6267], Zhao, Peng [0000-0003-3289-5067], Ziemblińska, Klaudia [0000-0003-4070-6553], Zimmermann, Reiner [0000-0002-8724-941X], Zong, Shengwei [0000-0002-3583-6110], Zyryanov, Viacheslav I [0000-0002-1748-4801], Nijs, Ivan [0000-0003-3111-680X], Lenoir, Jonathan [0000-0003-0638-9582], Apollo - University of Cambridge Repository, Department of Biology (University of Antwerp), and University of Antwerp (UA)
- Subjects
0106 biological sciences ,Zoology and botany: 480 [VDP] ,Q1 ,01 natural sciences ,Global map ,SDG 13 - Climate Action ,Soil temperature ,Zone climatique ,bepress|Physical Sciences and Mathematics|Environmental Sciences ,bioclimatic variables ,global maps ,microclimate ,near-surface temperatures ,soil temperature ,soil-dwelling organisms ,temperature offset ,weather stations ,ComputingMilieux_MISCELLANEOUS ,General Environmental Science ,Global and Planetary Change ,GB ,Geology ,PE&RC ,6. Clean water ,Near-surface soil temperature ,international ,[SDE]Environmental Sciences ,551: Geologie und Hydrologie ,Plantenecologie en Natuurbeheer ,Température du sol ,Near-surface temperature ,Near-surface temperatures ,Biologie ,P40 - Météorologie et climatologie ,bepress|Physical Sciences and Mathematics|Earth Sciences ,MITIGATION ,bepress|Life Sciences|Ecology and Evolutionary Biology ,bepress|Physical Sciences and Mathematics|Oceanography and Atmospheric Sciences and Meteorology|Climate ,Bioclimatic variables ,Settore BIO/07 - ECOLOGIA ,577: Ökologie ,Biology ,Ecosystem ,Ekologi ,Changement climatique ,Cartographie ,Biology and Life Sciences ,Microclimate ,15. Life on land ,bepress|Physical Sciences and Mathematics|Environmental Sciences|Environmental Monitoring ,Agriculture and Soil Science ,0401 agriculture, forestry, and fisheries ,Temperature offset ,Weather stations ,Plan_S-Compliant-OA ,Soil ,bepress|Life Sciences ,ddc:550 ,Geología ,Ecology ,Temperature ,04 agricultural and veterinary sciences ,Biological Sciences ,FOREST ,Weather station ,Variation saisonnière ,Chemistry ,Bioclimatologie ,bepress|Physical Sciences and Mathematics ,1171 Geosciences ,Technology and Engineering ,Climate Change ,Plant Ecology and Nature Conservation ,MOISTURE ,LITTER DECOMPOSITION ,PERMAFROST ,ddc:570 ,SUITABILITY ,G1 ,bepress|Physical Sciences and Mathematics|Oceanography and Atmospheric Sciences and Meteorology ,Global maps ,VDP::Mathematics and natural scienses: 400::Zoology and botany: 480 ,Environmental Chemistry ,Zoologiske og botaniske fag: 480 [VDP] ,Soil-dwelling organisms ,Aquatic Ecology ,P30 - Sciences et aménagement du sol ,Bioclimatic variable ,SNOW-COVER ,bepress|Physical Sciences and Mathematics|Earth Sciences|Soil Science ,Earth sciences ,PLANT-RESPONSES ,CLIMATIC CONTROLS ,Soil-dwelling organism ,13. Climate action ,Earth and Environmental Sciences ,VDP::Matematikk og naturvitenskap: 400::Zoologiske og botaniske fag: 480 ,040103 agronomy & agriculture ,Réchauffement global ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Environmental Sciences ,010606 plant biology & botany - Abstract
JJL received funding from the Research Foundation Flanders (grant nr. 12P1819N). The project received funding from the Research Foundation Flanders (grants nrs, G018919N, W001919N). JVDH and TWC received funding from DOB Ecology. JA received funding from the University of Helsinki, Faculty of Science (MICROCLIM, grant nr. 7510145) and Academy of Finland Flagship (grant no. 337552). PDF, CM and PV received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme (ERC Starting Grant FORMICA 757833). JK received funding from the Arctic Interactions at the University of Oulu and Academy of Finland (318930, Profi 4), Maaja vesitekniikan tuki ry., Tiina and Antti Herlin Foundation, Nordenskiold Samfundet and Societas pro Fauna et Flora Fennica. MK received funding from the Czech Science Foundation (grant nr. 20-28119S) and the Czech Academy of Sciences (grant nr. RVO 67985939). TWC received funding from National Geographic Society grant no. 9480-14 and WW-240R-17. MA received funding from CISSC (program ICRP (grant nr:2397) and INSF (grant nr: 96005914). The Royal Botanic Garden Edinburgh is supported by the Scottish Government's Rural and Environment Science and Analytical Services Division. JMA received funding from the Funding Org. Qatar Petroleum (grant nr. QUEX-CAS-QP-RD-18/19). JMA received funding from the European Union's Horizon 2020 research and innovation program (grant no. 678841) and from the Swiss National Science Foundation (grant no. 31003A_176044). JA was supported by research grants LTAUSA19137 (program INTER-EXCELLENCE, subprogram INTER-ACTION) provided by Czech Ministry of Education, Youth and Sports and 20-05840Y of the Czech Science Foundation. AA was supported by the Ministry of Science and Higher Education of the Russian Federation (grant FSRZ-2020-0014). SN, UAT, JJA, and JvO received funding from the Independent Research Fund Denmark (7027-00133B). LvdB, KT, MYB and RC acknowledge funding from the German Research Foundation within the Priority Program SPP-1803 'EarthShape: Earth Surface Shaping by Biota' (grant TI 338/14-1&2 and BA 3843/6-1). PB was supported by grant project VEGA of the Ministry of Education of the Slovak Republic and the Slovak Academy of Sciences No. 2/0132/18. Forest Research received funding from the Forestry Commission (climate change research programme). JCB acknowledges the support of Universidad Javeriana. JLBA received funding from the Direccion General de Cambio Climatico del Gobierno de Aragon; JLBA acknowledges fieldwork assistance by Ana Acin, the Ordesa y Monte Perdido National Park, and the Servicio de Medio Ambiente de Soria de la Junta de Castilla y Leon. RGB and MPB received funding from BECC - Biodiversity and Ecosystem services in a Changing Climate. MPB received funding from The European Union's Horizon 2020 research and innovation program under the Marie Skodowska-Curie Grant Agreement No. 657627 and The Swedish Research Council FORMAS - future research leaders No. 2016-01187. JB received funding from the Czech Academy of Sciences (grant nr. RVO 67985939). NB received funding from the SNF (grant numbers 40FA40_154245, 20FI21_148992, 20FI20_173691, 407340_172433) and from the EU (contract no. 774124). ICOS EU research infrastructure. EU FP7 NitroEurope. EU FP7 ECLAIRE. The authors from Biological Dynamics of Forest Fragments Project, PDBFF, Instituto Nacional de Pesquisas da Amazonia, Brazil were supported by the MCTI/CNPq/FNDCT - AcAo Transversal no68/2013 - Programa de Grande Escala da Biosfera-Atmosfera na Amazonia - LBA; Project 'Como as florestas da Amazonia Central respondem as variacoes climaticas? Efeitos sobre dinamica florestal e sinergia com a fragmentacAo florestal'. This is the study 829 of the BDFFP Technical Series. to The EUCFLUX Cooperative Research Program and Forest Science and Research Institute-IPEF. NC acknowledges funding by Stelvio National Park. JC was funded by the Spanish government grant CGL2016-78093-R. ANID-FONDECYT 1181745 AND INSTITUTO ANTARTICO CHILENO (INACH FR-0418). SC received funding from the German Research Foundation (grant no. DFG- FZT 118, 202548816). The National Science Foundation, Poland (grant no. UMO-2017/27/B/ST10/02228), within the framework of the 'Carbon dioxide uptake potential of sphagnum peatlands in the context of atmospheric optical parameters and climate changes' (KUSCO2) project. SLC received funding from the South African National Research Foundation and the Australian Research Council. FM, M, KU and MU received funding from Slovak Research and Development Agency (no. APVV-19-0319). Instituto Antartico Chileno (INACH_RT-48_16), Iniciativa Cientifica Milenio Nucleo Milenio de Salmonidos Invasores INVASAL, Institute of Ecology and Biodiversity (IEB), CONICYT PIA APOYO CCTE AFB170008. PC is supported by NERC core funding to the BAS 'Biodiversity, Evolution and Adaptation Team. EJC received funding from the Norwegian Research Council (grant number 230970). GND was supported by NERC E3 doctoral training partnership grant (NE/L002558/1) at the University of Edinburgh and the Carnegie Trust for the Universities of Scotland. Monitoring stations on Livingston Island, Antarctica, were funded by different research projects of the Gobern of Spain (PERMAPLANET CTM2009-10165-E; ANTARPERMA CTM2011-15565-E; PERMASNOW CTM2014-52021-R), and the PERMATHERMAL arrangement between the University of Alcala and the Spanish Polar Committee. GN received funding from the Autonomous Province of Bolzano (ITA). The infrastructure, part of the UK Environmental Change Network, was funded historically in part by ScotNature and NERC National Capability LTS-S: UK-SCAPE; NE/R016429/1). JD was supported by the Czech Science Foundation (GA17-19376S) and MSMT (LTAUSA18007). ED received funding from the Kempe Foundation (JCK-1112 and JCK-1822). The infrastructure was supported by the Ministry of Education, Youth and Sports of the Czech Republic within the National Sustainability Programme I (NPU I), grant number LO1415 and by the project for national infrastructure support CzeCOS/ICOS Reg. No. LM2015061. NE received funding from the German Research Foundation (DFG- FZT 118, 202548816). BE received funding from the GLORIA-EU project no EVK2-CT2000-00056, the Autonomous Province of Bolzano (ITA), from the Tiroler Wissenschaftsfonds and from the University of Innsbruck. RME was supported by funding to the SAFE Project from the Sime Darby Foundation. OF received funding from the German Research Foundation (DFG- FZT 118, 202548816). EFP was supported by the Jardin Botanico Atlantico (SV-20-GIJON-JBA). MF was funded by the German Federal Ministry of Education and Research (BMBF) in the context of The Future Okavango (Grant No. 01LL0912) and SASSCAL (01LG1201M; 01LG1201N) projects. EFL received funding from ANID PIA / BASAL FB210006. RAG received funding from Fondecyt 11170516, CONICYT PIA AFB170008 and ANID PIA / BASAL FB210006. MBG received funding from National Parks (DYNBIO, #1656/2015) and The Spanish Research Agency (VULBIMON, #CGL2017-90040-R). MG received funding from the Swiss National Science Foundation (ICOS-CH Phase 2 20FI20_173691). FG received funding from the German Research Foundation (DFG- FZT 118, 202548816). KG and TS received funding from the UK Biotechnology and Biological Research Council (grant = 206/D16053). SG was supported by the Research Foundation Flanders (FWO) (project G0H1517N). KJ and PH received funding from the EU Horizon2020 INFRAIA project eLTER-PLUS (871128), the project LTER-CWN (FFG, F&E Infrastrukturforderung, project number 858024) and the Austrian Climate Research Program (ACRP7 - CentForCSink - KR14AC7K11960). SH and ARB received funding through iDiv funded by the German Research Foundation (DFG- FZT 118, 202548816). LH received funding from the Czech Science Foundation (grant nr. 20-28119S) and the Czech Academy of Sciences (grant nr. RVO 67985939). MH received funding from the Baden-Wurttemberg Ministry of Science, Research and Arts via the project DRIeR (Drought impacts, processes and resilience: making the in-visible visible). LH received funding from International Polar Year, Weston Foundation, and ArcticNet. DH received funding from Natural Sciences and Engineering Council (Canada) (RGPIN-06691). TTH received funding from Independent Research Fund Denmark (grant no. 8021-00423B) and Villum Foundation (grant no. 17523). Ministry of Education, Youth and Sports of the Czech Republic (projects LM2015078, VAN2020/01 and CZ.02.1.01/0.0/0.0/16_013/0001708). KH, CG and CJD received funding from Bolin Centre for Climate Research, Stockholm University and from the Swedish research council Formas [grant n:o 2014-00530 to KH]. JJ received funding from the Funding Org. Swedish Forest Society Foundation (grant nr. 2018-485-Steg 2 2017) and Swedish Research Council FORMAS (grant nr. 2018-00792). AJ received funding from the German Federal Ministry of Education and Research BMBF (Grant Nr. FKZ 031B0516C SUSALPS) and the Oberfrankenstiftung (Grant Nr. OFS FP00237). ISJ received funding from the Energy Research Fund (NYR-11 - 2019, NYR-18 - 2020). TJ was supported by a UK NERC Independent Research Fellowship (grant number: NE/S01537X/1). RJ received funding from National Science Centre of Poland (grant number: 2016/21/B/ST10/02271) and Polish National Centre for Research and Development (grant number: Pol-Nor/203258/31/2013). VK received funding from the Czech Academy of Sciences (grant nr. RVO 67985939). AAK received funding from MoEFCC, Govt of India (AICOPTAX project F. No. 22018/12/2015/RE/Tax). NK received funding from FORMAS (grants nr. 2018-01781, 2018-02700, 2019-00836), VR, support from the research infrastructure ICOS-SE. BK received funding from the National Research, Development and Innovation Fund of Hungary (grant nr. K128441). Ministry of Education, Youth and Sports of the Czech Republic (projects LM2015078 and CZ.02.1.01/0.0/0.0/16_013/0001708). Project B1-RNM-163-UGR-18-Programa Operativo FEDER 2018, partially funded data collection. Norwegian Research Council (NORKLIMA grants #184912 and #244525) awarded to Vigdis Vandvik. MM received funding from the Czech Science Foundation (grant nr. 20-28119S) and the Czech Academy of Sciences (grant nr. RVO 67985939). Project CONICYT-PAI 79170119 and ANID-MPG 190029 awarded to Roy Mackenzie. This work was partly funded by project MIUR PON Cluster OT4CLIMA. RM received funding from the SNF project number 407340_172433. FM received funding from the Stelvio National Park. PM received funding from AIAS-COFUND fellowship programme supported by the Marie Skodowska- Curie actions under the European Union's Seventh Framework Pro-gramme for Research, Technological development and Demonstration (grant agreement no 609033) and the Aarhus University Research Foundation, Denmark. RM received funding from the Ministry of Education, Youth and Sports of the Czech Republic (project LTT17033). SM and VM received funding from EU FP6 NitroEurope (grant nr. 17841), EU FP7 ECLAIRE (grant nr. 282910), the Ministry of Education and Science of Ukraine (projects nr. 505, 550, 574, 602), GEF-UNEP funded "Toward INMS" project (grant nr. NEC05348) and ENI CBC BSB PONTOS (grant nr. BSB 889). The authors from Biological Dynamics of Forest Fragments Project, PDBFF, Instituto Nacional de Pesquisas da Amazonia, Brazil were supported by the MCTI/CNPq/FNDCT - AcAo Transversal no68/2013 - Programa de Grande Escala da Biosfera-Atmosfera na Amazonia - LBA; Project 'Como as florestas da Amazonia Central respondem as variacoes climaticas? Efeitos sobre dinamica florestal e sinergia com a fragmentacAo florestal'. FJRM was financially supported by the Netherlands Organization for Scientific Research (VICI grant 016.VICI.170.072) and Research Foundation Flanders (FWO-SBO grant S000619N). STM received funding from New Frontiers in Research Fund-Exploration (grant nr. NFRF-2018-02043) and NSERC Discovery. MMR received funding from the Australian Research Council Discovery Early Career Research Award (grant nr. DE180100570). JAM received funding from the National Science Foundation (DEB 1557094), International Center for Advanced Renewable Energy and Sustainability (I-CARES) at Washington University in St. Louis, ForestGEO, and Tyson Research Center. IM-S was funded by the UK Natural Environment Research Council through the ShrubTundra Project (NE/M016323/1). MBN received funding from FORMAS, VR, Kempe Foundations support from the research infrastructures ICOS and SITES. MDN received funding from CONICET (grant nr. PIP 112-201501-00609). Spanish Ministry of Science grant PID2019-110521GB-I00 and Catalan government grant 2017-1005. French National Research Agency (ANR) in the frame of the Cluster of Excellence COTE (project HydroBeech, ANR-10-LABX-45). VLIR-OUS, under the Institutional University Coorperation programme (IUC) with Mountains of the Moon University. Project LAS III 77/2017/B entitled: \"Estimation of net carbon dioxide fluxes exchanged between the forest ecosystem on post-agricultural land and between the tornado-damaged forest area and the atmosphere using spectroscopic and numerical methods\", source of funding: General Directorate of State Forests, Warsaw, Poland. Max Planck Society (Germany), RFBR, Krasnoyarsk Territory and Krasnoyarsk Regional Fund of Science, project number 20-45-242908. Estonian Research Council (PRG609), and the European Regional Development Fund (Centre of Excellence EcolChange). Canada-Denmark Arctic Research Station Early Career Scientist Exchange Program, from Polar knowledge Canada (POLAR) and the Danish Agency for Science and Higher Education. AP received funding from Fondecyt 1180205, CONICYT PIA AFB170008 and ANID PIA / BASAL FB210006. MP received funding from the Funding Org. Knut and Alice Wallenberg Foundation (grant nr. 2015.0047), and acknowledges funding from the Swedish Research Council (VR) with contributing research institutes to both the SITES and ICOS Sweden infrastructures. JP and RO were funded by the Spanish Ministry of Science grant PID2019-110521GB-I00, the fundacion Ramon Areces grant ELEMENTAL-CLIMATE, and the Catalan government grant 2017-1005. MPB received funding from the Svalbard Environmental Protection Fund (grant project number 15/128) and the Research Council of Norway (Arctic Field Grant, project number 269957). RP received funding from the Ministry of Education, Youth and Sports of the Czech Republic (grant INTER-TRANSFER nr. LTT20017). LTSER Zone Atelier Alpes; Federation FREE-Alpes. RP received funding from a Humboldt Fellowship for Experienced Researchers. Prokushkin AS and Zyryanov VI contribution has been supported by the RFBR grant #18-05-60203-Arktika. RPu received founding from the Polish National Science Centre (grant project number 2017/27/B/NZ8/00316). ODYSSEE project (ANR-13-ISV7-0004, PN-II-ID-JRP-RO-FR-2012). KR was supported through an Australian Government Research Training Program Scholarship. Fieldwork was supported by the Global Challenges program at the University of Wollongong, the ARC the Australian Antarctic Division and INACH. DR was funded by the project SUBANTECO IPEV 136 (French Polar Institute Paul-Emile Victor), Zone Atelier CNRS Antarctique et Terres Australes, SAD Region Bretagne (Project INFLICT), BiodivERsa 2019-2020 BioDivClim call 'ASICS' (ANR-20-EBI5-0004). SAR received funding from the Australian Research Council. NSF grant #1556772 to the University of Notre Dame. Pavia University (Italy). OR received funding from EU-LEAP-Agri (RAMSES II), EU-DESIRA (CASSECS), EU-H2020 (SustainSahel), AGROPOLIS and TOTAL Foundations (DSCATT), CGIAR (GLDC). AR was supported by the Russian Science Foundation (Grant 18-74-10048). Parc national des Ecrins. JS received funding from Vetenskapsradet grant nr (No: 2014-04270), ALTER-net multi-site grant, River LIFE project (LIFE08 NAT/S/000266), Flexpeil. Helmholtz Association long-term research program TERENO (Terrestrial Environmental Observatories). PS received funding from the Polish Ministry of Science and Higher Education (grant nr. N N305 304840). AS acknowledges funding by ETH Zurich project FEVER ETH-27 19-1. LSC received funding from NSERC Canada Graduate Scholarship (Doctoral) Program; LSC was also supported by ArcticNet-NCE (insert grant #). Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (141513/2017-9); FundacAo Carlos Chagas Filho de Amparo a Pesquisa do Estado do Rio de Janeiro (E26/200.84/2019). ZS received funding from the SRDA (grants nos. APVV-16-0325 and APVV-20-0365) and from the ERDF (grant no. ITMS 313011S735, CE LignoSilva). JS, MB and CA received funding from core budget of ETH Zurich. State excellence Program M-V \"WETSCAPES\". AfricanBioServices project funded by the EU Horizon 2020 grant number 641918. The authors from KIT/IMK-IFU acknowledge the funding received within the German Terrestrial Environmental Observatories (TERENO) research program of the Helmholtz Association and from the Bavarian Ministry of the Environment and Public Health (UGV06080204000). Deutsche Forschungsgemeinschaft (DFG, German Research Foundation), project number 192626868, in the framework of the collaborative German-Indonesian research project CRC 990 (SFB): 'EFForTS, Ecological and Socioeconomic Functions of Tropical Lowland Rainforest Transformation Systems (Sumatra, Indonesia)'. MS received funding from the Ministry of Education, Youth and Sports of the Czech Republic (grant nr. INTER-TRANSFER LTT19018). TT received funding from the Swedish National Space Board (SNSB Dnr 95/16) and the CASSECS project supported by the European Union. HJDT received funding from the UK Natural Environment Research Council (NERC doctoral training partnership grant NE/L002558/1). German Science Foundation (DFG) GraKo 2010 \"Response\". PDT received funding from the MEMOIRE project (PN-III-P1-1.1-PD2016-0925). Arctic Challenge for Sustainability II (ArCS II; JPMXD1420318865). JU received funding from Czech Science Foundation (grant nr. 21-11487S). TU received funding from the Romanian Ministry of Education and Research (CCCDI - UEFISCDI -project PN-III-P2-2.1-PED-2019-4924 and PN2019-2022/19270201-Ctr. 25N BIODIVERS 3-BIOSERV). AV acknowledge funding from RSF, project 21-14-00209. GFV received funding from the Dutch Research Council NWO (Veni grant, no. 863.14.013). Australian Research Council Discovery Early Career Research Award DE140101611. FGAV received funding from the Portuguese Science Foundation (FCT) under CEECIND/02509/2018, CESAM (UIDP/50017/2020+UIDB/50017/2020), FCT/MCTES through national funds, and the co-funding by the FEDER, within the PT2020 Partnership Agreement and Compete 2020. Ordesa y Monte Perdido National Park. MVI received funding from the Spanish Ministry of Science and Innovation through a doctoral grant (FPU17/05869). JW received funding from the Czech Science Foundation (grant nr. 20-28119S) and the Czech Academy of Sciences (grant nr. RVO 67985939). CR and SW received funding from the Swiss Federal Office for the Environment (FOEN) and the de Giacomi foundation. YY received funding from the National Natural Science Foundation of China (Grant no. 41861134039 and 41941015). ZY received funding from the National Natural Science Foundation of China (grant nr. 41877458). FZ received funding from the Swiss National Science Foundation (grant nr. 172198 and 193645). PZ received funding from the Funding Org. Knut and Alice Wallenberg Foundation (grant no. 2015.0047). JL received funding from (i) the Agence Nationale de la Recherche (ANR), under the framework of the young investigators (JCJC) funding instrument (ANR JCJC Grant project NoANR-19-CE32-0005-01: IMPRINT) (ii) the Centre National de la Recherche Scientifique (CNRS) (Defi INFINITI 2018: MORFO); and the Structure Federative de Recherche (SFR) Condorcet (FR CNRS 3417: CREUSE). Fieldwork in the Arctic got facilitated by funding from the EU INTERACT program. SN, UAT, JJA and JvO would like to thank the field team of the Vegetation Dynamics group for their efforts and hard work. We acknowledge Dominique Tristan for letting access to the field. For the logistic support the crew of INACH and Gabriel de Castilla Station team on Deception Island. We thank the Inuvialuit and Kluane First Nations for the opportunity to work on their land. MAdP acknowledges fieldwork assistance and logistics support to Unidad de Tecnologia Marina CSIC, and the crew of Juan Carlos I and Gabriel de Castilla Spanish Antarctic Stations, as well as to the different colleagues from UAH that helped on the instrument maintenance. ERF acknowledges fieldwork assistance by Martin Heggli. MBG acknowledges fieldwork and technical assistance by P Abadia, C Benede, P Bravo, J Gomez, M Grasa, R Jimenez, H Miranda, B Ponz, J Revilla and P Tejero and the Ordesa and Monte Perdido National Park staff. LH acknowledges field assistance by John Jacobs, Andrew Trant, Robert Way, Darroch Whitaker; we acknowledge the Inuit of Nunatsiavut, and the Co-management Board of Torngat Mountains National Park for their support of this project and acknowledge that the field research was conducted on their traditional lands. We thank our many bear guides, especially Boonie, Eli, Herman, John and Maria Merkuratsuk. AAK acknowledges field support of Akhtar Malik, Rameez Ahmad. Part of microclimatic records from Saxony was funded by the Saxon Switzerland National Park Administration. Tyson Research Center. JP acknowledges field support of Emmanuel Malet (Edytem) and Rangers of Reserves Naturelles de Haute-Savoie (ASTERS). Practical help: Roel H. Janssen, N. Huig, E. Bakker, Schools in the tepaseforsoket, Forskar fredag, Erik Herberg. The support by the Bavarian Forest National Park administration is highly appreciated. LvdB acknowledges CONAF and onsite support from the park rangers from PN Pan de Azucar, PN La Campana, PN Nahuelbuta and from communidad agricola Quebrada de Talca. JL and FS acknowledge Manuel Nicolas and all forest officers from the Office National des Forets (ONF) who are in charge of the RENECOFOR network and who provided help and local support for the installation and maintenance of temperature loggers in the field., Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1-km2 resolution for 0–5 and 5–15 cm soil depth. These maps were created by calculating the difference (i.e. offset) between in situ soil temperature measurements, based on time series from over 1200 1-km2 p ixels ( summarized f rom 8 519 u nique t emperature sensors) across all the world's major terrestrial biomes, and coarse-grained air temperature estimates from ERA5-Land (an atmospheric reanalysis by the European Centre for Medium-Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (−0.7 ± 2.3°C). The observed substantial and biome-specific offsets emphasize that the projected impacts of climate and climate change on near-surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil-related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications., FWO G018919N W001919N 12P1819N, DOB Ecology, University of Helsinki, Faculty of Science (MICROCLIM) 7510145, European Research Council (ERC) FORMICA 757833, Arctic Interactions at the University of Oulu, Academy of Finland 318930 337552, Maaja vesitekniikan tuki ry., Tiina and Antti Herlin Foundation, Nordenskiold Samfundet, Societas pro Fauna et Flora Fennica, Grant Agency of the Czech Republic 20-28119S 20-05840Y GA17-19376S 21-11487S, Czech Academy of Sciences RVO 67985939, National Geographic Society 9480-14 WW-240R-17, CISSC (program ICRP) 2397, Iran National Science Foundation (INSF) 96005914, Scottish Government's Rural and Environment Science and Analytical Services Division, Qatar Petroleum QUEX-CAS-QP-RD-18/19, European Union's Horizon 2020 research and innovation program 678841, Swiss National Science Foundation (SNSF), European Commission 172198 193645 31003A_176044, Ministry of Education, Youth & Sports - Czech Republic LTAUSA19137, Ministry of Science and Higher Education of the Russian Federation FSRZ-2020-0014, Independent Research Fund Denmark 8021-00423B 7027-00133B, German Research Foundation (DFG) DFG- FZT 118 202548816 TI 338/14-1 TI 338/14-2 BA 3843/6-1, grant project VEGA of the Ministry of Education of the Slovak Republic Slovak Academy of Sciences 2/0132/18, Forestry Commission, Universidad Javeriana, Direccion General de Cambio Climatico del Gobierno de Aragon, European Union's Horizon 2020 research and innovation program under the Marie Skodowska-Curie Grant 657627 SNF 407340_172433 40FA40_154245 20FI21_148992 20FI20_173691, European Commission 17841 774124, MCTI/CNPq/FNDCT 68/2013, Project 'Como as florestas da Amazonia Central respondem as variacoes climaticas? Efeitos sobre dinamica florestal e sinergia com a fragmentacAo florestal', Spanish Government, European Commission CGL2016-78093-R, ANID-FONDECYT 1181745, National Science Foundation, Poland UMO-2017/27/B/ST10/02228, National Research Foundation - South Africa, Australian Research Council, Slovak Research and Development Agency APVV-19-0319, Instituto Antartico Chileno INACH_RT-48_16 INACH FR-0418, Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT) PIA APOYO CCTE AFB170008 PIA AFB170008, UK Research & Innovation (UKRI), Natural Environment Research Council (NERC), Research Council of Norway, European Commission 230970, NERC E3 doctoral training partnership grant at the University of Edinburgh NE/L002558/1, Carnegie Trust for the Universities of Scotland, Gobern of Spain PERMAPLANET CTM2009-10165-E ANTARPERMA CTM2011-15565-E PERMASNOW CTM2014-52021-R, University of Alcala, Spanish Polar Committee, Autonomous Province of Bolzano (ITA), ScotNature, NERC National Capability LTS-S: UK-SCAPE NE/R016429/1, Ministry of Education, Youth & Sports - Czech Republic LTAUSA18007, Kempe Foundation JCK-1112 JCK-1822, Ministry of Education, Youth and Sports of the Czech Republic within the National Sustainability Programme I (NPU I) LO1415, project for national infrastructure support CzeCOS/ICOS LM2015061 GLORIA-EU EVK2-CT2000-00056, Tiroler Wissenschaftsfonds, University of Innsbruck, Sime Darby Foundation, Jardin Botanico Atlantico SV-20-GIJON-JBA, Federal Ministry of Education & Research (BMBF) 01LL0912 01LG1201M 01LG1201N, Comision Nacional de Investigacion Cientifica y Tecnologica (CONICYT) CONICYT FONDECYT 11170516 1180205, ANID PIA / BASAL FB210006, National Parks (DYNBIO) 1656/2015, Spanish Research Agency (VULBIMON) CGL2017-90040-R, Swiss National Science Foundation (SNSF) 20FI20_173691, Biotechnology and Biological Sciences Research Council (BBSRC) 206/D16053 FWO G0H1517N, EU Horizon2020 INFRAIA project eLTER-PLUS 871128, project LTER-CWN (FFG, F&E Infrastrukturforderung) 858024, Austrian Climate Research Program ACRP7 - CentForCSink - KR14AC7K11960, iDiv by the German Research Foundation DFG- FZT 118 202548816, Baden-Wurttemberg Ministry of Science, Research and Arts, Weston Foundation, ArcticNet, Natural Sciences and Engineering Research Council of Canada (NSERC) RGPIN-06691, Villum Foundation 17523, Ministry of Education, Youth & Sports - Czech Republic LM2015078 VAN2020/01 CZ.02.1.01/0.0/0.0/16_013/0001708 LTT17033 LTT20017 INTER-TRANSFER LTT19018, Bolin Centre for Climate Research, Stockholm University, Swedish Research Council Swedish Research Council Formas 2014-00530 2018-00792 2016-01187, Swedish Forest Society Foundation 2018-485-Steg 2 2017, Federal Ministry of Education & Research (BMBF) FKZ 031B0516C SUSALPS, Oberfrankenstiftung OFS FP00237, Energy Research Fund NYR-11 - 2019 NYR-18 - 2020, UK NERC Independent Research Fellowship NE/S01537X/1, National Science Centre, Poland 2016/21/B/ST10/02271, Polish National Centre for Research and Development Pol-Nor/203258/31/2013, MoEFCC, Govt of India (AICOPTAX project) 22018/12/2015/RE/Tax, Swedish Research Council Formas 2018-01781 2018-02700 2019-00836, research infrastructure ICOS-SE, National Research, Development and Innovation Fund of Hungary K128441, Programa Operativo FEDER 2018 B1-RNM-163-UGR-18, Norwegian Research Council (NORKLIMA grants) 184912 244525, CONICYT-PAI 79170119, ANID-MPG 190029, project MIUR PON Cluster OT4CLIMA, Stelvio National Park, AIAS-COFUND fellowship programme - Marie Skodowska- Curie actions under the European Union's Seventh Framework Pro-gramme for Research, Technological development and Demonstration 609033, Aarhus University Research Foundation, Denmark, EU FP6 NitroEurope 17841, EU FP7 ECLAIRE 282910, Ministry of Education and Science of Ukraine 505 550 574 602, GEF-UNEP NEC05348, ENI CBC BSB PONTOS BSB 889, Netherlands Organization for Scientific Research (NWO) 016.VICI.170.072, New Frontiers in Research Fund-Exploration NFRF-2018-02043, Natural Sciences and Engineering Research Council of Canada (NSERC), Australian Research Council DE180100570, National Science Foundation (NSF) DEB 1557094, International Center for Advanced Renewable Energy and Sustainability (I-CARES) at Washington University in St. Louis, Smithsonian Institution Smithsonian Tropical Research Institute, Tyson Research Center, UK Natural Environment Research Council through the ShrubTundra Project NE/M016323/1, Swedish Research Council Formas Swedish Research Council, Kempe Foundations - research infrastructure ICOS Kempe Foundations - research infrastructure SITES, Consejo Nacional de Investigaciones Cientificas y Tecnicas (CONICET) PIP 112-201501-00609, Spanish Government PID2019-110521GB-I00, Catalan government 2017-1005, French National Research Agency (ANR) ANR-10-LABX-45, General Directorate of State Forests, Warsaw, Poland, Max Planck Society, Russian Foundation for Basic Research (RFBR), Krasnoyarsk Territory Krasnoyarsk Regional Fund of Science 20-45-242908, Estonian Research Council PRG609, Knut & Alice Wallenberg Foundation 2015.0047, Swedish Research Council, fundacion Ramon Areces grant ELEMENTAL-CLIMATE, Svalbard Environmental Protection Fund 15/128, Research Council of Norway 269957, Humboldt Fellowship for Experienced Researchers, Russian Foundation for Basic Research (RFBR) 18-05-60203-Arktika, Polish National Science Centre 2017/27/B/NZ8/00316, ODYSSEE project (PN-II-ID-JRP-RO-FR-2012) ANR-13-ISV7-0004, Australian Government, Department of Industry, Innovation and Science, Global Challenges program at the University of Wollongong, ARC the Australian Antarctic Division, INACH, project SUBANTECO IPEV 136 (French Polar Institute Paul-Emile Victor), Zone Atelier CNRS Antarctique et Terres Australes, SAD Region Bretagne (Project INFLICT), BiodivERsa 2019-2020 BioDivClim call 'ASICS' ANR-20-EBI5-0004, National Science Foundation (NSF) 1556772, EU-LEAP-Agri (RAMSES II) EU-DESIRA (CASSECS) EU-H2020 (SustainSahel), AGROPOLIS, Total SA, CGIAR, Russian Science Foundation (RSF) 18-74-10048, Swedish Research Council 2014-04270, ALTER-net multi-site grant, River LIFE project LIFE08 NAT/S/000266, Flexpeil, Ministry of Science and Higher Education, Poland N N305 304840, ETH Zurich FEVER ETH-27 19-1, NSERC Canada Graduate Scholarship (Doctoral) Program, ArcticNet-NCE, Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPQ) 141513/2017-9, Fundacao Carlos Chagas Filho de Amparo a Pesquisa do Estado do Rio De Janeiro (FAPERJ) E26/200.84/2019, SRDA APVV-16-0325 APVV-20-0365, ERDF (CE LignoSilva) ITMS 313011S735, ETH Zurich, EU Horizon 2020 641918, German Terrestrial Environmental Observatories (TERENO) research program of the Helmholtz Association, Bavarian Ministry of the Environment and Public Health UGV06080204000 German Research Foundation (DFG) 192626868, Swedish National Space Board (SNSB) 95/16, CASSECS project by the European Union, Natural Environment Research Council (NERC) NE/L002558/1, MEMOIRE project PN-III-P1-1.1-PD2016-0925, Arctic Challenge for Sustainability II (ArCS II) JPMXD1420318865, Consiliul National al Cercetarii Stiintifice (CNCS), Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii (UEFISCDI) PN-III-P2-2.1-PED-2019-4924 PN2019-2022/19270201, 25N BIODIVERS 3-BIOSERV, Russian Science Foundation (RSF) 21-14-00209., Netherlands Organization for Scientific Research (NWO) 863.14.013, Australian Research Council DE140101611, Portuguese Foundation for Science and Technology CEECIND/02509/2018 CESAM UIDP/50017/2020+UIDB/50017/2020, Portuguese Foundation for Science and Technology European Commission, FEDER, within the PT2020 Partnership Agreement, Compete 2020, Spanish Government FPU17/05869, Swiss Federal Office for the Environment (FOEN), Giacomi foundation, National Natural Science Foundation of China (NSFC) 41861134039 41941015 41877458, French National Research Agency (ANR) ANR-19-CE32-0005-01 Centre National de la Recherche Scientifique (CNRS), Structure Federative de Recherche (SFR) Condorcet (FR CNRS 3417: CREUSE), EU INTERACT program, Inuit of Nunatsiavut, Co-management Board of Torngat Mountains National Park, Saxon Switzerland National Park Administration, Bavarian Forest National Park administration, BECC - Biodiversity and Ecosystem services in a Changing Climate, Research Foundation Flanders (FWO-SBO) S000619N
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18. Estimates, trends, and drivers of the global burden of type 2 diabetes attributable to PM2·5 air pollution, 1990–2019: an analysis of data from the Global Burden of Disease Study 2019
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Burkart, Katrin, Causey, Kate, Cohen, Aaron J., Wozniak, Sarah S., Salvi, Devashri Digvijay, Abbafati, Cristiana, Adekanmbi, Victor, Adsuar, Jose C., Ahmadi, Keivan, Alahdab, Fares, Al-Aly, Ziyad, Alipour, Vahid, Alvis-Guzman, Nelson, Amegah, Adeladza Kofi, Andrei, Catalina Liliana, Andrei, Tudorel, Ansari, Fereshteh, Arabloo, Jalal, Aremu, Olatunde, Aripov, Timur, Babaee, Ebrahim, Banach, Maciej, Barnett, Anthony, Bärnighausen, Till Winfried, Bedi, Neeraj, Behzadifar, Masoud, Béjot, Yannick, Bennett, Derrick A., Bensenor, Isabela M., Bernstein, Robert S., Bhattacharyya, Krittika, Bijani, Ali, Biondi, Antonio, Bohlouli, Somayeh, Breitner, Susanne, Brenner, Hermann, Butt, Zahid A., Cámera, Luis Alberto, Cantu-Brito, Carlos, Carvalho, Felix, Cerin, Ester, Chattu, Vijay Kumar, Chauhan, Bal Govind, Choi, Jee-Young Jasmine, Chu, Dinh-Toi, Dai, Xiaochen, Dandona, Lalit, Dandona, Rakhi, Daryani, Ahmad, Davletov, Kairat, de Courten, Barbora, Demeke, Feleke Mekonnen, Denova-Gutiérrez, Edgar, Dharmaratne, Samath Dhamminda, Dhimal, Meghnath, Diaz, Daniel, Djalalinia, Shirin, Duncan, Bruce B., El Sayed Zaki, Maysaa, Eskandarieh, Sharareh, Fareed, Mohammad, Farzadfar, Farshad, Fattahi, Nazir, Fazlzadeh, Mehdi, Fernandes, Eduarda, Filip, Irina, Fischer, Florian, Foigt, Nataliya A., Freitas, Marisa, Ghashghaee, Ahmad, Gill, Paramjit, Ginawi, Ibrahim Abdelmageed, Gopalani, Sameer Vali, Guo, Yuming, Gupta, Rajat Das, Habtewold, Tesfa Dejenie, Hamadeh, Randah R., Hamidi, Samer, Hankey, Graeme J., Hasanpoor, Edris, Hassen, Hamid Yimam, Hay, Simon I., Heibati, Behzad, Hole, Michael K., Hossain, Naznin, Househ, Mowafa, Irvani, Seyed Sina Naghibi, Jaafari, Jalil, Jakovljevic, Mihajlo, Jha, Ravi Prakash, Jonas, Jost B., Jozwiak, Jacek Jerzy, Kasaeian, Amir, Kaydi, Neda, Khader, Yousef Saleh, Khafaie, Morteza Abdullatif, Khan, Ejaz Ahmad, Khan, Junaid, Khan, Md Nuruzzaman, Khatab, Khaled, Khater, Amir M., Kim, Yun Jin, Kimokoti, Ruth W., Kisa, Adnan, Kivimäki, Mika, Knibbs, Luke D., Kosen, Soewarta, Koul, Parvaiz A., Koyanagi, Ai, Kuate Defo, Barthelemy, Kugbey, Nuworza, Lauriola, Paolo, Lee, Paul H., Leili, Mostafa, Lewycka, Sonia, Li, Shanshan, Lim, Lee-Ling, Linn, Shai, Liu, Yong, Lorkowski, Stefan, Mahasha, Phetole Walter, Mahotra, Narayan B., Majeed, Azeem, Maleki, Afshin, Malekzadeh, Reza, Mamun, Abdullah A., Manafi, Navid, Martini, Santi, Meharie, Birhanu Geta, Menezes, Ritesh G., Mestrovic, Tomislav, Miazgowski, Bartosz, Miazgowski, Tomasz, Miller, Ted R., Mini, G. K., Mirica, Andreea, Mirrakhimov, Erkin M., Mohajer, Bahram, Mohammed, Shafiu, Mohan, Viswanathan, Mokdad, Ali H., Monasta, Lorenzo, Moraga, Paula, Morrison, Shane Douglas, Mueller, Ulrich Otto, Mukhopadhyay, Satinath, Mustafa, Ghulam, Muthupandian, Saravanan, Naik, Gurudatta, Nangia, Vinay, Ndwandwe, Duduzile Edith, Negoi, Ruxandra Irina, Ningrum, Dina Nur Anggraini, Noubiap, Jean Jacques, Ogbo, Felix Akpojene, Olagunju, Andrew T., Onwujekwe, Obinna E., Ortiz, Alberto, Owolabi, Mayowa O., P A, Mahesh, Panda-Jonas, Songhomitra, Park, Eun-Kee, Pashazadeh Kan, Fatemeh, Pirsaheb, Meghdad, Postma, Maarten J., Pourjafar, Hadi, Radfar, Amir, Rafiei, Alireza, Rahim, Fakher, Rahimi-Movaghar, Vafa, Rahman, Muhammad Aziz, Rai, Rajesh Kumar, Ranabhat, Chhabi Lal, Raoofi, Samira, Rawal, Lal, Renzaho, Andre M. N., Rezapour, Aziz, Ribeiro, Daniela, Roever, Leonardo, Ronfani, Luca, Sabour, Siamak, Saddik, Basema, Sadeghi, Ehsan, Saeedi Moghaddam, Sahar, Sahebkar, Amirhossein, Sahraian, Mohammad Ali, Salimzadeh, Hamideh, Salvi, Sundeep Santosh, Samy, Abdallah M., Sanabria, Juan, Sarmiento-Suárez, Rodrigo, Sathish, Thirunavukkarasu, Schmidt, Maria Inês, Schutte, Aletta Elisabeth, Sepanlou, Sadaf G., Shaikh, Masood Ali, Sharafi, Kiomars, Sheikh, Aziz, Shigematsu, Mika, Shiri, Rahman, Shirkoohi, Reza, Shuval, Kerem, Soyiri, Ireneous N., Tabarés-Seisdedos, Rafael, Tefera, Yonatal Mesfin, Tehrani-Banihashemi, Arash, Temsah, Mohamad-Hani, Thankappan, Kavumpurathu Raman, Topor-Madry, Roman, Tudor Car, Lorainne, Ullah, Irfan, Vacante, Marco, Valdez, Pascual R., Vasankari, Tommi Juhani, Violante, Francesco S., Waheed, Yasir, Wolfe, Charles D. A., Yamada, Tomohide, Yonemoto, Naohiro, Yu, Chuanhua, Zaman, Sojib Bin, Zhang, Yunquan, Zodpey, Sanjay, Lim, Stephen S., Stanaway, Jeffrey D., Brauer, Michael, HASH(0x5651c97b2c90), GBD 2019 Diabetes and Air Pollution Collaborators, QE Econometrics, RS: GSBE other - not theme-related research, Department of Public Health, University of Helsinki, Value, Affordability and Sustainability (VALUE), Real World Studies in PharmacoEpidemiology, -Genetics, -Economics and -Therapy (PEGET), and Microbes in Health and Disease (MHD)
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Contaminación del Aire ,Health (social science) ,Type II Diabetes ,Type 2 diabetes deaths ,air pollution ,and YLLs attributable to all PM2·5 air pollution ,Medicine (miscellaneous) ,and change from 1990 to 2019 ,DALYs ,burden of disease ,Global Burden of Disease ,Carga Global de Enfermedades ,MELLITUS ,INFLAMMATION ,and household PM2·5 pollution from solid fuels in seven GBD super-regions and globally in 2019 ,Diabetes Mellitus ,Humans ,Biology ,ASSOCIATIONS ,RISK ,INSULIN-RESISTANCE ,GBD 2019 Diabetes and Air Pollution Collaborators ,Health Policy ,Material Particulado ,Public Health, Environmental and Occupational Health ,Bayes Theorem ,LONG-TERM EXPOSURE ,Humanos ,YLDs ,Chemistry ,Diabetes Mellitus, Type 2 ,3121 General medicine, internal medicine and other clinical medicine ,Años de Vida Ajustados por Calidad de Vida ,ambient PM2·5 pollution ,Particulate Matter ,Quality-Adjusted Life Years ,Human medicine ,FINE PARTICULATE MATTER ,RA - Abstract
Background: Experimental and epidemiological studies indicate an association between exposure to particulate matter (PM) air pollution and increased risk of type 2 diabetes. In view of the high and increasing prevalence of diabetes, we aimed to quantify the burden of type 2 diabetes attributable to PM2·5 originating from ambient and household air pollution.Methods: We systematically compiled all relevant cohort and case-control studies assessing the effect of exposure to household and ambient fine particulate matter (PM2·5) air pollution on type 2 diabetes incidence and mortality. We derived an exposure–response curve from the extracted relative risk estimates using the MR-BRT (meta-regression—Bayesian, regularised, trimmed) tool. The estimated curve was linked to ambient and household PM2·5 exposures from the Global Burden of Diseases, Injuries, and Risk Factors Study 2019, and estimates of the attributable burden (population attributable fractions and rates per 100 000 population of deaths and disability-adjusted life-years) for 204 countries from 1990 to 2019 were calculated. We also assessed the role of changes in exposure, population size, age, and type 2 diabetes incidence in the observed trend in PM2·5-attributable type 2 diabetes burden. All estimates are presented with 95% uncertainty intervals.Findings: In 2019, approximately a fifth of the global burden of type 2 diabetes was attributable to PM2·5 exposure, with an estimated 3·78 (95% uncertainty interval 2·68–4·83) deaths per 100 000 population and 167 (117–223) disability-adjusted life-years (DALYs) per 100 000 population. Approximately 13·4% (9·49–17·5) of deaths and 13·6% (9·73–17·9) of DALYs due to type 2 diabetes were contributed by ambient PM2·5, and 6·50% (4·22–9·53) of deaths and 5·92% (3·81–8·64) of DALYs by household air pollution. High burdens, in terms of numbers as well as rates, were estimated in Asia, sub-Saharan Africa, and South America. Since 1990, the attributable burden has increased by 50%, driven largely by population growth and ageing. Globally, the impact of reductions in household air pollution was largely offset by increased ambient PM2·5.Interpretation: Air pollution is a major risk factor for diabetes. We estimated that about a fifth of the global burden of type 2 diabetes is attributable PM2·5 pollution. Air pollution mitigation therefore might have an essential role in reducing the global disease burden resulting from type 2 diabetes.Funding: Bill & Melinda Gates Foundation.
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- 2022
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19. Enzymatic Deglycation of Damaged Skin by Means of Combined Treatment of Fructosamine-3-Kinase and Fructosyl-Amino Acid Oxidase
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Ignace De Decker, Margo Notebaert, Marijn M. Speeckaert, Karel E. Y. Claes, Phillip Blondeel, Elisabeth Van Aken, Jo Van Dorpe, Filip De Somer, Margaux Heintz, Stan Monstrey, and Joris R. Delanghe
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EXPRESSION ,Biochemistry & Molecular Biology ,fructosyl-amino acid oxidase ,Science & Technology ,Chemistry, Multidisciplinary ,advanced glycation end products ,Organic Chemistry ,General Medicine ,3-KINASE ,Catalysis ,COLLAGEN ,Computer Science Applications ,Inorganic Chemistry ,Chemistry ,fructosamine-3-kinase ,Physical Sciences ,Physical and Theoretical Chemistry ,GLYCATION END-PRODUCTS ,Molecular Biology ,Life Sciences & Biomedicine ,Spectroscopy - Abstract
The consensus in aging is that inflammation, cellular senescence, free radicals, and epigenetics are contributing factors. Skin glycation through advanced glycation end products (AGEs) has a crucial role in aging. Additionally, it has been suggested that their presence in scars leads to elasticity loss. This manuscript reports fructosamine-3-kinase (FN3K) and fructosyl-amino acid oxidase (FAOD) in counteracting skin glycation by AGEs. Skin specimens were obtained (n = 19) and incubated with glycolaldehyde (GA) for AGE induction. FN3K and FAOD were used as monotherapy or combination therapy. Negative and positive controls were treated with phosphate-buffered saline and aminoguanidine, respectively. Autofluorescence (AF) was used to measure deglycation. An excised hypertrophic scar tissue (HTS) (n = 1) was treated. Changes in chemical bonds and elasticity were evaluated using mid-infrared spectroscopy (MIR) and skin elongation, respectively. Specimens treated with FN3K and FAOD in monotherapy achieved an average decrease of 31% and 33% in AF values, respectively. When treatments were combined, a decrease of 43% was achieved. The positive control decreased by 28%, whilst the negative control showed no difference. Elongation testing of HTS showed a significant elasticity improvement after FN3K treatment. ATR-IR spectra demonstrated differences in chemical bounds pre- versus post-treatment. FN3K and FAOD can achieve deglycation and the effects are most optimal when combined in one treatment. ispartof: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES vol:24 issue:10 ispartof: location:Switzerland status: published
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- 2023
20. Sequence-Defined Mikto-Arm Star-Shaped Macromolecules
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Melissa A. Reith, Irene De Franceschi, Matthieu Soete, Nezha Badi, Resat Aksakal, and Filip E. Du Prez
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Chemistry ,Peptoids ,Colloid and Surface Chemistry ,Macromolecular Substances ,Polymers ,General Chemistry ,LIGAND ,Peptides ,ACRYLATE OLIGOMERS ,Biochemistry ,Mass Spectrometry ,Catalysis - Abstract
The synthesis of sequence-defined, discrete star-shaped macromolecules is a major challenge due to the lack of straightforward and versatile approaches. Here, a robust strategy is proposed that allows not only the preparation of sequence-defined mikto-arm star-shaped macromolecules but also the synthesis of a series of unprecedented discrete, multifunctional complex architectures with molar masses above 11 kDa. The iterative approach reported makes use of readily available building blocks and results in asymmetrically branched macromolecules with high purity and yields, which is showcased with monodisperse mikto-arm three-, four-, and five-arm star-shaped structures that were all characterized via LC-MS, MALDI-ToF, and NMR. This effective strategy drastically improves upon synthetic abilities of polymer chemists by enabling simultaneously sequence definition, precision insertion of branching points, as well as the orthogonal end-group functionalization of complex polymeric architectures. The presented approach, which can be translated to different platforms such as peptides and peptoids, is therefore particularly interesting in biomedical applications for which multiple different functional moieties on a single discrete macromolecule are needed.
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- 2022
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21. Reprocessing of Covalent Adaptable Polyamide Networks through Internal Catalysis and Ring-Size Effects
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Filip Du Prez, Yann Spiesschaert, Johan M. Winne, and Filip Van Lijsebetten
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General Chemistry ,Ring (chemistry) ,Biochemistry ,Catalysis ,Dissociation (chemistry) ,Viscoelasticity ,Dibasic ester ,Ring size ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,chemistry ,Chemical engineering ,Covalent bond ,Polyamide ,Imide - Abstract
Here, we report the introduction of internally catalyzed amide bonds to obtain covalent adaptable polyamide networks that rely on the dissociation equilibrium between dicarboxamides and imides. While amide bonds are usually considered to be robust and thermally stable, the present study shows that their dynamic character can be activated by a smart choice of available building blocks without the addition of any external catalyst or other additives. Hence, a range of polyamide-based dynamic networks with variable mechanical and viscoelastic properties have been obtained in a systematic study, using a straightforward curing process of dibasic ester and amine compounds. Since the dissociation process involves a cyclic imide formation, the correlation between ring size and the thermomechanical viscosity profile was studied for five- to seven-membered ring intermediates, depending on the chosen dibasic ester monomer. This resulted in a marked temperature response with activation energies in the range of 116-197 kJ mol-1, yielding a sharp transition between elastic and viscous behavior. Moreover, the ease and versatility of this chemistry platform were demonstrated by selecting a variety of amines, resulting in densely cross-linked dynamic networks with Tg values ranging from -20 to 110 °C. With this approach, it is possible to design amorphous polyamide networks with an acute temperature response, allowing for good reprocessability and, simultaneously, high resistance to irreversible deformation at elevated temperatures.
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- 2021
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22. A Highly Dynamic Covalent Polymer Network without Creep: Mission Impossible?
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Filip Van Lijsebetten, Tapas Debsharma, Johan M. Winne, and Filip E. Du Prez
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VITRIMERS ,Fast Reprocessing ,Creep Resistance ,VISCOELASTICITY ,CHEMICAL-STRUCTURE ,TRANSALKYLATION ,Dynamic Covalent Networks ,General Medicine ,General Chemistry ,Catalysis ,CROSS-LINK DENSITY ,Chemistry ,Recyclable Thermoset ,INTERNAL CATALYSIS ,ADAPTABLE NETWORKS ,EXCHANGE ,PHASE-SEPARATION - Abstract
Dynamic covalent polymer networks provide an interesting solution to the challenging recyclability of thermosets and elastomers. One of the remaining design constraints, however, is balancing thermal reprocessability in the form of material flow with dimensional stability during use. As a result, many chemistries are being investigated in order to improve bond reactivity control and material robustness. This Minireview highlights a number of promising concepts, with a particular emphasis on disconnecting chemical reactivity in low and high temperature regimes to obtain creep resistant, yet highly dynamic polymer networks. In addition, we will highlight the impact of sharp reactivity changes when applying extrapolation-based approaches during rheological analysis. As a result, we are confident that abandoning the myth of "permanent" reactivity will aid in the development of sustainable polymeric materials that can truly combine the benefits of thermoplastic and thermoset behaviour.
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- 2022
23. Masked Primary Amines for a Controlled Plastic Flow of Vitrimers
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Filip Van Lijsebetten, Kevin De Bruycker, Johan M. Winne, and Filip E. Du Prez
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Inorganic Chemistry ,Chemistry ,Polymers and Plastics ,INTERNAL CATALYSIS ,Polymers ,Viscosity ,Organic Chemistry ,Materials Chemistry ,Amines ,COVALENT ADAPTABLE NETWORKS ,Plastics ,Urethane - Abstract
We present a simple method for increasing the reprocessability of vinylogous urethane (VU) vitrimers while decreasing the possibility of creep deformation at lower temper-atures. In particular, varying amounts of triethylenetetramine were added as a comonomer to the curing VU formulation to ensure that all of the primary amines reacted to form enaminone cross -links, resulting in a network without reactive primary amine chain -ends. As a result, transamination was significantly slowed down because secondary amines are much less reactive to VU exchange. On the other hand, at higher temperatures, pendent primary amines can be released via a dynamic, endothermic exchange with a nearby less-reactive secondary amine, thereby (re)activating material flow. As a result, ambivalent viscoelastic behavior could be achieved without depolymerization by dynamically releasing pendent primary amines from vinylogous urethane polymer chains. Through careful comonomer selection, VU vitrimers with low viscosity at processing temperatures and at the same time high viscosity at service temperatures could be prepared without the use of catalysts or additives, leveraging the synergistic effects of mildly reactive functionalities through neighboring group participation.
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- 2022
24. Якість життя хворих на неспецифічний виразковий коліт із супутнім субклінічним атеросклерозом
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T.M. Ternushchak, I.V. Chopei, and S.S. Filip
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chemistry.chemical_classification ,medicine.medical_specialty ,Abdominal pain ,Statin ,business.industry ,medicine.drug_class ,medicine.disease ,Gastroenterology ,Ulcerative colitis ,Surgery ,Quality of life ,chemistry ,Subclinical atherosclerosis ,Internal medicine ,Concomitant ,medicine ,In patient ,medicine.symptom ,business ,Polyunsaturated fatty acid - Abstract
The objective of this study was to evaluate the quality of life in patients with ulcerative colitis (UC) of moderate severity and concomitant subclinical atherosclerosis before and after combination treatment with statin and omega-3 polyunsaturated fatty acids (PUFAs). In patients with UC and concomitant atherosclerosis we have detected deterioration in quality of life mostly by the components of physical health (SF-36 questionnaire), which is directly proportional to the degree of atherosclerosis severity (p < 0.05). During combined treatment with statins and omega-3 PUFAs, there was a significant improvement in parameters of not only physical, but also mental health (p < 0.05). Analyzing data by specialized GSRS questionnaires, we have noted improvement in quality of life by three of the five scales — abdominal pain, dyspeptic and diarrheal syndromes (p < 0.05).
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- 2022
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25. Functional regioregular (poly)urethanes from soft nucleophiles and cyclic iminocarbonates
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Bruno Grignard, Pieter Mampuys, Julien Escudero, Dario Masullo, Filip Lemière, Bert U. W. Maes, and Christophe Detrembleur
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Chemistry ,Polymers and Plastics ,Organic Chemistry ,Bioengineering ,Biochemistry - Abstract
The catalyst-free synthesis of urethanes from cyclic iminocarbonates, used as masked isocyanates, and soft nucleophiles (i.e. carboxylic acids and thiols) has been studied. Remarkably, the ring-opening reaction was fully site-selective (i.e. methylene). The disclosed method showed high functional group tolerance towards carboxylic acids bearing alkyl-, alkenyl-, ketone-, pyrone- and hydroxyl groups. This methodology was further applied for the construction of regioregular functional polyurethanes by step-growth copolymerization of cyclic bisiminocarbonates and dicarboxylic acids or dithiols. M-w up to 34 000 g mol(-1) was obtained in a fully atom-economical manner using an equimolar amount of both monomers.
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- 2022
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26. Discrete, self-immolative N-substituted oligourethanes and their use as molecular tags
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Matthieu Soete, Jens Van Hoorde, and Filip Du Prez
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Chemistry ,SEQUENCE-DEFINED OLIGOMERS ,Polymers and Plastics ,Organic Chemistry ,Bioengineering ,POLYMERS ,Biochemistry - Abstract
Here, we first report a straightforward solution-phase approach for the synthesis of N-substituted oligourethanes. Using this protocol, discrete oligomers could be rapidly obtained on a multigram scale by solely utilizing liquid/liquid extractions, avoiding the need for excessive purification steps or the requirement for a solid or soluble support. In addition, structure elucidation of the obtained oligourethanes with the help of ESI- or LC-MS analysis was achieved by relying on the controlled depolymerization of these oligomers. Essential to this process is the presence of the terminal hydroxy moiety that can participate in an intramolecular cyclization. This intramolecular reaction was studied with a series of model compounds in order to determine the parameters that can be used to either enhance or inhibit its rate. In a last step of the study, the applicability of these chemically sequenceable macromolecules as molecular tags was demonstrated by their incorporation in a crosslinked polyurethane material. This study, hence, opens new avenues for the utilization of sequence-defined macromolecules for anti-counterfeiting purposes.
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- 2022
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27. Exploring the competitiveness of hydrogen-fueled gas turbines in future energy systems
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Filip Johnsson, Mikael Odenberger, and Simon Öberg
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Energy carrier ,Hydrogen ,Renewable Energy, Sustainability and the Environment ,Natural resource economics ,Combined cycle ,Energy Engineering and Power Technology ,chemistry.chemical_element ,Condensed Matter Physics ,law.invention ,Hydrogen storage ,Fuel Technology ,Electricity generation ,Work (electrical) ,chemistry ,Biogas ,law ,Greenhouse gas ,Environmental science - Abstract
Hydrogen is currently receiving attention as a possible cross-sectoral energy carrier with the potential to enable emission reductions in several sectors, including hard-to-abate sectors. In this work, a techno-economic optimization model is used to evaluate the competitiveness of time-shifting of electricity generation using electrolyzers, hydrogen storage and gas turbines fueled with hydrogen as part of the transition from the current electricity system to future electricity systems in Years 2030, 2040 and 2050. The model incorporates an emissions cap to ensure a gradual decline in carbon dioxide (CO2) levels, targeting near-zero CO2 emissions by Year 2050, and this includes 15 European countries. The results show that hydrogen gas turbines have an important role to play in shifting electricity generation and providing capacity when carbon emissions are constrained to very low levels in Year 2050. The level of competitiveness is, however, considerably lower in energy systems that still allow significant levels of CO2 emissions, e.g., in Year 2030. For Years 2040 and 2050, the results indicate investments mainly in gas turbines that are partly fueled with hydrogen, with 30–77 vol.-% hydrogen in biogas, although some investments in exclusively hydrogen-fueled gas turbines are also envisioned. Both open cycle and combined cycle gas turbines (CCGT) receive investments, and the operational patterns show that also CCGTs have a frequent cyclical operation, whereby most of the start-stop cycles are less than 20 h in duration.
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- 2022
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28. In situ phosphorus-doped polycrystalline silicon films by low pressure chemical vapor deposition for contact passivation of silicon solar cells
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Jef Poortmans, Meriç Fırat, Maria Recaman Payo, Filip Duerinckx, Hariharsudan Sivaramakrishnan Radhakrishnan, and Loic Tous
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Solar cells ,Technology ,In situ doping ,Materials science ,Energy & Fuels ,Passivation ,Silicon ,LPCVD ,Analytical chemistry ,chemistry.chemical_element ,02 engineering and technology ,Chemical vapor deposition ,engineering.material ,010402 general chemistry ,01 natural sciences ,Phosphorus doping ,Electrical resistivity and conductivity ,General Materials Science ,Science & Technology ,DISILANE ,Dopant ,Renewable Energy, Sustainability and the Environment ,Doping ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Polycrystalline silicon ,chemistry ,Passivating contacts ,Polysilicon ,engineering ,0210 nano-technology ,Short circuit - Abstract
In situ phosphorus (P)-doped polycrystalline silicon (poly-Si) films by low pressure chemical vapor deposition (LPCVD) were studied in this work for the fabrication of poly-Si passivating contacts. In situ doping was targeted for enabling the full potential of the high-throughput LPCVD technique, as it could allow leaner fabrication of industrial solar cells featuring poly-Si passivating contacts than the more common ex situ doping routes. By careful optimization of the deposition temperature and the flows of the carrier gas (H-2) and the dopant precursor (PH3), high doping in the poly-Si layers was achieved with active P concentrations up to 1.3.10(20) cm(-3) . While reduction in the deposition rate (r(dep)) and thus in the throughput is a known problem when growing in situ P-doped films by LPCVD, this reduction could be limited, and the resulting r(dep) was equal to 0.078 nm/s. The developed poly-Si films were characterized both structurally and in terms of their passivation potential in poly-Si contacts. The latter yielded recombination current densities down to 1.5 fA/cm(2) in passivated (J(0, p)) and 25.6 fA/cm(2) in screen-printing metallized (J(0, m)) regions on saw-damage removed (SDR) Cz-Si surfaces, accompanied by a contact resistivity (rho(c,m)) of 4.9 m Omega.cm(2). On textured Cz-Si surfaces, the corresponding values were J(0, p) = 3.5 fA/cm(2), J(0,m )= 56.7 fA/cm(2), and rho(c,m) = 1.8 m Omega.cm(2). Optical impact of the developed poly-Si films was also assessed and a short circuit density loss of 0.41 mA/cm(2) is predicted per each 100 nm of poly-Si applied at the rear side of solar cells. The authors would like to acknowledge Rajiv Sharma from KU Leuven for his help with the interfacial oxide development, Sukhvinder Singh and Patrick Choulat from Imec for their help with the contact resistivity measurements and sample fabrication, Thomas Nuytten and Stefanie Sergeant from Imec for the Raman spectroscopy measurements, Bastien Douhard and Mustafa Ayyad from Imec for SIMS measurements, Maxim Korytov, Laura Nelissen, and Patricia van Marcke from Imec for the TEM specimen preparation and measurements, and Janusz Bogdanowicz from Imec for his help with the analysis of the Hall measurement data. This work was supported by the European Union’s Horizon2020 Programme for research, technological development, and demonstration [grant number 857793]; and by the Kuwait for the Advancement of Sciences [grant number CN18-15EE-01].
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- 2022
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29. Calcium-release channels: structure and function of IP3 receptors and ryanodine receptors
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Kellie A. Woll and Filip Van Petegem
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0301 basic medicine ,Physiology ,Chemistry ,Ryanodine receptor ,Endoplasmic reticulum ,chemistry.chemical_element ,General Medicine ,Calcium ,Structure and function ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Membrane protein ,Physiology (medical) ,Receptor ,Molecular Biology ,030217 neurology & neurosurgery ,Calcium signaling - Abstract
Ca2+-release channels are giant membrane proteins that control the release of Ca2+ from the endoplasmic and sarcoplasmic reticulum. The two members, ryanodine receptors (RyRs) and inositol-1,4,5-trisphosphate receptors (IP3Rs), are evolutionarily related and are both activated by cytosolic Ca2+. They share a common architecture, but RyRs have evolved additional modules in the cytosolic region. Their massive size allows for the regulation by tens of proteins and small molecules, which can affect the opening and closing of the channels. In addition to Ca2+, other major triggers include IP3 for the IP3Rs and depolarization of the plasma membrane for a particular RyR subtype expressed in skeletal muscle. Their size has made them popular targets for study via electron microscopic methods, with current structures culminating near 3 Å. The available structures have provided many new mechanistic insights into the binding of auxiliary proteins and small molecules, how these can regulate channel opening, and the mechanisms of disease-associated mutations. They also help scrutinize previously proposed binding sites, as some of these are now incompatible with the structures. Many questions remain around the structural effects of posttranslational modifications, additional binding partners, and the higher order complexes these channels can make in situ. This review summarizes our current knowledge about the structures of Ca2+-release channels and how this informs on their function.
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- 2022
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30. Multiparametric Tumor Organoid Drug Screening Using Widefield Live-Cell Imaging for Bulk and Single-Organoid Analysis
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Christophe Deben, Abraham Lin, Marc Peeters, Hans Prenen, Steve Vanlanduit, Geert Roeyen, Filip Lardon, Evelien Smits, Sofía Peeters, Edgar Cardenas De La Hoz, and Maxim Le Compte
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Chemistry ,General Immunology and Microbiology ,General Chemical Engineering ,General Neuroscience ,Biology ,Engineering sciences. Technology ,General Biochemistry, Genetics and Molecular Biology - Abstract
Patient-derived tumor organoids (PDTOs) hold great promise for preclinical and translational research and predicting the patient therapy response from ex vivo drug screenings. However, current adenosine triphosphate (ATP)-based drug screening assays do not capture the complexity of a drug response (cytostatic or cytotoxic) and intratumor heterogeneity that has been shown to be retained in PDTOs due to a bulk readout. Live-cell imaging is a powerful tool to overcome this issue and visualize drug responses more in-depth. However, image analysis software is often not adapted to the three-dimensionality of PDTOs, requires fluorescent viability dyes, or is not compatible with a 384-well microplate format. This paper describes a semi-automated methodology to seed, treat, and image PDTOs in a high-throughput, 384-well format using conventional, widefield, live-cell imaging systems. In addition, we developed viability marker-free image analysis software to quantify growth rate-based drug response metrics that improve reproducibility and correct growth rate variations between different PDTO lines. Using the normalized drug response metric, which scores drug response based on the growth rate normalized to a positive and negative control condition, and a fluorescent cell death dye, cytotoxic and cytostatic drug responses can be easily distinguished, profoundly improving the classification of responders and non-responders. In addition, drug-response heterogeneity can by quantified from single-organoid drug response analysis to identify potential, resistant clones. Ultimately, this method aims to improve the prediction of clinical therapy response by capturing a multiparametric drug response signature, which includes kinetic growth arrest and cell death quantification.
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- 2023
31. Phenanthridine–pyrene conjugates as fluorescent probes for DNA/RNA and an inactive mutant of dipeptidyl peptidase enzyme
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Josipa Matić, Tana Tandarić, Marijana Radić Stojković, Filip Šupljika, Zrinka Karačić, Ana Tomašić Paić, Lucija Horvat, Robert Vianello, and Lidija-Marija Tumir
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Chemistry ,dipeptidyl peptidase enzyme ,excimer ,molecular dynamics simulations ,phenanthridine ,polynucleotide ,pyrene ,Organic Chemistry - Abstract
Two novel conjugate molecules were designed: pyrene and phenanthridine-amino acid units with a different linker length between the aromatic fragments. Molecular modelling combined with spectrophotometric experiments revealed that in neutral and acidic buffered water solutions conjugates predominantly exist in intramolecularly stacked conformations because of the π–π stacking interaction between pyrene and phenanthridine moieties. The investigated systems exhibited a pH-dependent excimer formation that is significantly red-shifted relative to the pyrene and phenanthridine fluorescence. While the conjugate with a short linker showed negligible spectrophotometric changes due to the polynucleotide addition, the conjugate with a longer and more flexible linker exhibited a micromolar and submicromolar binding affinity for ds-polynucleotides and inactivated a mutant of dipeptidyl peptidase enzyme E451A. Confocal microscopy revealed that the conjugate with the longer linker entered the HeLa cell membranes and blue fluorescence was visualized as the dye accumulated in the cell membrane.
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- 2023
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32. New insights into the combined toxicity of aflatoxin B1 and fumonisin B1 in HepG2 cells using Seahorse respirometry analysis and RNA transcriptome sequencing
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Xiangrong Chen, Mohamed F. Abdallah, Charlotte Grootaert, Filip Van Nieuwerburgh, and Andreja Rajkovic
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p53 ,Chemistry ,Aflatoxin B1 ,Mitochondrial toxicity ,Biology and Life Sciences ,Apoptosis ,Bioenergetics ,Transcriptomics ,Seahorse analysis ,General Environmental Science ,Fumonisin B1 - Abstract
Aflatoxin B1 (AFB1) and fumonisin B1 (FB1) are widely (co-)detected in food and known for their hepatotoxicity in humans. Still, their combined toxicity needs to be investigated, especially the impact on mitochondria. In our previous work, we examined the effect of short-term exposure to different doses of AFB1, FB1, and their binary mixture (MIX) on the bioenergetic status of HepG2 cells, a well-recognized in vitro model system for studying liver cell function. In the current work, we further investigated the (combined) effect of AFB1 and FB1 on the mitochondrial and glycolytic activity of HepG2 cells using Seahorse respirometry analysis and RNA transcriptome sequencing. The results showed that the co-exposure, especially at high doses, is more toxic due to a more inhibition of all parameters of mitochondrial respiration. However, FB1 contributes more to the MIX effects than AFB1. RNA transcriptome sequencing showed that the p53 signaling pathway, a major orchestrator of mitochondrial apoptosis, was differentially expressed. Moreover, the co-exposure significantly downregulated the genes encoding for Complexes I, II, III, and IV, representing the onset of the suppressed mitochondrial respiration in HepG2 cells.
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- 2023
33. Validated Portable Device for the Qualitative and Quantitative Electrochemical Detection of Mdma Ready for On-Site Use
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Robin Van Echelpoel, Marc Parrilla, Nick Sleegers, Saranya Thiruvottriyur Shanmugam, Alexander L.N. van Nuijs, Amorn Slosse, Filip Van Durme, and Karolien De Wael
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Chemistry ,Biology ,Engineering sciences. Technology ,Spectroscopy ,Analytical Chemistry - Abstract
Identifying and quantifying 3,4-methylenedioxymethamphetamine (MDMA) on-site in suspected illicit drug samples, whether it be at recreational settings or manufacturing sites, is a major challenge for law enforcement agencies (LEAs). Various analytical techniques exist to fulfil this goal, e.g. colourimetry and portable spectroscopic techniques, each having its specific limitations (e.g. low accuracy, fluorescence, no quantification) and strengths (e.g. fast, easy to use). In this work, for the first time, an electrochemical MDMA sensor is presented to become a detection tool that can realistically be used on-site. More specifically, the use of a single buffer solution and an unmodified screen-printed electrode, along with the integration of a data analysis algorithm and mobile application permits the straightforward on-site identification and quantification of MDMA in suspicious samples. Multiple studies investigating different parameters, including pH, concentration, reproducibility, temperature and binary mixture analyses, were executed. To fully understand all the occurring redox processes, liquid chromatography coupled with high-resolution mass spectrometry analysis of partially electrolyzed MDMA samples was performed unravelling oxidation of the methylenedioxy group. Validation of the methodology was executed on 15 MDMA street samples analysed by gas chromatography coupled with mass spectrometry and compared with the performance of a commercial portable Raman and Attenuated Total Reflection Fourier Transform Infrared Spectroscopy (ATR-FTIR) device. The novel methodology outperformed the spectroscopic techniques, correctly identifying all 15 street samples. Additionally, the electrochemical sensor predicted the purity of the tablets with a mean absolute error of 2.3%. Overall, this new, electrochemical detection strategy provides LEAs the rapid, low-cost, on-site detection and quantification of MDMA in suspicious samples, without requiring specialized training.
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- 2023
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34. Auranofin synergizes with the PARP inhibitor olaparib to induce ROS-mediated cell death in mutant p53 cancers
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Laurie Freire Boullosa, Jinthe Van Loenhout, Tal Flieswasser, Christophe Hermans, Céline Merlin, Ho Wa Lau, Elly Marcq, Marlies Verschuuren, Winnok H. De Vos, Filip Lardon, Evelien L. J. Smits, and Christophe Deben
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Chemistry ,auranofin ,olaparib ,reactive oxygen species ,non-small cell lung cancer ,pancreatic ductal adenocarcinoma ,cancer cell death ,Physiology ,Pharmacology. Therapy ,Clinical Biochemistry ,Cell Biology ,Molecular Biology ,Biochemistry ,Biology - Abstract
Auranofin (AF) is a potent, off-patent thioredoxin reductase (TrxR) inhibitor that efficiently targets cancer via reactive oxygen species (ROS)- and DNA damage-mediated cell death. The goal of this study is to enhance the efficacy of AF as a cancer treatment by combining it with the poly(ADP-ribose) polymerase-1 (PARP) inhibitor olaparib (referred to as ‘aurola’). Firstly, we investigated whether mutant p53 can sensitize non-small cell lung cancer (NSCLC) and pancreatic ductal adenocarcinoma (PDAC) cancer cells to AF and olaparib treatment in p53 knock-in and knock-out models with varying p53 protein expression levels. Secondly, we determined the therapeutic range for synergistic cytotoxicity between AF and olaparib and elucidated the underlying molecular cell death mechanisms. Lastly, we evaluated the effectiveness of the combination strategy in a murine 344SQ 3D spheroid and syngeneic in vivo lung cancer model. We demonstrated that high concentrations of AF and olaparib synergistically induced cytotoxicity in NSCLC and PDAC cell lines with low levels of mutant p53 protein that were initially more resistant to AF. The aurola combination also led to the highest accumulation of ROS, which resulted in ROS-dependent cytotoxicity of mutant p53 NSCLC cells through distinct types of cell death, including caspase-3/7-dependent apoptosis, inhibited by Z-VAD-FMK, and lipid peroxidation-dependent ferroptosis, inhibited by ferrostatin-1 and alpha-tocopherol. High concentrations of both compounds were also needed to obtain a synergistic cytotoxic effect in 3D spheroids of the murine lung adenocarcinoma cell line 344SQ, which was interestingly absent in 2D. This cell line was used in a syngeneic mouse model in which the oral administration of aurola significantly delayed the growth of mutant p53 344SQ tumors in 129S2/SvPasCrl mice, while either agent alone had no effect. In addition, RNA sequencing results revealed that AF- and aurola-treated 344SQ tumors were negatively enriched for immune-related gene sets, which is in accordance with AF’s anti-inflammatory function as an anti-rheumatic drug. Only 344SQ tumors treated with aurola showed the downregulation of genes related to the cell cycle, potentially explaining the growth inhibitory effect of aurola since no apoptosis-related gene sets were enriched. Overall, this novel combination strategy of oxidative stress induction (AF) with PARP inhibition (olaparib) could be a promising treatment for mutant p53 cancers, although high concentrations of both compounds need to be reached to obtain a substantial cytotoxic effect.
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- 2023
35. Phototoxicity and cell passage affect intracellular reactive oxygen species levels and sensitivity towards non-thermal plasma treatment in fluorescently-labeled cancer cells
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Hanne Verswyvel, Christophe Deben, An Wouters, Filip Lardon, Annemie Bogaerts, Evelien Smits, and Abraham Lin
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Chemistry ,Acoustics and Ultrasonics ,Physics ,Human medicine ,Condensed Matter Physics ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Abstract
Live-cell imaging with fluorescence microscopy is a powerful tool, especially in cancer research, widely-used for capturing dynamic cellular processes over time. However, light-induced toxicity (phototoxicity) can be incurred from this method, via disruption of intracellular redox balance and an overload of reactive oxygen species (ROS). This can introduce confounding effects in an experiment, especially in the context of evaluating and screening novel therapies. Here, we aimed to unravel whether phototoxicity can impact cellular homeostasis and response to non-thermal plasma (NTP), a therapeutic strategy which specifically targets the intracellular redox balance. We demonstrate that cells incorporated with a fluorescent reporter for live-cell imaging have increased sensitivity to NTP, when exposed to ambient light or fluorescence excitation, likely through altered proliferation rates and baseline intracellular ROS levels. These changes became even more pronounced the longer the cells stayed in culture. Therefore, our results have important implications for research implementing this analysis technique and are particularly important for designing experiments and evaluating redox-based therapies like NTP.
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- 2023
36. Ketoconazole-p aminobenzoic cocrystal, an improved antimycotic drug formulation, does not induce skin sensitization on the skin of BALBc mice
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Xenia Filip, Diana Olteanu, Irina Kacso, Sorina Danescu, Andras Nagy, Flavia Martin, Remus Moldovan, Ioana Baldea, and Gabriela Adriana Filip
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0301 basic medicine ,Drug ,Allergy ,Administration, Topical ,Drug Compounding ,media_common.quotation_subject ,medicine.medical_treatment ,Immunology ,Pharmacology ,Proinflammatory cytokine ,Mice ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Pharmacology (medical) ,Sensitization ,Skin ,media_common ,Mice, Inbred BALB C ,Chemistry ,medicine.disease ,Anti-Bacterial Agents ,Interleukin 10 ,Ketoconazole ,030104 developmental biology ,medicine.anatomical_structure ,Cytokine ,Female ,Tumor necrosis factor alpha ,Inflammation Mediators ,Crystallization ,4-Aminobenzoic Acid ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Fungal infections are a growing global health problem. Therefore, our group has synthetized and characterized an improved antimycotic by co-crystallization of ketoconazole and para-amino benzoic acid, named KET-PABA. The aim was to increase bioavailability, biocompatibility, and efficiency of the parent drug-ketoconazole. Based on our previous results showing the cocrystal improved physical properties, such as stability in suspension, solubility, as well as antimycotic efficiency compared to ketoconazole, the current study investigated the local possible side effects induced on the skin of BALBc mice by the application of KET-PABA cocrystal, in view of a further use as a topically applied antimycotic drug. A specific test (mouse ear-swelling test) was used, combined with the histopathological examination and the measurement of pro and anti-inflammatory cytokines and inflammation mediators. KET-PABA application was safe, without signs of skin sensitization shown by the mouse ear sensitization test, or histopathology. KET-PABA strongly inhibited proinflammatory cytokines such as IL1 α, IL1 β, IL6 and TNF α, and other proinflammatory inducers such as NRF2, compared to vehicle. KET-PABA had no effect on the levels of the anti-inflammatory cytokine IL10, or proinflammatory enzyme COX2 and had minimal effects on the activation of the NF-κB pathway. Overall, KET-PABA application induced no sensitization, moreover, it decreased the skin levels of proinflammatory molecules. The lack of skin sensitization effects on BALBc mice skin along with the inhibition of the proinflammatory markers show a good safety profile for topical applications of KET-PABA and show promise for a further clinical use in the treatment of cutaneous mycosis.
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- 2021
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37. The Effect of Chemical Structure of OEG Ligand Shells with Quaternary Ammonium Moiety on the Colloidal Stabilization, Cellular Uptake and Photothermal Stability of Gold Nanorods
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Ondrej Soukup, Filip Havel, Marketa Benkova, J. Proska, Lukas Prchal, Sarka Salajkova, Rafael Dolezal, Kamil Kuca, Zdenek Hodny, Michal Sramek, Monika Zarska, David Malinak, Filip Novotny, Kamil Musilek, and Jiri Bartek
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animal structures ,Biophysics ,Pharmaceutical Science ,Bioengineering ,02 engineering and technology ,Ligands ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Polyethylene Glycols ,Biomaterials ,photothermal stability ,chemistry.chemical_compound ,Drug Stability ,International Journal of Nanomedicine ,Drug Discovery ,Humans ,Moiety ,Colloids ,Alkyl ,Original Research ,chemistry.chemical_classification ,Nanotubes ,Ligand ,Organic Chemistry ,Temperature ,Cationic polymerization ,cellular uptake ,Biological Transport ,General Medicine ,Photothermal therapy ,021001 nanoscience & nanotechnology ,gold nanorods ,0104 chemical sciences ,quaternary ammonium salts ,oligoethylene glycol ,Quaternary Ammonium Compounds ,chemistry ,Drug delivery ,Nanorod ,Gold ,0210 nano-technology ,Hydrophobic and Hydrophilic Interactions ,Ethylene glycol ,HeLa Cells - Abstract
Sarka Salajkova,1,2 Filip Havel,1,3 Michal Sramek,1 Filip Novotny,1,4 David Malinak,2,5 Rafael Dolezal,2,5 Lukas Prchal,2 Marketa Benkova,2 Ondrej Soukup,2 Kamil Musilek,2,5 Kamil Kuca,2,5 Jiri Bartek,1,6,7 Jan Proska,3 Monika Zarska,1 Zdenek Hodny1 1Department of Genome Integrity, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czech Republic; 2Biomedical Research Center, University Hospital Hradec Kralove, Hradec Kralove, Czech Republic; 3Department of Physical Electronics, Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Prague, Czech Republic; 4Center for Advanced Functional Nanorobots, Department of Inorganic Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Prague, Czech Republic; 5Department of Chemistry, Faculty of Science, University of Hradec Kralove, Hradec Kralove, Czech Republic; 6Genome Integrity Unit, Danish Cancer Society Research Center, Copenhagen, Denmark; 7Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Division of Genome Biology, Karolinska Institute, Stockholm, SwedenCorrespondence: Monika ZarskaDepartment of Genome Integrity, Institute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, Prague 4, Prague, CZ 142 20, Czech RepublicTel +420- 24106 3151Fax + 420-24106 2289Email monika.zarska@img.cas.czKamil KucaBiomedical Research Center, University Hospital Hradec Kralove, Sokolska 581, Hradec Kralove, CZ 500 05, Czech RepublicTel +420-495 833 447Email kamil.kuca@fnhk.czPurpose: Plasmonic photothermal cancer therapy by gold nanorods (GNRs) emerges as a promising tool for cancer treatment. The goal of this study was to design cationic oligoethylene glycol (OEG) compounds varying in hydrophobicity and molecular electrostatic potential as ligand shells of GNRs. Three series of ligands with different length of OEG chain (ethylene glycol units = 3, 4, 5) and variants of quaternary ammonium salts (QAS) as terminal functional group were synthesized and compared to a prototypical quaternary ammonium ligand with alkyl chain – (16-mercaptohexadecyl)trimethylammonium bromide (MTAB).Methods: Step-by-step research approach starting with the preparation of compounds characterized by NMR and HRMS spectra, GNRs ligand exchange evaluation through characterization of cytotoxicity and GNRs cellular uptake was used. A method quantifying the reshaping of GNRs was applied to determine the effect of ligand structure on the heat transport from GNRs under fs-laser irradiation.Results: Fourteen out of 18 synthesized OEG compounds successfully stabilized GNRs in the water. The colloidal stability of prepared GNRs in the cell culture medium decreased with the number of OEG units. In contrast, the cellular uptake of OEG+GNRs by HeLa cells increased with the length of OEG chain while the structure of the QAS group showed a minor role. Compared to MTAB, more hydrophilic OEG compounds exhibited nearly two order of magnitude lower cytotoxicity in free state and provided efficient cellular uptake of GNRs close to the level of MTAB. Regarding photothermal properties, OEG compounds evoked the photothermal reshaping of GNRs at lower peak fluence (14.8 mJ/cm2) of femtosecond laser irradiation than the alkanethiol MTAB.Conclusion: OEG+GNRs appear to be optimal for clinical applications with systemic administration of NPs not-requiring irradiation at high laser intensity such as drug delivery and photothermal therapy inducing apoptosis.Keywords: gold nanorods, quaternary ammonium salts, oligoethylene glycol, cellular uptake, photothermal stability
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- 2021
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38. Discovery of an Allosteric Ligand Binding Site in SMYD3 Lysine Methyltransferase
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Doreen Dobritzsch, Daniela Cederfeldt, Daniele Tedesco, Martin J. Talu, Alberto Del Rio, Xavier Barril, Marina Naldi, Giovanna Forte, Paola Sanese, Edoardo Fabini, Vladimir O. Talibov, Elisabetta Manoni, Martina Lepore Signorile, Manuela Bartolini, Moira Rachman, Edward A. FitzGerald, U. Helena Danielson, Cristiano Simone, Filip Mihalic, Talibov, Vladimir O, Fabini, Edoardo, FitzGerald, Edward A, Tedesco, Daniele, Cederfeldt, Daniela, Talu, Martin J, Rachman, Moira M, Mihalic, Filip, Manoni, Elisabetta, Naldi, Marina, Sanese, Paola, Forte, Giovanna, Lepore Signorile, Martina, Barril, Xavier, Simone, Cristiano, Bartolini, Manuela, Dobritzsch, Doreen, Del Rio, Alberto, and Danielson, U Helena
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Methyltransferase ,Lysine ,Drug Evaluation, Preclinical ,Druggability ,epigenetic enzyme ,Plasma protein binding ,Ligands ,01 natural sciences ,Biochemistry ,Piperidines ,biophysical methods ,chemistry.chemical_classification ,SMYD3 ,Full Paper ,biology ,epigenetic enzymes ,Stereoisomerism ,Full Papers ,Ligand (biochemistry) ,Hsp90 ,Biofysik ,3. Good health ,Molecular Medicine ,Allosteric Site ,Protein Binding ,Allosteric regulation ,Biophysics ,Molecular Dynamics Simulation ,biophysical method ,010402 general chemistry ,Cell Line, Tumor ,Surface plasmon resonance ,Humans ,HSP90 Heat-Shock Proteins ,diperodon ,Molecular Biology ,Binding Sites ,Lysine methyl transferase ,010405 organic chemistry ,screening ,Organic Chemistry ,Histone-Lysine N-Methyltransferase ,0104 chemical sciences ,SMYD3 biology ,Kinetics ,Enzyme ,chemistry ,biology.protein ,ligand discovery - Abstract
SMYD3 is a multifunctional epigenetic enzyme with lysine methyltransferase activity and various interaction partners. It is implicated in the pathophysiology of cancers but with an unclear mechanism. To discover tool compounds for clarifying its biochemistry and potential as a therapeutic target, a set of drug‐like compounds was screened in a biosensor‐based competition assay. Diperodon was identified as an allosteric ligand; its R and S enantiomers were isolated, and their affinities to SMYD3 were determined (K D=42 and 84 μM, respectively). Co‐crystallization revealed that both enantiomers bind to a previously unidentified allosteric site in the C‐terminal protein binding domain, consistent with its weak inhibitory effect. No competition between diperodon and HSP90 (a known SMYD3 interaction partner) was observed although SMYD3–HSP90 binding was confirmed (K D=13 μM). Diperodon clearly represents a novel starting point for the design of tool compounds interacting with a druggable allosteric site, suitable for the exploration of noncatalytic SMYD3 functions and therapeutics with new mechanisms of action., From a distance: SMYD3 lysine methyltransferase is an epigenetic enzyme with multiple cellular functions and the ability to recognize broad range of substrates from histones to cytosolic proteins. An SPR biosensors‐based biophysical strategy for screening SMYD3 ligands was developed and revealed an allosteric binding site. Subsequent crystallographic studies provided a structural description of the novel binding site of SMYD3.
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- 2021
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39. Carbon fibre surface chemistry and its role in fibre-to-matrix adhesion
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Tiffany R. Walsh, Filip Stojcevski, Andreas Hendlmeier, Ben Newman, Daniel J. Eyckens, James D. Randall, Melissa K. Stanfield, David J. Hayne, Filip Vuković, and Luke C. Henderson
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Surface (mathematics) ,chemistry.chemical_classification ,Work (thermodynamics) ,Renewable Energy, Sustainability and the Environment ,Chemistry ,02 engineering and technology ,General Chemistry ,Adhesion ,Polymer ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Matrix (geology) ,Stress (mechanics) ,Molecular dynamics ,General Materials Science ,Interphase ,Composite material ,0210 nano-technology - Abstract
A key factor determining the performance of carbon fibre reinforced polymer (CFRP) composites is their fibre-to-matrix interactions, the interface and interphase, as these allow for the efficient transfer of stress from the relatively weak and ductile resin to the strong reinforcing fibres. The manipulation of the interface via modulation of surface chemistry has been been an active area of research with many apporaches being taken. In this work we cover efforts in this area from traditional manufacturing condition optimisations, plasma, wet chemical, and electrochemical approaches to induce favourable properties in composites. The design of molecular interactions at the interface are exceedingly difficult to determine and design, and thus, we finish this review with a section on the use of molecular dynamics to design complementary interfaces for the next generation of composites.
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- 2021
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40. Force-reversible chemical reaction at ambient temperature for designing toughened dynamic covalent polymer networks
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Mengqi Du, Hannes A. Houck, Qiang Yin, Yewei Xu, Ying Huang, Yang Lan, Li Yang, Filip E. Du Prez, Guanjun Chang, Du, Mengqi [0000-0002-8881-1427], Houck, Hannes A [0000-0001-7602-3784], Yang, Li [0000-0003-0047-6116], Du Prez, Filip E [0000-0001-7727-4155], Chang, Guanjun [0000-0002-9589-8030], and Apollo - University of Cambridge Repository
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3403 Macromolecular and Materials Chemistry ,Multidisciplinary ,34 Chemical Sciences ,123 ,article ,General Physics and Astronomy ,TRIAZOLINEDIONES ,MECHANICAL-PROPERTIES ,General Chemistry ,ELASTOMERS ,639/638/455/303 ,4016 Materials Engineering ,General Biochemistry, Genetics and Molecular Biology ,Chemistry ,BONDS ,639/301/923/1028 ,639/638/298/923/1028 ,140/131 ,128 ,140/133 ,CLICK ,KINETICS ,40 Engineering - Abstract
Force-reversible C-N bonds, resulting from the click chemistry reaction between triazolinedione (TAD) and indole derivatives, offer exciting opportunities for molecular-level engineering to design materials that respond to mechanical loads. Here, we displayed that TAD-indole adducts, acting as crosslink points in dry-state covalently crosslinked polymers, enable materials to display reversible stress-responsiveness in real time already at ambient temperature. Whereas the exergonic TAD-indole reaction results in the formation of bench-stable adducts, they were shown to dissociate at ambient temperature when embedded in a polymer network and subjected to a stretching force to recover the original products. Moreover, the nascent TAD moiety can spontaneously and immediately be recombined after dissociation with an indole reaction partners at ambient temperature, thus allowing for the adjustment of the polymer segment conformation and the maintenance of the network integrity by force-reversible behaviors. Overall, our strategy represents a general method to create toughened covalently crosslinked polymer materials with simultaneous enhancement of mechanical strength and ductility, which is quite challenging to achieve by conventional chemical methods. Weak force-activated covalent bonds as crosslink points can increase mechanical strength and ductility in polymers but the bonds, once broken, cannot be reformed in real time under ambient conditions leading to irreversible damage. Here, the authors demonstrate that triazolinedione (TAD)-indole adducts acting as crosslink points enable materials to display already at ambient temperature reversible stress-responsiveness in real time.
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- 2022
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41. Direct Solar Energy-Mediated Synthesis of Tertiary Benzylic Alcohols Using a Metal-Free Heterogeneous Photocatalyst
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Yu Zhang, Shaowei Qin, Nathalie Claes, Waldemar Schilling, Prakash Kumar Sahoo, H. Y. Vincent Ching, Aleksander Jaworski, Filip Lemière, Adam Slabon, Sabine Van Doorslaer, Sara Bals, and Shoubhik Das
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Chemistry ,Renewable Energy, Sustainability and the Environment ,General Chemical Engineering ,Environmental Chemistry ,General Chemistry ,Engineering sciences. Technology - Abstract
Direct hydroxylation via the functionalization of tertiary benzylic C(sp(3))-H bonds is of great significance for obtaining tertiary alcohols, which find wide applications in pharmaceuticals as well as in fine chemical industries. However, current synthetic procedures use toxic reagents, and therefore, the development of a sustainable strategy for the synthesis of tertiary benzylic alcohols is highly desirable. To solve this problem, herein, we report a metal-free heterogeneous photocatalyst to synthesize the hydroxylated products using oxygen as the key reagent. Various benzylic substrates were employed into our mild reaction conditions to afford the desirable products in good to excellent yields. More importantly, the gram-scale reaction was achieved via harvesting direct solar energy and exhibited high quantity of the product. The high stability of the catalyst was proved via recycling the catalyst and spectroscopic analyses. Finally, a possible mechanism was proposed based on electron paramagnetic resonance and other experimental evidence.
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- 2021
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42. Evaluation of table-top lasers for routine infrared ion spectroscopy in the analytical laboratory
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Giel Berden, Rianne E. van Outersterp, Laurent Lamard, Jonathan Martens, Filip Cuyckens, André Peremans, Jos Oomens, and Molecular Spectroscopy (HIMS, FNWI)
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OPOS ,FELIX Molecular Structure and Dynamics ,Materials science ,Infrared ,business.industry ,Free-electron laser ,Mass spectrometry ,Laser ,Biochemistry ,Analytical Chemistry ,Ion ,law.invention ,Chemistry ,law ,Electrochemistry ,Environmental Chemistry ,Optoelectronics ,Quadrupole ion trap ,Spectroscopy ,business - Abstract
Infrared ion spectroscopy is increasingly recognized as a method to identify mass spectrometry-detected analytes in many (bio)chemical areas and its integration in analytical laboratories is now on the horizon. Commercially available quadrupole ion trap mass spectrometers are attractive ion spectroscopy platforms but operate at relatively high pressures. This promotes collisional deactivation which directly interferes with the multiple-photon excitation process required for ion spectroscopy. To overcome this, infrared lasers having a high instantaneous power are required and therefore a majority of analytical studies have been performed at infrared free electron laser facilities. Proliferation of the technique to routine use in analytical laboratories requires table-top infrared lasers and optical parametric oscillators (OPOs) are the most suitable candidates, offering both relatively high intensities and reasonable spectral tuning ranges. Here, we explore the potential of a range of commercially available high-power OPOs for ion spectroscopy, comparing systems with repetition rates of 10 Hz, 20 kHz, 80 MHz and a continuous-wave (cw) system. We compare the performance for various molecular ions and show that the kHz and MHz repetition-rate systems outperform cw and 10 Hz systems in photodissociation efficiency and offer several advantages in terms of cost-effectiveness and practical implementation in an analytical laboratory not specialized in laser spectroscopy., Evaluation of four table-top IR lasers for ion spectroscopy in ion trap mass spectrometers shows high rep-rate lasers offer better photodissociation efficiency and are more cost-effective and practical compared to low rep-rate or cw alternatives.
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- 2021
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43. Impact of wood species on microbial community composition, beer chemistry and sensory characteristics during barrel‐ageing of beer
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Christel Verreth, Gert De Rouck, Kevin J. Verstrepen, Bart Lievens, Sam Crauwels, Valérie Winne, Jasper Buyse, Filip Van Opstaele, Sofie Bossaert, and Beatriz Herrera-Malaver
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Barrel ,Microbial population biology ,Chemistry ,Ageing ,Composition (visual arts) ,Food science ,Beer chemistry ,Industrial and Manufacturing Engineering ,Yeast ,Food Science - Published
- 2021
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44. Inhibition of PIM Kinases in DLBCL Targets MYC Transcriptional Program and Augments the Efficacy of Anti-CD20 Antibodies
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Kristyna Kupcova, Joanna Barankiewicz, Bjoern Chapuy, Anna Szumera-Ciećkiewicz, Anna Polak, Magdalena Winiarska, Joanna Domagala, Dorota Komar, Bartosz Pula, Magdalena Cybulska, Agnieszka Graczyk-Jarzynka, Ewa Jabłońska, Dominika Nowis, Michal Mikula, Michael R. Green, Krzysztof Brzózka, Michał Pawlak, Beata Pyrzynska, Filip Garbicz, Andrea Massimiliano Tomirotti, Malgorzata Statkiewicz, Monika Prochorec-Sobieszek, Kamil Bojarczuk, Aniela Golas, Ondrej Havranek, Jakub Golab, Marta Gajewska, Patryk Górniak, Maciej Szydlowski, Mariana Pacheco-Blanco, Emilia Bialopiotrowicz, Grzegorz Rymkiewicz, and Przemyslaw Juszczynski
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Cancer Research ,PIM1 ,Apoptosis ,Mice, SCID ,PLK1 ,Proto-Oncogene Proteins c-myc ,Mice ,03 medical and health sciences ,Antineoplastic Agents, Immunological ,0302 clinical medicine ,Proto-Oncogene Proteins c-pim-1 ,immune system diseases ,hemic and lymphatic diseases ,Tumor Cells, Cultured ,medicine ,Animals ,Humans ,MCL1 ,Phosphorylation ,Protein Kinase Inhibitors ,Cell Proliferation ,030304 developmental biology ,CD20 ,0303 health sciences ,biology ,Kinase ,Chemistry ,Antigens, CD20 ,medicine.disease ,Xenograft Model Antitumor Assays ,3. Good health ,Lymphoma ,Gene Expression Regulation, Neoplastic ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,Female ,Lymphoma, Large B-Cell, Diffuse ,Rituximab ,Diffuse large B-cell lymphoma - Abstract
The family of PIM serine/threonine kinases includes three highly conserved oncogenes, PIM1, PIM2, and PIM3, which regulate multiple prosurvival pathways and cooperate with other oncogenes such as MYC. Recent genomic CRISPR-Cas9 screens further highlighted oncogenic functions of PIMs in diffuse large B-cell lymphoma (DLBCL) cells, justifying the development of small-molecule PIM inhibitors and therapeutic targeting of PIM kinases in lymphomas. However, detailed consequences of PIM inhibition in DLBCL remain undefined. Using chemical and genetic PIM blockade, we comprehensively characterized PIM kinase–associated prosurvival functions in DLBCL and the mechanisms of PIM inhibition–induced toxicity. Treatment of DLBCL cells with SEL24/MEN1703, a pan-PIM inhibitor in clinical development, decreased BAD phosphorylation and cap-dependent protein translation, reduced MCL1 expression, and induced apoptosis. PIM kinases were tightly coexpressed with MYC in diagnostic DLBCL biopsies, and PIM inhibition in cell lines and patient-derived primary lymphoma cells decreased MYC levels as well as expression of multiple MYC-dependent genes, including PLK1. Chemical and genetic PIM inhibition upregulated surface CD20 levels in an MYC-dependent fashion. Consistently, MEN1703 and other clinically available pan-PIM inhibitors synergized with the anti-CD20 monoclonal antibody rituximab in vitro, increasing complement-dependent cytotoxicity and antibody-mediated phagocytosis. Combined treatment with PIM inhibitor and rituximab suppressed tumor growth in lymphoma xenografts more efficiently than either drug alone. Taken together, these results show that targeting PIM in DLBCL exhibits pleiotropic effects that combine direct cytotoxicity with potentiated susceptibility to anti-CD20 antibodies, justifying further clinical development of such combinatorial strategies. Significance: These findings demonstrate that inhibition of PIM induces DLBCL cell death via MYC-dependent and -independent mechanisms and enhances the therapeutic response to anti-CD20 antibodies by increasing CD20 expression.
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- 2021
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45. The influence of antibiotics on the anammox process — a review
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Aleksandra Ziembińska-Buczyńska, Grzegorz Cema, and Filip Gamoń
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medicine.drug_class ,Health, Toxicology and Mutagenesis ,Antibiotics ,Biomass ,Angiotensin-Converting Enzyme Inhibitors ,Review Article ,Anaerobic Ammonia Oxidation ,Wastewater pollutants ,Angiotensin Receptor Antagonists ,Anammox ,Antibiotic resistance ,medicine ,Environmental Chemistry ,Pollutant ,biology ,Chemistry ,business.industry ,Process activity ,Drug Resistance, Microbial ,General Medicine ,biology.organism_classification ,Pollution ,Antibiotic resistance mechanisms ,Anti-Bacterial Agents ,Biotechnology ,Wastewater ,Sewage treatment ,business ,Bacteria - Abstract
Anaerobic ammonium oxidation (anammox) is one of the most promising processes for the treatment of ammonium-rich wastewater. It is more effective, cheaper, and more environmentally friendly than the conventional process currently in use for nitrogen removal. Unfortunately, anammox bacteria are sensitive to various substances, including heavy metals and organic matter commonly found in the wastewater treatment plants (WWTPs). Of these deleterious substances, antibiotics are recognized to be important. For decades, the increasing consumption of antibiotics has led to the increased occurrence of antibiotics in the aquatic environment, including wastewater. One of the most important issues related to antibiotic pollution is the generation and transfer of antibiotic resistance bacteria (ARB) and antibiotic resistance genes (ARGs). Here, we will discuss the effect of short- and long-term exposure of the anammox process to antibiotic pollutants; with a special focus on the activity of the anammox bacteria, biomass properties, community structures, the presence of antibiotic resistance genes and combined effect of antibiotics with other substances commonly found in wastewater. Further, the defense mechanisms according to which bacteria adapt against antibiotic stress are speculated upon. This review aims to facilitate a better understanding of the influence of antibiotics and other co-pollutants on the anammox process and to highlight future avenues of research to target gaps in the knowledge.
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- 2021
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46. Antagonistic postsynaptic and presynaptic actions of cyclohexanol on neuromuscular synaptic transmission and function
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Kosala N. Dissanayake, Joseph J. McArdle, Michael Eddleston, John E. H. Tattersall, Charlotte L. Whitmore, Filip Margetiny, Richard D. Webster, David J. A. Wyllie, David Beeson, Vishwendra Patel, Cornelia Roesl, Robert Chang-Chih Chou, and Richard R. Ribchester
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Alcohol binding ,Physiology ,Chemistry ,Neuromuscular Junction ,Neuromuscular transmission ,Neurotransmission ,Cyclohexanols ,Motor Endplate ,Synaptic Transmission ,Neuromuscular junction ,Mice ,Nicotinic acetylcholine receptor ,HEK293 Cells ,medicine.anatomical_structure ,Postsynaptic potential ,medicine ,Biophysics ,Animals ,Humans ,Receptors, Cholinergic ,Neuromuscular synaptic transmission ,Acetylcholine receptor - Abstract
Key points Intentional ingestion of agricultural organophosphorus insecticides is a significant public health issue in rural Asia, causing thousands of deaths annually. Survivors may develop a severe myasthenic syndrome or paralysis, associated with increased plasma levels of cyclohexanol, an insecticide solvent metabolite. Analysis of synaptic transmission at neuromuscular junctions in isolated mouse skeletal muscle, using isometric tension recording and microelectrode recording of endplate voltages and currents, showed that cyclohexanol reduced postsynaptic sensitivity to acetylcholine neurotransmitter (reduced quantal size) while simultaneously enhancing evoked transmitter release (increased quantal content). Patch recording from transfected cell lines, together with molecular modelling, indicated that cyclohexanol causes selective, allosteric antagonism of postsynaptic nicotinic acetylcholine receptor and block of presynaptic K+ -channel function. The data provide insight into the cellular and molecular mechanisms of neuromuscular weakness following intentional ingestion of agricultural organophosphorus insecticides. Our findings also extend understanding of the effects of alcohols on synaptic transmission and homeostatic synaptic function. Abstract Intentional ingestion of agricultural organophosphorus insecticides is a significant public health issue in rural Asia, causing thousands of deaths annually. Some survivors develop a severe, acute or delayed myasthenic syndrome. In animal models, similar myasthenia has been associated with increasing plasma concentration of one insecticide solvent metabolite, cyclohexanol. We investigated possible mechanisms using voltage and current recordings from mouse neuromuscular junctions (NMJs) and transfected human cell lines. Cyclohexanol (10-25 mM) reduced EPP amplitudes by 10-40% and enhanced depression during repetitive (2-20 Hz) stimulation by up to 60%. EPP decay was prolonged more than two fold. MEPPs were attenuated by more than 50%. Cyclohexanol inhibited whole-cell currents recorded from CN21 cells expressing human postjunctional acetylcholine receptors (hnAChR) with an IC50 of 3.74 mM. Cyclohexanol (10-20 mM) also caused prolonged episodes of reduced-current, multi-channel bursting in outside-out patch recordings from hnAChR expressed in transfected HEK293T cells, reducing charge transfer by more than 50%. Molecular modelling indicated cyclohexanol binding (-6kcal.mol-1 ) to a previously-identified alcohol binding site on nicotinic AChR α-subunits. Cyclohexanol also increased quantal content of evoked transmitter release by ∼50%. In perineurial recordings, cyclohexanol selectively inhibited pre-synaptic K+ -currents. Modelling indicated cyclohexanol binding (-3.8 kcal.mole-1 ) to voltage-sensitive K+ -channels at the same site as tetraethylammonium (TEA). TEA (10 mM) blocked K+ -channels more effectively than cyclohexanol but EPPs were more prolonged in 20 mM cyclohexanol. The results explain the pattern of neuromuscular dysfunction following ingestion of organophosphorus insecticides containing cyclohexanol precursors and suggest that cyclohexanol may facilitate investigation of mechanisms regulating synaptic strength at NMJs. Graphical Abstract: Cyclohexanol, the principal metabolite of a common agricultural insecticide solvent cyclohexanone, acts both presynaptically and postsynaptically to impair neuromuscular transmission. [1] Cyclohexanol binds to sites in the pore of voltage-sensitive K-channels that also bind the K+ -channel blocker tetraethylammonium (TEA), with the effect of reducing presynaptic motor nerve terminal K+ -currents and increasing quantal content of evoked transmitter release. [2] Simultaneously, cyclohexanol binds allosterically to an alcohol binding site on postsynaptic nicotinic acetylcholine receptors, altering ligand-gating characteristics and reducing charge transfer. The combined, overall effects of [1] and [2] result in reduced amplitude, prolonged depolarization and enhanced synaptic depression of endplate potentials (EPPs), weakening tetanic tension responses and causing fade in twitch responses to low frequency nerve stimulation. These effects mimic myasthenia or paralysis that occur in self-harming individuals who have swallowed significant quantities of organophosphorus insecticide, a significant public health issue in rural Asia. The present findings therefore provide an explanation for these clinical signs; and indicate potential utility of cyclohexanol in further study of mechanisms of neuromuscular synaptic homeostasis. This article is protected by copyright. All rights reserved.
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- 2021
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47. Formation of dihydrophenolic acids and aroma-active volatile phenols by new strains of Limosilactobacillus fermentum
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Katsiaryna Alishevich, Kateřina Sasínová, Jan Bárta, Daniel Koval, Tereza Nešporová, Adéla Ramešová, Štěpán Marhons, Vladimír Filip, Ladislav Čurda, Monika Kumherová, and Jan Kyselka
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biology ,Decarboxylation ,General Chemistry ,Metabolism ,Phenolic acid ,Reductase ,biology.organism_classification ,Biochemistry ,Industrial and Manufacturing Engineering ,Cinnamic acid ,chemistry.chemical_compound ,chemistry ,Polyphenol ,Food science ,Growth inhibition ,Aroma ,Food Science ,Biotechnology - Abstract
Previously undescribed species of Limosilactobacillus fermentum isolated from wholemeal buckwheat sourdough were identified by MALDI-TOF/MS and 16S rRNA analysis. The metabolism of 6 hydroxycinnamic acids by L. fermentum 6P1, 6P2 and 7P2 strains provided mostly o-, m-, p-dihydrocoumaric, dihydroferulic, dihydrocaffeic and dihydrosinapic acids. The ratio of hydroxyphenylpropionic acids to 4-vinylphenols was strain-to-strain specific. Decarboxylation of free cinnamic acid to potentially toxic styrene was low (1.8–23.9 mol. %) in all Limosilactobacillus strains tested. At a concentration of 13.6 mmol/L, reduced p-dihydrocoumaric and dihydroferulic acids were shown to cause less growth inhibition than their precursors, while specific growth rates μ increased significantly. L. fermentum POH with the highest sensitivity to phenolic acids exhibited the lowest ability to reduce hydroxycinnamic acids (11.8–44.5%) by phenolic acid reductase. Metabolomic experiments with chemically labelled D-glucose-d12 provided a deeper insight into electron transfer to polyphenols as the final acceptor. To the best of our knowledge, deuterium transfer to dideuteroferulic acid was observed for the first time.
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- 2021
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48. Analysis of NH 3 ‐TPD Profiles for CuSSZ‐13 SCR Catalyst of Controlled Al Distribution – Complexity Resolved by First Principles Thermodynamics of NH 3 Desorption, IR and EPR Insight into Cu Speciation**
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Piotr Pietrzyk, Edyta Tabor, Kinga Mlekodaj, Kinga Góra-Marek, Bartosz Mozgawa, Zbigniew Sojka, Monika Fedyna, Zhen Zhao, Filip Zasada, and Jiří Dědeček
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Chemistry ,Thermal desorption spectroscopy ,Organic Chemistry ,General Chemistry ,Olation ,Catalysis ,law.invention ,Adsorption ,Nanocrystal ,law ,Desorption ,Physical chemistry ,Zeolite ,Electron paramagnetic resonance - Abstract
NH3 temperature-programmed desorption (NH3 -TPD) is frequently used for probing the nature of the active sites in CuSSZ-13 zeolite for selective catalytic reduction (SCR) of NOx . Herein, we propose an interpretation of NH3 -TPD results, which takes into account the temperature-induced dynamics of NH3 interaction with the active centers. It is based on a comprehensive DFT/GGA+D and first-principles thermodynamic (FPT) modeling of NH3 adsorption on single Cu2+ , Cu+ , [CuOH]+ centers, dimeric [Cu-O-Cu]2+ , [Cu-O22- -Cu]2 species, segregated CuO nanocrystals and Bronsted acid sites (BAS). Theoretical TPD profiles are compared with the experimental data measured for samples of various Si/Al ratios and distribution of Al within the zeolite framework. Copper reduction, its relocation, followed by the intrazeolite olation/oxolation processes, which are concomitant with NH3 desorption, were revealed by electron paramagnetic resonance (EPR) and IR. DFT/FPT results show that the peaks in the desorption profiles cannot be assigned univocally to the particular Cu and BAS centers, since the observed low-, medium- and high-temperature desorption bands have contributions coming from several species, which dynamically change their speciation and redox states during NH3 -TPD experiment. Thus, a rigorous interpretation of the NH3 -TPD profiles of CuSSZ-13 in terms of the strength and concentration of the active centers of a particular type is problematic. Nonetheless, useful connections for molecular interpretation of TPD profiles can be established between the individual component peaks and the corresponding ensembles of the adsorption centers.
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- 2021
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49. Impact of the molar activity and PSMA expression level on [18F]AlF-PSMA-11 uptake in prostate cancer
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Benedicte Descamps, Christian Vanhove, Emma De Coster, Anne Vral, Jeroen Verhoeven, Filip De Vos, Leen Pieters, Ken Kersemans, and Sarah Piron
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Glutamate Carboxypeptidase II ,Male ,Molar ,Proteasome Endopeptidase Complex ,medicine.medical_specialty ,Science ,Urological cancer ,Mice, SCID ,Nod ,Scid mice ,urologic and male genital diseases ,Article ,Glutarates ,Mice ,Prostate cancer ,MEMBRANE ANTIGEN-EXPRESSION ,Mice, Inbred NOD ,Cell Line, Tumor ,Positron Emission Tomography Computed Tomography ,Internal medicine ,Medicine and Health Sciences ,medicine ,Radioligand ,Glutamate carboxypeptidase II ,Animals ,Humans ,Tissue Distribution ,Diagnostics ,Membrane Glycoproteins ,Multidisciplinary ,Chemistry ,Prostatic Neoplasms ,RADIOLIGAND THERAPY ,medicine.disease ,Phosphinic Acids ,Gene Expression Regulation, Neoplastic ,Radiation exposure ,Endocrinology ,Positron-Emission Tomography ,Medicine ,Cancer imaging ,Radiopharmaceuticals ,Target binding ,Neoplasm Transplantation ,Protein Binding - Abstract
This two-part preclinical study aims to evaluate prostate specific membrane antigen (PSMA) as a valuable target for expression-based imaging applications and to determine changes in target binding in function of varying apparent molar activities (MAapp) of [18F]AlF-PSMA-11. For the evaluation of PSMA expression levels, male NOD/SCID mice bearing prostate cancer (PCa) xenografts of C4-2 (PSMA+++), 22Rv1 (PSMA+) and PC-3 (PSMA−) were administered [18F]AlF-PSMA-11 with a medium MAapp (20.24 ± 3.22 MBq/nmol). SUVmean and SUVmax values were respectively 3.22 and 3.17 times higher for the high versus low PSMA expressing tumors (p app, C4-2 and 22Rv1 xenograft bearing mice underwent additional [18F]AlF-PSMA-11 imaging with a high (211.2 ± 38.9 MBq/nmol) and/or low MAapp (1.92 ± 0.27 MBq/nmol). SUV values showed a significantly increasing trend with higher MAapp. Significant changes were found for SUVmean and SUVmax between the high versus low MAapp and medium versus low MAapp (both p app (p = 0.055 and 0.25, respectively). The effect of varying MAapp was more pronounced in low expressing tumors and PSMA expressing tissues (e.g. salivary glands and kidneys). Overall, administration of a high MAapp increases the detection of low expression tumors while also increasing uptake in PSMA expressing tissues, possibly leading to false positive findings. In radioligand therapy, a medium MAapp could reduce radiation exposure to dose-limiting organs with only limited effect on radionuclide accumulation in the tumor.
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- 2021
50. Impact of Artificial Intelligence on Compound Discovery, Design, and Synthesis
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Raquel Rodríguez-Pérez, Jürgen Bajorath, and Filip Miljković
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Chemistry ,business.industry ,General Chemical Engineering ,General Chemistry ,Chemistry (relationship) ,Artificial intelligence ,Mini-Review ,business ,QD1-999 - Abstract
As in other areas, artificial intelligence (AI) is heavily promoted in different scientific fields, including chemistry. Although chemistry traditionally tends to be a conservative field and slower than others to adapt new concepts, AI is increasingly being investigated across chemical disciplines. In medicinal chemistry, supported by computer-aided drug design and cheminformatics, computational methods have long been employed to aid in the search for and optimization of active compounds. We are currently witnessing a multitude of AI-related publications in the medicinal-chemistry-relevant literature and anticipate that the numbers will further increase. Often, advances through AI promoted in such reports are difficult to reconcile or remain questionable, which hampers the acceptance of computational work in interdisciplinary environments. Herein we attempt to highlight selected investigations in which AI has shown promise to impact medicinal chemistry in areas such as compound design and synthesis.
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- 2021
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