49 results on '"Dengke Shen"'
Search Results
2. Radically Enhanced Dual Recognition
- Author
-
Xingang Zhao, J. Fraser Stoddart, Bo Song, Xiao-Yang Chen, Dengke Shen, Yong Wu, Kang Cai, Yang Jiao, Long Zhang, Haochuan Mao, Huang Wu, Hongliang Chen, Yuanning Feng, Charlotte L. Stern, and Michael R. Wasielewski
- Subjects
Chemistry ,Diradical ,Cooperativity ,Viologen ,General Medicine ,General Chemistry ,Catalysis ,law.invention ,Dication ,Crystallography ,Molecular recognition ,Radical ion ,law ,medicine ,Molecule ,Electron paramagnetic resonance ,medicine.drug - Abstract
Complexation between a viologen radical cation (V.+ ) and cyclobis(paraquat-p-phenylene) diradical dication (CBPQT2(.+) ) has been investigated and utilized extensively in the construction of mechanically interlocked molecules (MIMs) and artificial molecular machines (AMMs). The selective recognition of a pair of V.+ using radical-pairing interactions, however, remains a formidable challenge. Herein, we report the efficient encapsulation of two methyl viologen radical cations (MV.+ ) in a size-matched bisradical dicationic host - namely, cyclobis(paraquat-2,6-naphthalene)2(.+) , i.e., CBPQN2(.+) . Central to this dual recognition process was the choice of 2,6-bismethylenenaphthalene linkers for incorporation into the bisradical dicationic host. They provide the space between the two bipyridinium radical cations in CBPQN2(.+) suitable for binding two MV.+ with relatively short (3.05-3.25 A) radical-pairing distances. The size-matched bisradical dicationic host was found to exhibit highly selective and cooperative association with the two MV.+ in MeCN at room temperature. The formation of the tetrakisradical tetracationic inclusion complex - namely, [(MV)2 ⊂CBPQN]4(.+) - in MeCN was confirmed by VT 1 H NMR, as well as by EPR spectroscopy. The solid-state superstructure of [(MV)2 ⊂CBPQN]4(.+) reveals an uneven distribution of the binding distances (3.05, 3.24, 3.05 A) between the three different V.+ , suggesting that localization of the radical-pairing interactions has a strong influence on the packing of the two MV.+ inside the bisradical dicationic host. Our findings constitute a rare example of binding two radical guests with high affinity and cooperativity using host-guest radical-pairing interactions. Moreover, they open up possibilities of harnessing the tetrakisradical tetracationic inclusion complex as a new, orthogonal and redox-switchable recognition motif for the construction of MIMs and AMMs.
- Published
- 2021
- Full Text
- View/download PDF
3. Suit[3]ane
- Author
-
Bo Song, J. Fraser Stoddart, Yu Wang, Yu Tan, Huang Wu, Charlotte L. Stern, Kang Cai, Yuanning Feng, Xiao-Yang Chen, Long Zhang, Dengke Shen, and Yang Jiao
- Subjects
chemistry.chemical_classification ,Acetonitriles ,Magnetic Resonance Spectroscopy ,Pyridines ,Chemistry ,Extramural ,Molecular Conformation ,Temperature ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catechin ,Catalysis ,Unstable molecule ,Molecular conformation ,0104 chemical sciences ,Crystallography ,Colloid and Surface Chemistry ,Biflavonoids ,Cage ,Strong binding ,Alkyl - Abstract
Suitanes are a class of mechanically interlocked molecules (MIMs) that consist of two components: a body with limbs protruding outward and a suit that fits appropriately around it, so that there is no easy way for the suit to be removed from the body. Herein, we report the synthesis and characterization of a suit[3]ane, which contains a benzotrithiophene derivative (THBTT) with three protruding hexyl chains as the body and a 3-fold symmetric, extended pyridinium-based cage, namely, HexaCage6+, as the suit. Central to its realization is effective templation, provided by THBTT during cage formation, an observation that has been supported by the strong binding constant between benzotrithiophene (BTT) and the empty cage. The solid-state structure of the suit[3]ane reveals that the body is confined within the suit's cavity with its alkyl chains protruding outward through the orifices in the cage. Notably, such a seemingly unstable molecule, having three flexible alkyl chains as its only protruding limbs, does not dissociate after prolonged heating in CD3CN at 100 °C under pressure for 7 days. No evidence for guest exchange with the host was observed at this temperature in a 2:1 mixture of THBTT and HexaCage6+ in CD3CN. The results indicate that flexible protruding limbs are sufficient for a suit[3]ane to remain mechanically stable even at high temperatures in solution.
- Published
- 2020
- Full Text
- View/download PDF
4. Molecular-Pump-Enabled Synthesis of a Daisy Chain Polymer
- Author
-
Kang Cai, Dengke Shen, Yang Jiao, Yi Shi, Huang Wu, J. Fraser Stoddart, Chuyang Cheng, Long Zhang, Hongliang Chen, Guo Wei Zhuang, and Yunyan Qiu
- Subjects
chemistry.chemical_classification ,Ratchet ,General Chemistry ,Polymer ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Redox ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Monomer ,chemistry ,Chemical engineering ,Daisy chain - Abstract
The assembly of a kinetically trapped daisy chain polymer under redox control has been achieved with a self-complementary monomer using an energy ratchet mechanism. The monomer is composed of a molecular pump at one end and a cyclobis(paraquat
- Published
- 2020
- Full Text
- View/download PDF
5. Single-Crystal Polycationic Polymers Obtained by Single-Crystal-to-Single-Crystal Photopolymerization
- Author
-
Qing Tu, Xuan Zhang, Marco Rolandi, Douglas Philp, J. Fraser Stoddart, Haoyuan Chen, Penghao Li, Matthew R. Ryder, Yaobin Xu, Omar K. Farha, Zhichang Liu, Peng Li, Gajendra S. Shekhawat, Qing-Hui Guo, Vinayak P. Dravid, Yunyan Qiu, Andrew C.-H. Sue, Manping Jia, Randall Q. Snurr, Hongliang Chen, Zhijie Chen, and Dengke Shen
- Subjects
chemistry.chemical_classification ,Ionic bonding ,General Chemistry ,Polymer ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Colloid and Surface Chemistry ,Photopolymer ,Molecular level ,chemistry ,Chemical engineering ,sense organs ,Single crystal - Abstract
The efficient preparation of single-crystalline ionic polymers and fundamental understanding of their structure-property relationships at the molecular level remains a challenge in chemistry and materials science. Here, we describe the single-crystal structure of a highly ordered polycationic polymer (polyelectrolyte) and its proton conductivity. The polyelectrolyte single crystals can be prepared on a gram-scale in quantitative yield, by taking advantage of an ultraviolet/sunlight-induced topochemical polymerization, from a tricationic monomer-a self-complementary building block possessing a preorganized conformation. A single-crystal-to-single-crystal photopolymerization was revealed unambiguously by in situ single-crystal X-ray diffraction analysis, which was also employed to follow the progression of molecular structure from the monomer, to a partially polymerized intermediate, and, finally, to the polymer itself. Collinear polymer chains are held together tightly by multiple Coulombic interactions involving counterions to form two-dimensional lamellar sheets (1 nm in height) with sub-nanometer pores (5 Å). The polymer is extremely stable under 254 nm light irradiation and high temperature (above 500 K). The extraordinary mechanical strength and environmental stability-in combination with its impressive proton conductivity (∼3 × 10
- Published
- 2020
- Full Text
- View/download PDF
6. Organic Counteranion Co-assembly Strategy for the Formation of γ-Cyclodextrin-Containing Hybrid Frameworks
- Author
-
Yunyan Qiu, Ying-Wei Yang, James A. Cooper, Long Zhang, J. Fraser Stoddart, Yang Jiao, Hongliang Chen, Dengke Shen, Fehaid Alsubaie, Omar K. Farha, Huang Wu, Zhichang Liu, Andrew C.-H. Sue, Kang Cai, Charlotte L. Stern, Xingjie Wang, Peng Li, and Qing-Hui Guo
- Subjects
Superstructure ,Chemistry ,Metal ions in aqueous solution ,Cationic polymerization ,Supramolecular chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Ion ,γ cyclodextrin ,Crystallography ,Colloid and Surface Chemistry ,Group (periodic table) ,Porosity - Abstract
A class of γ-cyclodextrin-containing hybrid frameworks (CD-HFs) has been synthesized, employing γ-cyclodextrin (γ-CD) as the primary building blocks, along with 4-methoxysalicylate (4-MS-) anions as the secondary building blocks. CD-HFs are constructed through the synergistic exploitation of coordinative, electrostatic, and dispersive forces. The syntheses have been carried out using an organic counteranion co-assembly strategy, which allows for the introduction of 4-MS-, in place of inorganic OH-, into the cationic γ-CD-containing metal-organic frameworks (CD-MOFs). Although the packing arrangement of the γ-CD tori in the solid-state superstructure of CD-HFs is identical to that of the previously reported CD-MOFs, CD-HFs crystallize with lower symmetry and in the cuboid space group P43212-when compared to CD-MOF-1, which has the cubic unit cell of I432 space group-on account of the chiral packing of the 4-MS- anions in the CD-HF superstructures. Importantly, CD-HFs have ultramicroporous apertures associated with the pore channels, a significant deviation from CD-MOF-1, as a consequence of the contribution from the 4-MS- anions, which serve as supramolecular baffles. In gas adsorption-desorption experiments, CD-HF-1 exhibits a Brunauer-Emmett-Teller (BET) surface area of 306 m2 g-1 for CO2 at 195 K, yet does not uptake N2 at 77 K, confirming the difference in porosity between CD-HF-1 and CD-MOF-1. Furthermore, the 4-MS- anions in CD-HF-1 can be exchanged with OH- anions, leading to an irreversible single-crystal to single-crystal transformation, with rearrangement of coordinated metal ions. Reversible transformations were also observed in CD-MOF-1 when OH- ions were exchanged for 4-MS- anions, with the space group changing from I432 to R32. This organic counteranion co-assembly strategy opens up new routes for the construction of hybrid frameworks, which are inaccessible by existing de novo MOF assembly methodologies.
- Published
- 2020
- Full Text
- View/download PDF
7. Tuning radical interactions in trisradical tricationic complexes by varying host-cavity sizes
- Author
-
Hai Xiao, Fehaid Alsubaie, Jun Li, Long Zhang, Changsu Cao, Yi Shi, Hongliang Chen, Kang Cai, Yang Jiao, J. Fraser Stoddart, Dengke Shen, Suneal Vemuri, Charlotte L. Stern, Huang Wu, Binbin Cui, and Yunyan Qiu
- Subjects
Chemistry ,Crystallography ,Radical ion ,Supramolecular chemistry ,Molecule ,General Chemistry ,Methyl Viologen ,Binding affinities - Abstract
Although host–guest pairing interactions between bisradical dicationic cyclobis(paraquat-p-phenylene) (BB2(˙+)) and the bipyridinium radical cation (BIPY˙+) have been studied extensively, host molecules other than BB2(˙+) are few and far between., Although host–guest pairing interactions between bisradical dicationic cyclobis(paraquat-p-phenylene) (BB2(˙+)) and the bipyridinium radical cation (BIPY˙+) have been studied extensively, host molecules other than BB2(˙+) are few and far between. Herein, four bisradical dicationic cyclophanes with tunable cavity sizes are investigated as new bisradical dicationic hosts for accommodating the methyl viologen radical cation (MV˙+) to form trisradical tricationic complexes. The structure–property relationships between cavity sizes and binding affinities have been established by comprehensive solution and solid-state characterizations as well as DFT calculations. The association constants of the four new trisradical tricationic complexes are found to range between 7400 and 170 000 M–1, with the strongest one being 4.3 times higher than that for [MV⊂BB]3(˙+). The facile accessibility and tunable stability of these new trisradical tricationic complexes make them attractive redox-controlled recognition motifs for further use in supramolecular chemistry and mechanostereochemistry.
- Published
- 2020
- Full Text
- View/download PDF
8. Stabilizing the Naphthalenediimide Radical within a Tetracationic Cyclophane
- Author
-
Zhichang Liu, Tianyu Jiao, J. Fraser Stoddart, Yang Jiao, Jiawang Zhou, Yuanning Feng, Dengke Shen, Kang Cai, Hao Li, Chuyang Cheng, Michael R. Wasielewski, Guangcheng Wu, Jordan N. Nelson, and Yunyan Qiu
- Subjects
Dimer ,Radical ,General Chemistry ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Biochemistry ,Redox ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,chemistry ,Yield (chemistry) ,Cyclophane - Abstract
Organic radicals are of importance in developing smart materials that have paramagnetic and/or near-infrared optical properties. Their practical applications, however, are limited by the labile nature of the radicals. Here, we demonstrate that by using a tetracationic cyclophane, namely, cyclobis(4,4'-(1,4-phenylene)bispyridine-p-phenylene) (ExBox4+), to encapsulate a naphthalenediimide (NDI) guest, the redox properties of NDI can be modulated. In organic solvents such as MeCN or DMF, ExBox4+ is able to provide the surrounding Coulombic attraction to the NDI•- radical anion and therefore enhance its stability toward oxidation. In water, NDI•- is prone to dimerization, forming its (NDI•-)2 dimer. Under UV-light irradiation, the (NDI•-)2 dimer is observed to disproportionate and yield the dianionic NDI2-. ExBox4+ is able to encapsulate the NDI•- radical anion and prevent its dimerization, and as a consequence, the radical anion is protected from further reduction in a noncovalent manner. We believe that our strategy of modulating the redox properties of NDI by either host-guest recognition or mechanical interlocking can aid and abet the development of radical-based materials, which could be employed in pursuit of applications in many areas, such as transporting spin and charges.
- Published
- 2019
- Full Text
- View/download PDF
9. A Hierarchical Nanoporous Diamondoid Superstructure
- Author
-
Haoyuan Chen, Omar K. Farha, Peng Li, Qing-Hui Guo, Lin Zhang, Yunyan Qiu, Xuan Zhang, Yi Shi, Christos D. Malliakas, Zhichang Liu, Randall Q. Snurr, Matthew R. Ryder, J. Fraser Stoddart, Charlotte L. Stern, Douglas Philp, Yaobin Xu, and Dengke Shen
- Subjects
Materials science ,Nanoporous ,General Chemical Engineering ,Biochemistry (medical) ,Supramolecular chemistry ,Cationic polymerization ,Nanotechnology ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Diamondoid ,01 natural sciences ,Biochemistry ,0104 chemical sciences ,chemistry.chemical_compound ,Octahedron ,chemistry ,Hexafluorophosphate ,Materials Chemistry ,Environmental Chemistry ,Molecule ,0210 nano-technology ,Superstructure (condensed matter) - Abstract
Summary Sophisticated architectures assembled from a single class of subunits by cooperative interactions are ubiquitous in nature. The construction of their artificial mimics, however, remains one of the most formidable challenges facing synthetic chemists. Here, we report a hierarchical diamondoid superstructure—namely, a supramolecular diamond—that is constructed from the multiple-level self-assembly of a highly symmetrical salt, hexakis[(4,4′-bipyridin-1-ium)methylene]benzene hexafluorophosphate. The uniform octahedral single crystals, with 96 cationic organic fragments and 96 counteranions in a unit cell, can be prepared quantitatively in a controllable one-step procedure within seconds at ambient conditions. The sizes of the resulting samples are modulated from 280 nm to 660 μm. The mechanism of the self-assembly was elucidated at the atomic level. As proof of its intrinsically cationic superstructure with mobile anions, the three-dimensional nanoporous framework can exchange efficiently with metal oxoanions. This research shows that precisely tunable hierarchical assemblies can translate charged molecules into complicated architectures.
- Published
- 2019
- Full Text
- View/download PDF
10. Selective Photodimerization in a Cyclodextrin Metal-Organic Framework
- Author
-
Samuel I. Stupp, Huang Wu, Charlotte L. Stern, Long Zhang, Hongliang Chen, Luka Đorđević, Kang Cai, Xiao-Yang Chen, J. Fraser Stoddart, Yu Wang, Qing-Hui Guo, Dengke Shen, Randall Q. Snurr, Haoyuan Chen, and Yang Jiao
- Subjects
Molecular Conformation ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,Colloid and Surface Chemistry ,Structural isomer ,Molecule ,Metal-Organic Frameworks ,chemistry.chemical_classification ,Cyclodextrins ,biology ,Cyclodextrin ,Chemistry ,Enantioselective synthesis ,Active site ,Substrate (chemistry) ,Stereoisomerism ,General Chemistry ,Photochemical Processes ,Cycloaddition ,0104 chemical sciences ,Crystallography ,biology.protein ,Metal-organic framework ,Dimerization - Abstract
For the most part, enzymes contain one active site wherein they catalyze in a serial manner chemical reactions between substrates both efficiently and rapidly. Imagine if a situation could be created within a chiral porous crystal containing trillions of active sites where substrates can reside in vast numbers before being converted in parallel into products. Here, we report how it is possible to incorporate 1-anthracenecarboxylate (1-AC-) as a substrate into a γ-cyclodextrin-containing metal-organic framework (CD-MOF-1), where the metals are K+ cations, prior to carrying out [4+4] photodimerizations between pairs of substrate molecules, affording selectively one of four possible regioisomers. One of the high-yielding regioisomers exhibits optical activity as a result of the presence of an 8:1 ratio of the two enantiomers following separation by high-performance liquid chromatography. The solid-state superstructure of 1-anthracenecarboxylate potassium salt (1-ACK), which is co-crystallized with γ-cyclodextrin, reveals that pairs of substrate molecules are not only packed inside tunnels between spherical cavities present in CD-MOF-1, but also stabilized-in addition to hydrogen-bonding to the C-2 and C-3 hydroxyl groups on the d-glucopyranosyl residues present in the γ-cyclodextrin tori-by combinations of hydrophobic and electrostatic interactions between the carboxyl groups in 1-AC- and four K+ cations on the waistline between the two γ-cyclodextrin tori in the tunnels. These non-covalent bonding interactions result in preferred co-conformations that account for the highly regio- and enantioselective [4+4] cycloaddition during photoirradiation. Theoretical calculations, in conjunction with crystallography, support the regio- and stereochemical outcome of the photodimerization.
- Published
- 2021
11. Ring-in-Ring(s) Complexes Exhibiting Tunable Multicolor Photoluminescence
- Author
-
Yang Jiao, Xiaopeng Li, Huang Wu, Long Zhang, Bo Song, J. Fraser Stoddart, Yu Wang, Yunpeng Cui, Dengke Shen, Leighton O. Jones, Xiao-Yang Chen, Kang Cai, George C. Schatz, Wenqi Liu, and Charlotte L. Stern
- Subjects
Photoluminescence ,Supramolecular chemistry ,General Chemistry ,Chromophore ,010402 general chemistry ,Ring (chemistry) ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Hydrophobic effect ,Crystallography ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,chemistry ,Pyridinium ,Ternary operation ,Cyclophane - Abstract
One ring threaded by two other rings to form a non-intertwined ternary ring-in-rings motif is a challenging task in noncovalent synthesis. Constructing multicolor photoluminescence systems with tunable properties is also a fundamental research goal, which can lead to applications in multidimensional biological imaging, visual displays, and encryption materials. Herein, we describe the design and synthesis of binary and ternary ring-in-ring(s) complexes, based on an extended tetracationic cyclophane and cucurbit[8]uril. The formation of these complexes is accompanied by tunable multicolor fluorescence outputs. On mixing equimolar amounts of the cyclophane and cucurbit[8]uril, a 1:1 ring-in-ring complex is formed as a result of hydrophobic interactions associated with a favorable change in entropy. With the addition of another equivalent of cucurbit[8]uril, a 1:2 ring-in-rings complex is formed, facilitated by additional ion-dipole interactions involving the pyridinium units in the cyclophane and the carbonyl groups in cucurbit[8]uril. Because of the narrowing in the energy gaps of the cyclophane within the rigid hydrophobic cavities of cucurbit[8]urils, the binary and ternary ring-in-ring(s) complexes emit green and bright yellow fluorescence, respectively. A series of color-tunable emissions, such as sky blue, cyan, green, and yellow with increased fluorescence lifetimes, can be achieved by simply adding cucurbit[8]uril to an aqueous solution of the cyclophane. Notably, the smaller cyclobis(paraquat-p-phenylene), which contains the same p-xylylene linkers as the extended tetracationic cyclophane, does not form ring-in-ring(s) complexes with cucurbit[8]uril. The encapsulation of this extended tetracationic cyclophane by both one and two cucurbit[8]urils provides an incentive to design and synthesize more advanced supramolecular systems, as well as opening up a feasible approach toward achieving tunable multicolor photoluminescence with single chromophores.
- Published
- 2020
12. Artificial Molecular Pump Operating in Response to Electricity and Light
- Author
-
Yuanning Feng, Dengke Shen, J. Fraser Stoddart, Yang Jiao, Long Zhang, Jiaqi Liang, Yunyan Qiu, R. Dean Astumian, Xinyi Kuang, and Qing-Hui Guo
- Subjects
Chemistry ,business.industry ,Nanotechnology ,General Chemistry ,Molecular nanotechnology ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Colloid and Surface Chemistry ,Component (UML) ,otorhinolaryngologic diseases ,Electricity ,business - Abstract
The ability to control the relative motions of component parts in molecules is essential for the development of molecular nanotechnology. The advent of mechanically interlocked molecules (MIMs) has enhanced significantly the opportunities for chemists to harness such motions in artificial molecular machines (AMMs). Recently, we have developed artificial molecular pumps (AMPs) capable of producing highly energetic oligo- and polyrotaxanes with high precision. Here, we report the design, synthesis, and operation of an AMP incorporating a photocleavable stopper that allows for the use of orthogonal stimuli. Our approach employs a ratchet mechanism to pump a ring onto a collecting chain, forming an intermediate [2]rotaxane. At a subsequent time, application of light triggers the release of the ring back into the bulk solution with temporal control. This process is monitored by the quenching of the fluorescence of a naphthalene-based fluorophore. This design may find application in the fabrication of molecular transporting systems with on-demand functions.
- Published
- 2020
13. Highly Stable Organic Bisradicals Protected by Mechanical Bonds
- Author
-
Yuanning Feng, Zhichang Liu, Wei Guang Liu, Huang Wu, J. Fraser Stoddart, Haochuan Mao, Yi Shi, William A. Goddard, Yunyan Qiu, Long Zhang, Hongliang Chen, Dengke Shen, Yang Jiao, Michael R. Wasielewski, Charlotte L. Stern, and Kang Cai
- Subjects
Chemistry ,Radical ,Catenane ,Solid-state ,General Chemistry ,010402 general chemistry ,Photochemistry ,Electrochemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,law.invention ,Colloid and Surface Chemistry ,law ,Electrochromism ,Singlet state ,Absorption (chemistry) ,Electron paramagnetic resonance - Abstract
Two new highly charged [2]catenanes—namely, mHe[2]C·6PF₆ and mHo[2]C·6PF₆—were synthesized by exploiting radical host–guest templation between derivatives containing BIPY•+ radical cations and the meta analogue of cyclobis(paraquat-p-phenylene). In contrast to related [2]catenanes that have been isolated as air-stable monoradicals, both mHe[2]C·6PF₆ and mHo[2]C·6PF₆ exist as air-stable singlet bisradicals, as evidenced by both X-ray crystallography in the solid state and EPR spectroscopy in solution. Electrochemical studies indicate that the first two reduction peaks of these two [2]catenanes are shifted significantly to more positive potentials, a feature which is responsible for their extraordinary stability in air. The mixed-valence nature of the mono- and bisradical states endows them with unique NIR absorption properties, e.g., NIR absorption bands for the mono- and bisradical states observed at ∼1800 and ∼1450 nm, respectively. These [2]catenanes are potentially useful in applications that include NIR photothermal conversion, UV–vis–NIR multiple-state electrochromic materials, and multiple-state memory devices. Our findings highlight the principle of “mechanical-bond-induced stabilization” as an efficient strategy for designing persistent organic radicals.
- Published
- 2020
14. Selective Extraction of C70 by a Tetragonal Prismatic Porphyrin Cage
- Author
-
Charlotte L. Stern, Dengke Shen, François Diederich, J. Fraser Stoddart, Yi Shi, Qing-Hui Guo, Kang Cai, Yunyan Qiu, Jiawang Zhou, Michael R. Wasielewski, Hai Xiao, William A. Goddard, and Zhichang Liu
- Subjects
Fullerene ,010405 organic chemistry ,Supramolecular chemistry ,Cationic polymerization ,Viologen ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Porphyrin ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,Tetragonal crystal system ,Crystallography ,Colloid and Surface Chemistry ,chemistry ,medicine ,Cage ,Cyclophane ,medicine.drug - Abstract
Along with the advent of supramolecular chemistry, research on fullerene receptors based on noncovalent bonding interactions has attracted a lot of attention. Here, we present the design and synthesis of a cationic molecular cage: a cyclophane composed of two tetraphenylporphyrins, bridged face-to-face by four viologen units in a rhomboid prismatic manner. The large cavity inside the cage, as well as the favorable donor–acceptor interactions between the porphyrin panels and the fullerene guests, enables the cage to be an excellent fullerene receptor. The 1:1 host–guest complexes formed between the cage and both C60 and C70 were characterized in solution by HRMS and NMR, UV–vis and fluorescence spectroscopies, and confirmed in the solid state by single-crystal X-ray diffraction analyses. The results from solution studies reveal that the cage has a much stronger binding for C70 than for C60, resulting in a selective extraction of C70 from a C60-enriched fullerene mixture (C60/C70 = 10/1), demonstrating the ...
- Published
- 2018
- Full Text
- View/download PDF
15. Epitaxial Growth of γ-Cyclodextrin-Containing Metal–Organic Frameworks Based on a Host–Guest Strategy
- Author
-
Zhichang Liu, Gang Wang, Xirui Gong, Yi Shi, Chung Wei Kung, Peng Li, Qing-Hui Guo, Tobin J. Marks, Ji-Min Han, J. Fraser Stoddart, Dengke Shen, Youssry Y. Botros, Antonio Facchetti, Chuyang Cheng, Andrew C.-H. Sue, Kang Cai, Omar K. Farha, and Hongliang Chen
- Subjects
Chemistry ,Conductance ,02 engineering and technology ,General Chemistry ,Conductivity ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Epitaxy ,Electrochemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Colloid and Surface Chemistry ,Chemical engineering ,Monolayer ,Molecule ,Metal-organic framework ,Crystallite ,0210 nano-technology - Abstract
A class of metal-organic frameworks (MOFs)-namely CD-MOFs-obtained from natural products has been grown in an epitaxial fashion as films on the surfaces of glass substrates, which are modified with self-assembled monolayers (SAMs) of γ-cyclodextrin (γ-CD) molecules. The SAMs are created by host-guest complexation of γ-CD molecules with surface-functionalized pyrene units. The CD-MOF films have continuous polycrystalline morphology with a structurally out-of-plane ( c-axial) orientation, covering an area of several square millimeters, with a thickness of ∼2 μm. Furthermore, this versatile host-guest strategy has been applied successfully in the growth of CD-MOFs as the shell on the curved surface of microparticles as well as in the integration of CD-MOF films into electrochemical devices for sensing carbon dioxide. In striking contrast to the control devices prepared from CD-MOF crystalline powders, these CD-MOF film-based devices display an enhancement in proton conductance of up to 300-fold. In addition, the CD-MOF film-based device exhibits more rapid and highly reversible CO2-sensing cycles under ambient conditions, with a 50-fold decrease in conductivity upon exposure to CO2 for 3 s which is recovered within 10 s upon re-exposure to air.
- Published
- 2018
- Full Text
- View/download PDF
16. Mixed-Valence Superstructure Assembled from a Mixed-Valence Host–Guest Complex
- Author
-
Dengke Shen, Yu Zhang, J. Fraser Stoddart, William A. Goddard, Michael R. Wasielewski, Amy A. Sarjeant, Zhichang Liu, Wei Guang Liu, Marco Frasconi, and Scott M. Dyar
- Subjects
charge-transfer interactions ,electron-transfer ,radicals ,viologen ,receptors ,Supramolecular chemistry ,Electron ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Quantum chemistry ,Redox ,Catalysis ,law.invention ,Colloid and Surface Chemistry ,law ,medicine ,Methyl Viologen ,Electron paramagnetic resonance ,Valence (chemistry) ,010405 organic chemistry ,Chemistry ,Viologen ,General Chemistry ,0104 chemical sciences ,Crystallography ,medicine.drug - Abstract
Herein, we report an unprecedented mixed-valence crystal superstructure that consists of a 2:1 host–guest complex [MV⊂(CBPQT)_2]^(2/3+) [MV = methyl viologen, CBPQT = cyclobis(paraquat-p-phenylene)]. One electron is distributed statistically between three [MV⊂(CBPQT)_2]•+ composed of a total of 15 viologen units. The mixed-valence state is validated by single-crystal X-ray crystallography, which supports an empirical formula of [MV⊂(CBPQT)_2]_3·(PF_6)_2 for the body-centered cubic superstructure. Electron paramagnetic resonance provides further evidence of electron delocalization. Quantum chemistry calculations confirm the mixed-valence state in the crystal superstructure. Our findings demonstrate that precise tuning of the redox states in host–guest systems can lead to a promising supramolecular strategy for achieving long-range electron delocalization in solid-state devices.
- Published
- 2018
- Full Text
- View/download PDF
17. Innenrücktitelbild: Radically Enhanced Dual Recognition (Angew. Chem. 48/2021)
- Author
-
Huang Wu, Dengke Shen, Michael R. Wasielewski, Bo Song, Yang Jiao, Haochuan Mao, Xiao-Yang Chen, Xingang Zhao, Charlotte L. Stern, Yuanning Feng, J. Fraser Stoddart, Yong Wu, Long Zhang, Hongliang Chen, and Kang Cai
- Subjects
Molecular recognition ,Chemistry ,Nanotechnology ,General Medicine ,DUAL (cognitive architecture) - Published
- 2021
- Full Text
- View/download PDF
18. TetrazineBox: A Structurally Transformative Toolbox
- Author
-
J. Fraser Stoddart, Jiawang Zhou, Yunyan Qiu, Dengke Shen, Minh T. Nguyen, Jiaqi Liang, Penghao Li, Haochuan Mao, Qing-Hui Guo, Michael R. Wasielewski, Yuanning Feng, and Zhichang Liu
- Subjects
Chemistry ,Supramolecular chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Combinatorial chemistry ,Catalysis ,Molecular machine ,0104 chemical sciences ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Molecule ,Electronic properties ,Cyclophane ,Binding affinities - Abstract
Synthetic macrocycles capable of undergoing allosteric regulation by responding to versatile external stimuli are the subject of increasing attention in supramolecular science. Herein, we report a structurally transformative tetracationic cyclophane containing two 3,6-bis(4-pyridyl)-l,2,4,5-tetrazine (4-bptz) units, which are linked together by two p-xylylene bridges. The cyclophane, which possesses modular redox states and structural post-modifications, can undergo two reversibly consecutive two-electron reductions, affording first its bisradical dicationic counterpart, and then subsequently the fully reduced species. Furthermore, one single-parent cyclophane can afford effectively three other new analogs through box-to-box cascade transformations, taking advantage of either reductions or an inverse electron-demand Diels-Alder (IEDDA) reaction. While all four new tetracationic cyclophanes adopt rigid and symmetric box-like conformations, their geometries in relation to size, shape, electronic properties, and binding affinities toward polycyclic aromatic hydrocarbons can be readily regulated. This structurally transformative tetracationic cyclophane performs a variety of new tasks as a result of structural post-modifications, thus serving as a toolbox for probing the radical properties and generating rapidly a range of structurally diverse cyclophanes by efficient divergent syntheses. This research lays a solid foundation for the introduction of the structurally transformative tetracationic cyclophane into the realm of mechanically interlocked molecules and will provide a toolbox to construct and operate intelligent molecular machines.
- Published
- 2020
19. Germanium Nanograin Decoration on Carbon Shell: Boosting Lithium-Storage Properties of Silicon Nanoparticles
- Author
-
Binwei Zhang, Dengke Shen, Yunxiao Wang, Renyuan Zhang, Wei Luo, Shi Xue Dou, Jianping Yang, and Hua-Kun Liu
- Subjects
Materials science ,Silicon ,chemistry.chemical_element ,Nanoparticle ,Nanotechnology ,Germanium ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Thermal diffusivity ,Electrochemistry ,01 natural sciences ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,Anode ,Biomaterials ,chemistry ,Electrode ,Lithium ,0210 nano-technology - Abstract
A novel heterostructured Si@C@Ge anode is developed via a two-step sol–gel method. A facile and straightforward Ge decoration significantly boosts the Li-storage performance of core–shell Si@C nanoparticles on both mechanics and kinetics. The Si@C@Ge anode shows unprecedented electrochemical performance in terms of accessible capacity, cycling stability, and rate capability when compared to those of a core–shell Si@C anode. Based on the experimental results and analysis of the mechanism, it is evident that high-conductivity Ge nanograins on the surface facilitates the Li diffusivity and electron transport and guarantees high ion accessibility. Moreover, it is the Ge nanograins that serve as buffering cushion to tolerate the mechanic strain distribution on the electrode during lithiation/delithiation processes.
- Published
- 2016
- Full Text
- View/download PDF
20. Carbon functionalized mesoporous silica-based gas sensors for indoor volatile organic compounds
- Author
-
Junchen Chen, Manas Pal, Dongyuan Zhao, Dengke Shen, Wei Li, Yupu Liu, Yujuan Zhao, Haijun Yu, and Bo Tu
- Subjects
Nanocomposite ,Materials science ,Inorganic chemistry ,chemistry.chemical_element ,02 engineering and technology ,Mesoporous silica ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Ethylbenzene ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Biomaterials ,chemistry.chemical_compound ,Mesoporous organosilica ,Colloid and Surface Chemistry ,chemistry ,0210 nano-technology ,Benzene ,Mesoporous material ,Carbon ,Dichloromethane - Abstract
Indoor organic gaseous pollution is a global health problem, which seriously threats the health and life of human all over the world. Hence, it is important to fabricate new sensing materials with high sensitivity and efficiency for indoor volatile organic compounds. In this study, a series of ordered mesoporous silica-based nanocomposites with uniform carbon coatings on the internal surface of silica mesopore channels were synthesized through a simple template-carbonization strategy. The obtained mesoporous silica-carbon nanocomposites not only possess ordered mesostructures, high surface areas (up to ∼759m(2)g(-1)), large and tunable pore sizes (2.6-10.2nm), but also have the improved hydrophobicity and anti-interference capability to environmental humidity. The sensing performances of the mesoporous silica-carbon nanocomposites to volatile organic compounds, such as ethylbenzene, methylbenzene, benzene, methanol, acetone, formaldehyde, dichloromethane and tetrahydrofuran, were systematically investigated. The relationships between the sensing performances and their properties, including mesostructures, surface areas, pore sizes, carbon contents and surface hydrophilic/hydrophobic interactions, have been achieved. The mesoporous silica-carbon nanocomposites with hexagonal mesostructure exhibit outstanding performance at room temperature to benzene and acetone with high responses, short response (2-3s) and recovery (16-19s) time, strong anti-interference to environmental humidity, and long-term stability (less than ∼5% loss of the frequency shifts after 42days). Therefore, the obtained mesoporous silica-carbon nanocomposites have a hopeful prospect in the field of environmental air quality monitoring.
- Published
- 2016
- Full Text
- View/download PDF
21. A Dynamic Tetracationic Macrocycle Exhibiting Photoswitchable Molecular Encapsulation
- Author
-
J. Fraser Stoddart, Ommid Anamimoghadam, Cristian Pezzato, Charlotte L. Stern, Yu Liu, Dengke Shen, Yong Chen, Zhichang Liu, Kang Cai, Long Zhang, and Huang Wu
- Subjects
Molecular switch ,Anthracene ,General Chemistry ,Molecular encapsulation ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Combinatorial chemistry ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,symbols.namesake ,Colloid and Surface Chemistry ,Molecular recognition ,chemistry ,symbols ,Molecule ,Pyridinium ,van der Waals force ,Cyclophane - Abstract
Designing macrocycles with appropriate molecular recognition features that allow for the integration of suitable external stimuli to control host-guest processes is a challenging endeavor which enables molecular containers to solubilize, stabilize, and separate chemical entities in an externally controllable manner. Herein, we introduce photo- and thermal-responsive elements into a semi-rigid tetracationic cyclophane, OPVEx2Box4+, that is composed of oligo( p-phenylenevinylene) pyridinium units and the biphenylene-bridged 4,4-bipyridinium extended viologens and adopts a rectangle-like geometry. It transpires that when the photoactive oligo( p-phenylenevinylene) pyridinium unit is incorporated in a macrocyclic scaffold, its reversibility is dramatically improved, and the configurations of the cyclophane can go back and forth between ( EE)- and ( EZ)-isomers upon alternating blue light irradiation and heating. When the macrocycle is found in its ( EE)-configuration, it is capable of binding various π-electron-rich guests-e.g., anthracene and perylene-as well as π-electron-deficient guests-e.g., 9,10-anthraquinone and 5,12-tetracenequinone-through charge-transfer and van der Waals interactions. When irradiated with blue light, the ( EE)-isomer of the cyclophane can be transformed successfully to the ( EZ)-isomer, resulting in the switching off of the binding affinity for guest molecules, which are bound once again upon heating. The use of light and heat as external stimuli to control host-guest interactions involving a multi-responsive host and various guests provides us with a new opportunity to design and construct more-advanced molecular switches and machines.
- Published
- 2019
22. Hierarchically Engineered Mesoporous Metal-Organic Frameworks toward Cell-free Immobilized Enzyme Systems
- Author
-
B. Layla Mehdi, Omar K. Farha, Diego A. Gómez-Gualdrón, Qishui Chen, Alice Dohnalkova, Dengke Shen, Ryther Anderson, Furkan M. Cetin, Peng Li, Jacek Jagiello, Nicolaas A. Vermeulen, Abdullah M. Asiri, Timothy C. Wang, Nigel D. Browning, and J. Fraser Stoddart
- Subjects
Immobilized enzyme ,General Chemical Engineering ,02 engineering and technology ,Nicotinamide adenine dinucleotide ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Cofactor ,chemistry.chemical_compound ,Materials Chemistry ,Environmental Chemistry ,chemistry.chemical_classification ,biology ,Chemistry ,Biochemistry (medical) ,Substrate (chemistry) ,General Chemistry ,021001 nanoscience & nanotechnology ,Combinatorial chemistry ,0104 chemical sciences ,Enzyme ,biology.protein ,Metal-organic framework ,NAD+ kinase ,0210 nano-technology ,Mesoporous material - Abstract
Summary Highly efficient cell-free enzymatic systems are typically difficult to achieve in traditional immobilized enzyme systems because of the lack of optimal spatial control of enzyme localization, substrate and product diffusion, and enzyme and coenzyme accessibility. Here, we report a strategy for expanding the pore apertures (from 3.3 to 6.7 nm) of a series of Zr-based metallic-organic frameworks (MOFs) (termed NU-100x , x = 3, 4, 5, 6, 7) with interconnected hierarchical pores by maintaining precise control of torsional angles associated with the linkers. As a proof of concept, we use the expanded NU-100x MOF structures to encapsulate lactate dehydrogenase (LDH) and demonstrate the use of the captured protein in a cell-free biosynthetic catalytic system. Remarkably, LDH immobilized in the large pores of the MOF is accessible to nicotinamide adenine dinucleotide coenzymes (NAD and NADH), allowing for in situ coenzyme regeneration leading to higher activity than that of the free enzyme.
- Published
- 2018
23. Graphitic Carbon Conformal Coating of Mesoporous TiO2 Hollow Spheres for High-Performance Lithium Ion Battery Anodes
- Author
-
Dengke Shen, Wei Li, Dongyuan Zhao, Hao Liu, and Guoxiu Wang
- Subjects
Anatase ,Conformal coating ,chemistry.chemical_element ,Nanotechnology ,General Chemistry ,Microstructure ,7. Clean energy ,Biochemistry ,Catalysis ,Lithium-ion battery ,Anode ,Colloid and Surface Chemistry ,Chemical engineering ,chemistry ,Specific surface area ,Lithium ,Mesoporous material - Abstract
Rational design and controllable synthesis of TiO2 based materials with unique microstructure, high reactivity, and excellent electrochemical performance for lithium ion batteries are crucially desired. In this paper, we developed a versatile route to synthesize hollow TiO2/graphitic carbon (H-TiO2/GC) spheres with superior electrochemical performance. The as-prepared mesoporous H-TiO2/GC hollow spheres present a high specific surface area (298 m(2) g(-1)), a high pore volume (0.31 cm(3) g(-1)), a large pore size (∼5 nm), well-defined hollow structure (monodispersed size of 600 nm and inner diameter of ∼400 nm, shell thickness of 100 nm), and small nanocrystals of anatase TiO2 (∼8 nm) conformably encapsulated in ultrathin graphitic carbon layers. As a result, the H-TiO2/GC hollow spheres achieve excellent electrochemical reactivity and stability as an anode material for lithium ion batteries. A high specific capacity of 137 mAh g(-1) can be achieved up to 1000 cycles at a current density of 1 A g(-1) (5 C). We believe that the mesoporous H-TiO2/GC hollow spheres are expected to be applied as a high-performance electrode material for next generation lithium ion batteries.
- Published
- 2015
- Full Text
- View/download PDF
24. Synthesis of Mesoporous Silica/Reduced Graphene Oxide Sandwich-Like Sheets with Enlarged and 'Funneling' Mesochannels
- Author
-
Manas Pal, Wenxing Wang, Hongwei Zhu, Yuhui Li, Yujuan Zhao, Fan Zhang, Yupu Liu, Xiaomin Li, Dongyuan Zhao, Chi Yao, Yong Wei, Wei Li, Ahmed Mohamed El−Toni, Chun Wang, Lei Chen, Renyuan Zhang, and Dengke Shen
- Subjects
Pore size ,Materials science ,Graphene ,General Chemical Engineering ,Simulated body fluid ,Oxide ,Nanotechnology ,General Chemistry ,Mesoporous silica ,law.invention ,Solvent ,Sandwich like ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,law ,Materials Chemistry ,High surface area - Abstract
Here, we report the synthesis of reduced graphene oxide@mesoporous silica (denoted as rGO@mSiO2) sandwich-like sheets by an oil–water biphase stratification approach. The resultant rGO@mSiO2 nanosheets possess a uniform sandwich-like structure, ultrathin thickness (∼50 nm), large aspect ratio, high surface area (∼755 m2/g), and enlarged and tunable pore size (from 2.8 to 8.9 nm). Significantly, the mesochannels are oriented perpendicularly to graphene surfaces and shaped like a funnel, which facilitates drug loading and releasing. The influences of the concentration of precursor, solvent, GO sheet, and reaction temperature on the formation of the sandwich-like rGO@mSiO2 nanosheets have been systematically investigated. The resultant nanosheets with a pore size of ∼8.9 nm show the maximum loading capacity of bovine β-lactoglobulin (55.1 wt %). The protein releasing process in the simulated body fluid suggests that the release can be controlled from 20 to 60 h simply by adjusting the pore size. In addition,...
- Published
- 2015
- Full Text
- View/download PDF
25. Rare Earth Core/Shell Nanobarcodes for Multiplexed Trace Biodetection
- Author
-
Xiaomin Li, Dengke Shen, Dan Zhu, Chunhai Fan, Lei Zhou, Fan Zhang, and Lei Chen
- Subjects
chemistry.chemical_classification ,Nanostructure ,Biomolecule ,Rare earth ,Nanoparticle ,Nanotechnology ,Multiplexing ,Chemistry Techniques, Analytical ,Nanostructures ,Trace Elements ,Analytical Chemistry ,Highly sensitive ,Core shell ,chemistry ,Scanning transmission electron microscopy ,Metals, Rare Earth - Abstract
Multiplexed detection technology has been attractive for its simultaneous assay of several analytes, which play significant roles in applications such as screening for combinatorial chemistry, genetic analysis, and clinical diagnostics. This work reports a novel and potentially powerful encoding system based upon dispersible suspension arrays of multilayer rare earth core/shell nanoparticles that are capable of multiplexed, high-sensitivity reporting for biomolecule detection by the Z-contrast imaging. These nanobarcode arrays are encoded by nanostructure design based on different atomic numbers. With the well-resolved high-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) decoding technique, many thousands of unique nanobarcodes can be identified by multilayer core/shell nanostructure. Their applications to multiplexed biodetection of DNA demonstrated the highly sensitive (picomole) features of this novel nanobarcode system.
- Published
- 2015
- Full Text
- View/download PDF
26. Correction: Tuning radical interactions in trisradical tricationic complexes by varying host-cavity sizes
- Author
-
J. Fraser Stoddart, Hai Xiao, Suneal Vemuri, Binbin Cui, Dengke Shen, Long Zhang, Charlotte L. Stern, Hongliang Chen, Jun Li, Fehaid Alsubaie, Changsu Cao, Kang Cai, Yi Shi, Huang Wu, Yang Jiao, and Yunyan Qiu
- Subjects
Host (biology) ,Chemistry ,Chemical physics ,General Chemistry - Abstract
Correction for ‘Tuning radical interactions in trisradical tricationic complexes by varying host-cavity sizes’ by Kang Cai et al., Chem. Sci., 2020, DOI: 10.1039/c9sc04860j.
- Published
- 2020
- Full Text
- View/download PDF
27. Highly Reversible and Large Lithium Storage in Mesoporous Si/C Nanocomposite Anodes with Silicon Nanoparticles Embedded in a Carbon Framework
- Author
-
Yuanjin Du, Jianping Yang, Hua-Kun Liu, Renyuan Zhang, Zaiping Guo, Ahmed A. Elzatahry, Dan Li, Dengke Shen, and Dongyuan Zhao
- Subjects
Materials science ,Nanocomposite ,Silicon ,Mechanical Engineering ,chemistry.chemical_element ,Nanoparticle ,Nanotechnology ,Mesoporous organosilica ,chemistry ,Mechanics of Materials ,General Materials Science ,Lithium ,Mesoporous material ,Carbon ,Faraday efficiency - Abstract
A magnesiothermic reduction approach is designed to synthesize mesoporous Si/C nanocomposites with ultrasmall, uniform silicon nanoparticles (ca. 3 nm) embedded in a rigid mesoporous carbon framework. The resultant mesoporous Si/C nanocomposites present excellent performance with high reversible capacity, good Coulombic efficiency and rate capability, and outstanding cycling stability in lithium-ion battery applications.
- Published
- 2014
- Full Text
- View/download PDF
28. NIR-Triggered Release of Caged Nitric Oxide using Upconverting Nanostructured Materials
- Author
-
Galen D. Stucky, Dengke Shen, Xiaoming Li, Peter C. Ford, Jianping Yang, Rui Wang, Fan Zhang, Dongyuan Zhao, John V. Garcia, and Chi Yao
- Subjects
Materials science ,Infrared Rays ,Metal Nanoparticles ,Context (language use) ,Nanotechnology ,Nitric Oxide ,Nanomaterials ,Nitric oxide ,Biomaterials ,Fluorides ,chemistry.chemical_compound ,Drug Delivery Systems ,Triggered release ,Yttrium ,General Materials Science ,Tumor growth ,Ytterbium ,Nanostructured materials ,General Chemistry ,Small molecule ,Photon upconversion ,chemistry ,Spectrophotometry ,Biophysics ,Lasers, Semiconductor ,Iron Compounds ,Erbium ,Nitroso Compounds ,Biotechnology - Abstract
In this manuscript, a novel strategy for the therapeutic delivery of nitric oxide to physiological targets is described. Nitric oxide (NO) is a key vasodilator in mammalian cardiovascular systems and has been shown to sensitize tissue to γ -radiation. However, photochemical NO precursors that can be activated by these near-infrared (NIR) wavelengths are extremely limited. Herein, we have addressed this issue by utilizing the known NIR to visible upconversion properties of lanthanide cations doped NaYF 4 nanocrystals. This result is a potential game changer in multiphoton excitation based therapeutic delivery of NO and other small molecule bioregulators. The bioregulatory molecule nitric oxide (NO) plays important roles in cancer biology and has been implicated in both tumor growth and suppression. [ 1 ] Furthermore, NO is a γ -radiation sensitizer that can enhance selective killing of neoplastic tissues. For these reasons, there is considerable interest in developing methods for NO delivery to specifi c physiological targets. In this context, several laboratories have explored photoactivated NO delivery to specifi c tissues upon demand. [ 2‐7 ] A key advantage of photochemical triggering
- Published
- 2012
- Full Text
- View/download PDF
29. Ca2+-induced binding of anticoagulation factor II from the venom of Agkistrodon acutus with factor IX
- Author
-
Yan Zhang, Xiaolong Xu, Dengke Shen, Xincheng Yan, Jiajia Song, and Mingchun Guo
- Subjects
Circular dichroism ,Biophysics ,digestive system ,Biochemistry ,Factor IX ,Biomaterials ,In vivo ,Crotalid Venoms ,medicine ,Animals ,Blood Coagulation ,Prothrombin time ,Gla domain ,medicine.diagnostic_test ,Chemistry ,Circular Dichroism ,Binding protein ,Organic Chemistry ,General Medicine ,Surface Plasmon Resonance ,Molecular biology ,digestive system diseases ,Rats ,Coagulation ,Calcium ,Electrophoresis, Polyacrylamide Gel ,Agkistrodon ,medicine.drug ,Partial thromboplastin time - Abstract
Anticoagulation factor II (ACF II), a coagulation factor X- binding protein from the venom of Agkistrodon acutus has both anticoagulant and hypotensive activities. Previous studies show that ACF II binds specifically with activated factor X (FXa) in a Ca2+-dependent manner and inhibits intrinsic coagulation pathway. In this study, the inhibition of extrinsic coagulation pathway by ACF II was measured in vivo by prothrombin time assay and the binding of ACF II to factor IX (FIX) was investigated by native polyacrylamide gel electrophoresis and surface plasmon resonance (SPR). The results indicate that ACF II also inhibits extrinsic coagulation pathway, but does not inhibit thrombin activity. ACF II also binds with FIX with high binding affinity in a Ca2+-dependent manner and their maximal binding occurs at about 0.1 mM Ca2+. ACF II has similar binding affinity to FIX and FX as determined by SPR. Ca2+ has a slight effect on the secondary structure of FIX as determined by circular dichroism spectroscopy. Ca2+ ions are required to maintain in vivo function of FIX Gla domain for its recognition of ACF II. However, Ca2+ at high concentrations (>0.1 mM) inhibits the binding of ACF II to FIX. Ca2+ functions as a switch for the binding between ACF II and FIX. ACF II extends activated partial thromboplastin time more strongly than prothrombin time, suggesting that the binding of ACF II with FIX may play a dominant role in the anticoagulation of ACF II in vivo. © 2012 Wiley Periodicals, Inc. Biopolymers 97: 818–824, 2012.
- Published
- 2012
- Full Text
- View/download PDF
30. Anticoagulation factor I, a snaclec (snake C-type lectin) from Agkistrodon acutus venom binds to FIX as well as FX: Ca2+ induced binding data
- Author
-
Xiaolong Xu, Xincheng Yan, Dengke Shen, Mingchun Guo, Yan Zhang, and Jiajia Song
- Subjects
Electrophoresis ,Thrombin Time ,Complement factor I ,Plasma protein binding ,Thrombin time ,Toxicology ,digestive system ,Factor IX ,In vivo ,C-type lectin ,Crotalid Venoms ,medicine ,Animals ,Lectins, C-Type ,Gla domain ,medicine.diagnostic_test ,Chemistry ,Anticoagulants ,Anatomy ,digestive system diseases ,Spectrometry, Fluorescence ,Coagulation ,Factor Xa ,Prothrombin Time ,Biophysics ,Calcium ,Agkistrodon ,Protein Binding ,medicine.drug - Abstract
Anticoagulation factor I (ACF I), a snake C-type lectin (snaclec) from the venom of Agkistrodon acutus binds specifically with activated factor X (FXa) in a Ca2+-dependent manner and prolongs the blood-clotting time in vitro. In this study, the inhibition of the coagulation pathway by ACF I was measured in vivo by activated partial thromboplastin time and prothrombin time assays and the binding of ACF I to factor IX (FIX) was investigated by native PAGE and surface plasmon resonance. The results indicate that ACF I inhibits both intrinsic and extrinsic coagulation pathways, but does not inhibit thrombin activity. ACF I also binds FIX in a Ca2+-dependent manner and their maximal binding occurs at 0.25 mM Ca2+. ACF I has a higher binding-affinity to FIX than to FX. Ca2+ is required to maintain in vivo function of FIX Gla domain for its recognition of ACF I. However, Ca2+ at high concentrations (>0.25 mM) inhibits the binding of ACF I to FIX. Ca2+ functions as a switch for the binding between ACF I and FIX. The results suggest that the binding of ACF I with FIX may play a dominant role in the anticoagulation activity of ACF I in vivo.
- Published
- 2012
- Full Text
- View/download PDF
31. Mg(II)-induced binding of factor IX-binding protein from the venom of Agkistrodon Halys Pallas with factor Xa
- Author
-
Hao Wu, Dengke Shen, Lili Peng, Xiaolong Xu, Liyun Zhang, Jiajia Song, and Yan Zhang
- Subjects
inorganic chemicals ,Stereochemistry ,Venom ,Viper Venoms ,Plasma protein binding ,Calorimetry ,Biology ,Toxicology ,chemistry.chemical_compound ,medicine ,Animals ,Magnesium ,Surface plasmon resonance ,Factor IX ,Gla domain ,Binding protein ,Factor X ,Anticoagulants ,Isothermal titration calorimetry ,Anatomy ,Surface Plasmon Resonance ,Zinc ,chemistry ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Factor Xa ,Calcium ,Electrophoresis, Polyacrylamide Gel ,Agkistrodon ,Isoelectric Focusing ,Protein Binding ,medicine.drug - Abstract
Factor IX-binding protein (AHP IX-bp), a Ca2+- and Zn2+-binding protein from the venom of Agkistrodon Halys Pallas was reported to bind specifically with factor IX in a Zn2+-dependent manner. Here we have purified AHP IX-bp by a simple two-step of chromatography procedure and found that AHP IX-bp also binds factor Xa (FXa) with high binding-affinity in a Mg2+-dependent manner. Although Mg2+ ions have a significantly low binding-affinity for apo-AHP IX-bp as determined by isothermal titration calorimetry, they can induce the binding of apo-AHP IX-bp with FXa even in the absence of Ca2+ as determined by native PAGE and surface plasmon resonance. Mg2+ ions are required to maintain in vivo function of FX Gla domain for its recognition of AHP IX-bp. Both Ca2+ and Zn2+ ions fail to induce the binding between apo-AHP IX-bp and FXa. The abundant Mg2+ ions in blood play an important role in the anticoagulation of AHP IX-bp.
- Published
- 2010
- Full Text
- View/download PDF
32. Small-molecule reductants inhibit multicatalytic activity of AA-NADase fromAgkistrodon acutusvenom by reducing the disulfide-bonds and Cu(II) of enzyme
- Author
-
Xiaolong Xu, Liyun Zhang, Hao Wu, Yangzhong Liu, Dengke Shen, Lili Peng, and Zhaofeng Luo
- Subjects
Tris ,Phosphines ,Biophysics ,Peptide ,Biochemistry ,Dithiothreitol ,Biomaterials ,chemistry.chemical_compound ,NAD+ Nucleosidase ,Crotalid Venoms ,Animals ,Cysteine ,Disulfides ,Polyacrylamide gel electrophoresis ,chemistry.chemical_classification ,biology ,Organic Chemistry ,General Medicine ,Glutathione ,Enzyme assay ,chemistry ,TCEP ,biology.protein ,Oxidation-Reduction ,Copper - Abstract
AA-NADase from Agkistrodon acutus venom is a unique multicatalytic enzyme with both NADase and AT(D)Pase activities. Among all identified NADases, only AA-NADase contains Cu(II) and has disulfide-bond linkages between two peptide chains. The effects of the reduction of the disulfide-bonds and Cu(II) in AA-NADase by small-molecule reductants on its NADase and ADPase activities have been investigated by polyacrylamide gel electrophoresis, high performance liquid chromatography, electron paramagnetic resonance spectroscopy and isothermal titration calorimetry. The results show that AA-NADase has six disulfide-bonds and fifteen free cysteine residues. L-ascorbate inhibits AA-NADase on both NADase and ADPase activities through the reduction of Cu(II) in AA-NADase to Cu(I), while other reductants, dithiothreitol, glutathione and tris(2-carboxyethyl)phosphine inhibit both NADase and ADPase activities through the reduction of Cu(II) to Cu(I) and the cleavage of disulfide-bonds in AA-NADase. Apo-AA-NADase can recover its NADase and ADPase activities in the presence of 1 mM Zn(II). However, apo-AA-NADase does not recover any NADase or ADPase activity in the presence of 1 mM Zn(II) and 2 mM TCEP. The multicatalytic activity relies on both disulfide-bonds and Cu(II), while Cu(I) can not activate the enzyme activities. AA-NADase is probably only active as a dimer. The inhibition curves for both ADPase and NADase activities by each reductant share a similar trend, suggesting both ADPase and NADase activities probably occur at the same site. In addition, we also find that glutathione and L-ascorbate are endogenous inhibitors to the multicatalytic activity of AA-NADase.
- Published
- 2010
- Full Text
- View/download PDF
33. Oxygen-dependent Oxidation of Fe(II) to Fe(III) and Interaction of Fe(III) with Bovine Serum Albumin, Leading to a Hysteretic Effect on the Fluorescence of Bovine Serum Albumin
- Author
-
Hao Wu, Xiaolong Xu, Liyun Zhang, Qingliang Liu, and Dengke Shen
- Subjects
Conformational change ,Circular dichroism ,Sociology and Political Science ,Clinical Biochemistry ,Analytical chemistry ,Serum albumin ,chemistry.chemical_element ,Ferric Compounds ,Biochemistry ,Oxygen ,Fluorescence ,Animals ,Ferrous Compounds ,Bovine serum albumin ,Spectroscopy ,Quenching (fluorescence) ,biology ,Chemistry ,Circular Dichroism ,Tryptophan ,Serum Albumin, Bovine ,Clinical Psychology ,Spectrometry, Fluorescence ,biology.protein ,Cattle ,Titration ,Oxidation-Reduction ,Law ,Social Sciences (miscellaneous) ,Nuclear chemistry - Abstract
The serum albumin is the most abundant protein in blood plasma and the iron is essential for many cellular processes. However, the interaction between Fe(3+) and haem-free serum albumin remains unclear. Here we provide evidence for the fact that haem-free BSA possesses one specific Fe(3+)-binding site. The binding of Fe(3+) to BSA results in a significant quenching of the Trp fluorescence of BSA. The average apparent dissociation constant value for the interaction of Fe(3+) and BSA is 3.46 x 10(-8)+/-3 x 10(-10) M at 37 degrees C and 3.30 x 10(-8)+/-5 x 10(-10) M at 25 degrees C, respectively, as determined by fluorescence titration. Addition of 50 microM Fe(2+) to 1 microM BSA results in an obvious hysteretic effect on the fluorescence of BSA. The time-dependent fluorescence quenching of BSA by Fe(2+) is not caused by the Fe(2+)-induced conformational change of BSA, but the oxygen-dependent oxidation of Fe(2+) to Fe(3+). Fe(2+) undergoes an oxygen-dependent oxidation to Fe(3+) under aerobic conditions, which is accelerated by the interaction of BSA with Fe(3+) and extensively inhibited under anaerobic conditions. The results suggest that BSA may take part in non-transferrin bound iron transfer.
- Published
- 2007
- Full Text
- View/download PDF
34. Nd3+ Sensitized Up/Down Converting Dual-Mode Nanomaterials for Efficient In-vitro and In-vivo Bioimaging Excited at 800 nm
- Author
-
Dengke Shen, Xiaomin Li, Chi Yao, Fan Zhang, Rui Wang, Lei Zhou, and Dongyuan Zhao
- Subjects
Diagnostic Imaging ,Ytterbium ,Materials science ,chemistry.chemical_element ,Gadolinium ,Lanthanoid Series Elements ,Neodymium ,Article ,Fluorescence ,Nanomaterials ,Erbium ,Mice ,Chlorides ,Animals ,Fluorescent Dyes ,Multidisciplinary ,business.industry ,Sodium ,Thulium ,chemistry ,Excited state ,Nanoparticles ,Optoelectronics ,business ,Luminescence - Abstract
Core/shell1/shell2/shell3 structured NaGdF4:Nd/NaYF4/NaGdF4:Nd,Yb,Er/NaYF4 nanocrystals were well designed and synthesized, each of the parts assume respective role and work together to achieve dual-mode upconverting (UC) and downconverting (DC) luminescence upon the low heat effect 800-nm excitation. Nd(3+), Yb(3+), Er(3+) tri-doped NaGdF4:Nd,Yb,Er UC layer [NIR (800 nm)-to-Visible (540 nm)] with a constitutional efficient 800 nm excitable property were achieved for the in-vitro bioimaging with low auto-fluorescence and photo-damage effects. Moreover, typical NIR (800 nm)-to-NIR (860-895 nm) DC luminescence of Nd(3+) has also been realized with this designed nanostructure. Due to the low heat effect, high penetration depth of the excitation and the high efficiency of the DC luminescence, the in-vivo high contrast DC imaging of a whole body nude mouse was achieved. We believe that such dual-mode luminescence NCs will open the door to engineering the excitation and emission wavelengths of NCs and will provide a new tool for a wide variety of applications in the fields of bioanalysis and biomedical.
- Published
- 2013
- Full Text
- View/download PDF
35. Nanoparticles: Germanium Nanograin Decoration on Carbon Shell: Boosting Lithium-Storage Properties of Silicon Nanoparticles (Adv. Funct. Mater. 43/2016)
- Author
-
Jianping Yang, Dengke Shen, Yunxiao Wang, Shi Xue Dou, Renyuan Zhang, Wei Luo, Hua-Kun Liu, and Binwei Zhang
- Subjects
Materials science ,Silicon ,Shell (structure) ,chemistry.chemical_element ,Nanoparticle ,Nanotechnology ,Germanium ,Core shell nanoparticles ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,Biomaterials ,chemistry ,Electrochemistry ,Lithium ,Carbon - Published
- 2016
- Full Text
- View/download PDF
36. One-step hydrothermal synthesis of carboxyl-functionalized upconversion phosphors for bioapplications
- Author
-
Dengke Shen, Yong Wei, Xiaomin Li, Wei Li, Bo Tu, Yin Fang, Fan Zhang, Jianping Yang, Dongyuan Zhao, and Chi Yao
- Subjects
Thermogravimetric analysis ,Oxalic acid ,Inorganic chemistry ,Succinic Acid ,Malonic acid ,Catalysis ,Antibodies ,chemistry.chemical_compound ,Hydrothermal synthesis ,Dicarboxylic Acids ,Particle Size ,Tartrates ,Immunoassay ,Oxalic Acid ,Organic Chemistry ,General Chemistry ,Photon upconversion ,Malonates ,chemistry ,Chemical engineering ,Succinic acid ,Luminescent Measurements ,Tartaric acid ,Nanoparticles ,Metals, Rare Earth ,Luminescence - Abstract
In this paper, we report a facile one-step hydrothermal method to synthesize phase-, size-, and shape-controlled carboxyl-functionalized rare-earth fluorescence upconversion phosphors by using a small-molecule binary acid, such as malonic acid, oxalic acid, succinic acid, or tartaric acid as capping agent. The crystals, from nano- to microstructures with diverse shapes that include nanospheres, microrods, hexagonal prisms, microtubes, microdisks, polygonal columns, and hexagonal tablets, can be obtained with different reaction times, reaction temperatures, molar ratios of capping agent to sodium hydroxide, and by varying the binary acids. Fourier transform infrared, thermogravimetric analysis, and upconversion luminescence spectra measurements indicate that the synthesized NaYF(4):Yb/Er products with hydrophilic carboxyl-functionalized surface offer efficient upconversion luminescent performance. Furthermore, the antibody/secondary antibody conjugation can be realized by the carboxyl-functionalized surfaces of the upconversion phosphors, thus indicating the potential bioapplications of these kinds of materials.
- Published
- 2012
37. Cu(ii)- and disulfide bonds-induced stabilization during the guanidine hydrochloride- and thermal-induced denaturation of NAD-glycohydrolase from the venom of Agkistrodon acutus
- Author
-
Lili Peng, Dengke Shen, Xiaolong Xu, Liyun Zhang, Yan Zhang, Zhaofeng Luo, and Jiajia Song
- Subjects
inorganic chemicals ,Circular dichroism ,Protein Denaturation ,Hydrochloride ,Cations, Divalent ,Phosphines ,Dimer ,Enthalpy ,Biophysics ,Biochemistry ,Biomaterials ,chemistry.chemical_compound ,symbols.namesake ,Differential scanning calorimetry ,NAD+ Nucleosidase ,Crotalid Venoms ,Animals ,Denaturation (biochemistry) ,Disulfides ,Guanidine ,Protein Unfolding ,Calorimetry, Differential Scanning ,Protein Stability ,Circular Dichroism ,Metals and Alloys ,Gibbs free energy ,Crystallography ,Spectrometry, Fluorescence ,chemistry ,Chemistry (miscellaneous) ,biological sciences ,symbols ,Thermodynamics ,Agkistrodon ,Copper - Abstract
NAD-glycohydrolase (AA-NADase) from Agkistrodon acutus venom is a unique multicatalytic enzyme with both NADase and AT(D)Pase-like activities. Among all identified NADases, only AA-NADase is a disulfide-linked dimer and contains Cu(2+). Cu(2+) and disulfide bonds are essential for its multicatalytic activity. In this study, the effects of Cu(2+) and disulfide-bonds on guanidine hydrochloride (GdnHCl)- and thermal-induced unfolding of AA-NADase have been investigated by fluorescence, circular dichroism (CD) and differential scanning calorimetry (DSC). Cu(2+) and disulfide bonds not only increase the free energy change during the GdnHCl-induced unfolding as determined by fluorescence, but also increase the overall enthalpy change and the transition temperature during the thermal-induced unfolding as determined by CD and DSC. The slope of the GdnHCl-induced unfolding curve at its midpoint and the heat capacity of thermal-induced unfolding are slightly affected by Cu(2+) but significantly decrease after reduction of three disulfide-bonds. This work suggests that Cu(2+) stabilizes the folded state by increasing the enthalpy of unfolding, while disulfide-bonds stabilize the folded state by increasing the enthalpy of unfolding and stabilizing the packing of hydrophobic residues. Thus both Cu(2+) and disulfide bonds play a structural role in its multicatalytic activity.
- Published
- 2011
38. Purification and partial characterization of a novel phosphodiesterase from the venom of Trimeresurus stejnegeri: inhibition of platelet aggregation
- Author
-
Xincheng Yan, Xiaolong Xu, Yan Zhang, Jiajia Song, Mingchun Guo, Dengke Shen, and Lili Peng
- Subjects
Nucleotidase activity ,Platelet Aggregation ,Nicotinamide adenine dinucleotide ,Biochemistry ,Serine ,chemistry.chemical_compound ,Nickel ,Crotalid Venoms ,Animals ,Humans ,Trimeresurus ,Polyacrylamide gel electrophoresis ,5'-Nucleotidase ,Isoelectric focusing ,Phosphoric Diester Hydrolases ,Phosphodiesterase ,General Medicine ,Molecular biology ,Molecular Weight ,Kinetics ,Isoelectric point ,chemistry ,Electrophoresis, Polyacrylamide Gel ,sense organs ,NAD+ kinase ,Copper ,Platelet Aggregation Inhibitors - Abstract
The phosphodiesterases (PDEs) are a superfamily of enzymes that have multiple roles in extracellular nucleotide metabolism and in the regulation of nucleotide-based intercellular signaling. Here we describe for the first time the isolation and partial characterization of a novel phosphodiesterase from Trimeresurus stejnegeri venom, named TS-PDE, using ion exchange and gel filtration chromatography. The purified TS-PDE is shown to be homogeneous as judged by SDS-PAGE and capillary isoelectric focusing. TS-PDE is a glycoprotein which contains 2.48% carbohydrate. Unlike other PDEs which are usually single polypeptide chain proteins with isoelectric points between 7.5 and 10.5, TS-PDE is a disulfide-linked heterodimer with an isoelectric point of 5.1 and a molecular mass of 100 kDa. The N-terminal amino acids of two chains are valine and serine, respectively. Furthermore, among all identified PDEs, only TS-PDE contains both of endogenous Cu(2+) and Zn(2+) which are essential for its phosphodiesterase activity. The purified TS-PDE exhibits broad phosphodiesterase substrate range with the order of specificity: nicotinamide guanine dinucleotide > ATP > nicotinamide adenine dinucleotide > ADP. The purified TS-PDE shows an exonuclease activity and no contamination with either alkaline phosphatase or 5'-nucleotidase activity. TS-PDE strongly inhibits ADP-induced platelet aggregation in human platelet-rich plasma by hydrolyzing ADP. Altogether, these results indicate that the novel TS-PDE is a unique phosphodiesterase with different structure from the known PDEs.
- Published
- 2011
39. Metal ion binding to anticoagulation factor II from the venom of Agkistrodon acutus: stabilization of the structure and regulation of the binding affinity to activated coagulation factor X
- Author
-
Xiaolong Xu, Yan Zhang, Dengke Shen, Lili Peng, Hao Wu, Jiajia Song, and Qingde Su
- Subjects
Models, Molecular ,Protein Denaturation ,Hydrochloride ,Protein Conformation ,Analytical chemistry ,Venom ,digestive system ,Biochemistry ,Medicinal chemistry ,Inorganic Chemistry ,Metal ,chemistry.chemical_compound ,Structure-Activity Relationship ,Differential scanning calorimetry ,Metals, Alkaline Earth ,Crotalid Venoms ,Surface plasmon resonance ,Guanidine ,Ions ,Binding Sites ,Venoms ,Isothermal titration calorimetry ,Fluorescence ,digestive system diseases ,chemistry ,visual_art ,Factor X ,visual_art.visual_art_medium ,Thermodynamics - Abstract
Anticoagulation factor II (ACF II) isolated from the venom of Agkistrodon acutus is an activated coagulation factor X (FXa)-binding protein with both anticoagulant and hypotensive activities. The thermodynamics of the binding of alkaline earth metal ions to ACF II and their effects on the stability of ACF II and the binding of ACF II to FXa were investigated by isothermal titration calorimetry, fluorescence, differential scanning calorimetry, and surface plasmon resonance. The binding of ACF II to FXa does not have an absolute requirement for Ca(2+). Mg(2+), Sr(2+), and Ba(2+) can induce the binding of ACF II to FXa. The radii of the cations bound in ACF II crucially affect the binding affinity of ACF II for cations and the structural stability of ACF II against guanidine hydrochloride and thermal denaturation, whereas the radii of cations bound in FXa markedly affect the binding affinity between ACF II and FXa. The binding affinities of ACF II for cations and the capacities of metal-induced stabilization of ACF II follow the same trend: Ca(2+) Sr(2+) Ba(2+). The metal-induced binding affinities of ACF II for FXa follow the trend Mg(2+) Ca(2+) Sr(2+) Ba(2+). Although Mg(2+) shows significantly low binding affinity with ACF II, Mg(2+) is the most effective to induce the binding of ACF II with FXa. Our observations suggest that in blood the bindings of Ca(2+) in two sites of ACF II increase the structural stability of ACF II, but these bindings are not essential for the binding of ACF II with FXa, and that the binding of Mg(2+) and Ca(2+) to FXa may be essential for the recognition between FXa and ACF II. Like Ca(2+), the abundant Mg(2+) in blood also plays an important role in the anticoagulation of ACF II.
- Published
- 2010
40. Binding of Ca2+ and Zn2+ to factor IX/X-binding protein from venom of Agkistrodon halys Pallas: stabilization of the structure during GdnHCl-induced and thermally induced denaturation
- Author
-
Jiajia Song, Hao Wu, Yan Zhang, Dengke Shen, Lili Peng, and Xiaolong Xu
- Subjects
inorganic chemicals ,Protein Denaturation ,Stereochemistry ,Protein Conformation ,Biochemistry ,Inorganic Chemistry ,Factor IX ,chemistry.chemical_compound ,Structure-Activity Relationship ,Crotalid Venoms ,medicine ,Animals ,Denaturation (biochemistry) ,Binding site ,Guanidine ,Binding Sites ,Chemistry ,Protein Stability ,Factor X ,Binding protein ,Temperature ,Isothermal titration calorimetry ,Coagulation Factor IX ,Zinc ,Calcium ,Agkistrodon ,medicine.drug - Abstract
Coagulation factor IX/coagulation factor X binding protein from the venom of Agkistrodon halys Pallas (AHP IX/X-bp) is a unique coagulation factor IX/coagulation factor X binding protein (IX/X-bp). Among all IX/X-bps identified, only AHP IX/X-bp is a Ca(2+)- and Zn(2+)-binding protein. The binding properties of Ca(2+) and Zn(2+) ions binding to apo-AHP IX/X-bp and their effects on the stability of the protein have been investigated by isothermal titration calorimetry, fluorescence spectroscopy, and differential scanning calorimetry. The results show that AHP IX/X-bp has two metal binding sites, one specific for Ca(2+) with lower affinity for Zn(2+) and one specific for Zn(2+) with lower affinity for Ca(2+). The bindings of Ca(2+) and Zn(2+) in the two sites are entropy- and enthalpy-driven. The binding affinity of AHP IX/X-bp for Zn(2+) is 1 order of magnitude higher than for Ca(2+) for either high-affinity binding or low-affinity binding, which accounts for the existence of one Zn(2+) in the purified AHP IX/X-bp. Guanidine hydrochloride (GdnHCl)-induced and thermally induced denaturations of Ca(2+)-Ca(2+)-AHP IX/X-bp, Zn(2+)-Zn(2+)-AHP IX/X-bp, and Ca(2+)-Zn(2+)-AHP IX/X-bp are all a two-state processes with no detectable intermediate state(s), indicating the Ca(2+)/Zn(2+)-induced tight packing of the protein. Ca(2+) and Zn(2+) increase the structural stability of AHP IX/X-bp against GdnHCl or thermal denaturation to a similar extent. Although Ca(2+) and Zn(2+) have no obvious effect on the secondary structure of AHP IX/X-bp, they induce different rearrangements in local conformation. The Zn(2+)-stabilized specific conformation of AHP IX/X-bp may be helpful to its recognition of the structure of coagulation factor IX. This work suggests that in vitro, Ca(2+) plays a structural rather than an active role in the anticoagulation of AHP IX/X-bp, whereas Zn(2+) plays both structural and active roles in the anticoagulation. In blood, Ca(2+) binds to AHP IX/X-bp and stabilizes its structure, whereas Zn(2+) cannot bind to AHP IX/X-bp owing to the low Zn(2+) concentration. AHP IX/X-bp prolongs the clotting time in vivo through its binding only with coagulation factor X/activated coagulation factor X.
- Published
- 2010
41. Identification of a nitric oxide-dependent hypotensive effect of anticoagulation factor II from the venom of Agkistrodon acutus
- Author
-
Xiaolong Xu, Lili Peng, Liyun Zhang, Dengke Shen, and Hao Wu
- Subjects
Male ,Arginine ,Endothelium ,Vasodilation ,Blood Pressure ,Pharmacology ,Nitric Oxide ,digestive system ,Biochemistry ,Nitric oxide ,chemistry.chemical_compound ,In vivo ,Crotalid Venoms ,medicine ,Animals ,Rats, Wistar ,medicine.diagnostic_test ,Dose-Response Relationship, Drug ,Anticoagulants ,Coagulation Factor IX ,digestive system diseases ,Rats ,Dose–response relationship ,medicine.anatomical_structure ,chemistry ,Agkistrodon ,Hypotension ,Partial thromboplastin time - Abstract
Anticoagulation factor II (ACF II) isolated from the venom of Agkistrodon acutus is a member of the coagulation factor IX/coagulation factor X-binding protein (IX/X-bp) family. ACF II forms a 1:1 complex with activated coagulation factor X in a Ca(2+)-dependent fashion and thereby blocks the amplification of the coagulation cascade. In the present study, we have investigated the effect of ACF II on the mean arterial blood pressure (MABP) and heart rate (HR) in anaesthetized rats. The results indicate that ACF II induces a dose-dependent response in rats with a short fast drop of MABP followed by an increase and then a longer lasting slight decrease in MABP, but does not obviously affect HR. ACF II-induced hypotension is significantly blocked by the nitric oxide (NO) synthase inhibitor N-omega-L-arginine methyl ester (L-NAME). ACF II produces a concentration-dependent relaxation of rat aortic rings with functional-endothelium. The ACF II-induced vasodilatation is completely inhibited by removal of endothelium and significantly inhibited by pretreatment with L-NAME. These observations demonstrate that ACF II induces hypotension through an endothelium-dependent vasodilation, which is strongly mediated by the release of NO from endothelium. ACF II exhibits high anticoagulation activity in vivo based on activated partial thromboplastin time assay. Therefore, ACF II is so far identified as the first unique bifunctional protein in the IX/X-bp family that has both anticoagulant and hypotensive effects on the blood of rats through different pathways.
- Published
- 2009
42. Effect of metal ion substitutions in anticoagulation factor I from the venom of Agkistrodon acutus on the binding of activated coagulation factor X and on structural stability
- Author
-
Jiehua Li, Lili Peng, Dengke Shen, Xiaolong Xu, Liyun Zhang, and Hao Wu
- Subjects
Models, Molecular ,Circular dichroism ,Protein Denaturation ,Protein Folding ,digestive system ,Biochemistry ,Ion ,Inorganic Chemistry ,Metal ,chemistry.chemical_compound ,Metals, Alkaline Earth ,Crotalid Venoms ,Animals ,Surface plasmon resonance ,Guanidine ,Ions ,Alkaline earth metal ,Ionic radius ,Chromatography ,Chemistry ,Isothermal titration calorimetry ,digestive system diseases ,Protein Structure, Tertiary ,Crystallography ,visual_art ,Factor Xa ,visual_art.visual_art_medium ,Thermodynamics ,Calcium ,Cattle ,Agkistrodon ,Protein Binding - Abstract
Anticoagulation factor I (ACF I) isolated from the venom of Agkistrodon acutus is an activated coagulation factor X (FXa)-binding protein that binds in a Ca(2+)-dependent fashion with marked anticoagulant activity. The thermodynamics of the binding of alkaline earth metal ions to ACF I and the effects of alkaline earth metal ions on the guanidine hydrochloride (GdnHCl)-induced unfolding of ACF I and the binding of ACF I to FXa were studied by isothermal titration calorimetry, fluorescence, circular dichroism, and surface plasmon resonance, respectively. The results indicate that the ionic radii of the cations occupying Ca(2+)-binding sites in ACF I crucially affect the binding affinity of ACF I for alkaline earth metal ions as well as the structural stability of ACF I against GdnHCl denaturation. Sr(2+) and Ba(2+), with ionic radii larger than the ionic radius of Ca(2+), can bind to Ca(2+)-free ACF I (apo-ACF I), while Mg(2+), with an ionic radius smaller than that of Ca(2+), shows significantly low affinity for the binding to apo-ACF I. All bindings of Ca(2+), Sr(2+), and Ba(2+) ions in two sites of ACF I are mainly enthalpy-driven and the entropy is unfavorable for them. Sr(2+)-stabilized ACF I exhibits slightly lower resistance to GdnHCl denaturation than Ca(2+)-ACF I, while Ba(2+)-stabilized ACF I exhibits much lower resistance to GdnHCl denaturation than Ca(2+)-ACF I. Mg(2+) and Sr(2+), with ionic radii close to that of Ca(2+), can bind to FXa and therefore also induce the binding of ACF I to FXa, whereas Ba(2+), with a much larger ionic radius than Ca(2+), cannot support the binding of ACF I with FXa. Our observations suggest that bindings of Ca(2+), Sr(2+), and Ba(2+) ions in two sites of ACF I increase the structural stability of ACF I, but these bindings are not essential for the binding of ACF I with FXa, and that the binding of Mg(2+), Ca(2+), and Sr(2+) ions to FXa may be essential for the recognition between FXa and ACF I.
- Published
- 2008
43. Identification of an unusual AT(D)Pase-like activity in multifunctional NAD glycohydrolase from the venom of Agkistrodon acutus
- Author
-
Zhaofeng Luo, Dengke Shen, Xiaolong Xu, Liyun Zhang, and Hao Wu
- Subjects
Adenosine monophosphate ,ADP-ribosyl Cyclase ,Stereochemistry ,Biochemistry ,Catalysis ,Substrate Specificity ,chemistry.chemical_compound ,Adenosine Triphosphate ,NAD+ Nucleosidase ,ATP hydrolysis ,Crotalid Venoms ,Animals ,Glycosyl ,Disulfides ,Hydrolysis ,General Medicine ,NAD+ nucleosidase ,NAD ,Adenosine Monophosphate ,Adenosine Diphosphate ,Adenosine diphosphate ,chemistry ,NAD+ kinase ,Agkistrodon ,Adenosine triphosphate ,Copper - Abstract
NAD-glycohydrolases (NADases) are ubiquitous enzymes that possess NAD glycohydrolase, ADPR cyclase or cADPR hydrolase activity. All these activities are attributed to the NADase-catalyzed cleavage of C-N glycosyl bond. AA-NADase purified from the venom of Agkistrodon acutus is different from the known NADases, for it consists of two chains linked with disulfide-bond(s) and contains one Cu(2+) ion. Here, we show that AA-NADase is not only able to cleave the C-N glycosyl bond of NAD to produce ADPR and nicotinamide, but also able to cleave the phosphoanhydride linkages of ATP, ADP and AMP-PNP to yield AMP. AA-NADase selectively cleaves the P-O-P bond of ATP, ADP and AMP-PNP without the cleavage of P-O-P bond of NAD. The hydrolysis reactions of NAD, ATP and ADP catalyzed by AA-NADase are mutually competitive. ATP is the excellent substrate for AA-NADase with the highest specificity constant k(cat)/K(m) of 293+/-7mM(-1)s(-1). AA-NADase catalyzes the hydrolysis of ATP to produce AMP with an intermediate ADP. AA-NADase binds with one AMP with high affinity determined by isothermal titration calorimetry (ITC). AMP is an efficient inhibitor against NAD. AA-NADase has so far been identified as the first unique multicatalytic enzyme with both NADase and AT(D)Pase-like activities.
- Published
- 2008
44. Calcium ion-induced stabilization and refolding of agkisacutacin from Agkistrodon acutus venom studied by fluorescent spectroscopy
- Author
-
Jiexia Chen, Xiaolong Xu, Liyun Zhang, Qingliang Liu, Dengke Shen, and Shou-Ye Wang
- Subjects
Protein Denaturation ,Protein Folding ,Sociology and Political Science ,Cations, Divalent ,Clinical Biochemistry ,chemistry.chemical_element ,Venom ,Calcium ,Biochemistry ,Ion ,Crotalid Venoms ,Intermediate state ,Coagulation (water treatment) ,Animals ,Denaturation (biochemistry) ,Spectroscopy ,Coagulation Factor IX ,Fluorescence ,Clinical Psychology ,Crystallography ,Spectrometry, Fluorescence ,chemistry ,Agkistrodon ,Law ,Social Sciences (miscellaneous) - Abstract
Agkisacutacin isolated from the venom of Agkistrodon acutus is a coagulation factor IX / coagulation factor X-binding protein with marked anticoagulant- and platelet-modulating activities. Ca(2+) ion-induced stabilization and refolding of Agkisacutacin have been studied by following fluorescent measurements. Ca(2+) ions not only increase the structural stability of agkisacutacin against GdnHCl denaturation, but also induce its refolding. The GdnHCl-induced unfolding of the apo-agkisacutacin and the purified agkisacutacin is a single-step process with no detectable intermediate state. Ca(2+) ions play an important role in the stabilization of the structure of agkisacutacin. Ca(2+)-stabilized agkisacutacin exhibits higher resistance to GdnHCl denaturation than the apo-agkisacutacin. It is possible to induce refolding of the unfolded apo-agkisacutacin merely by adding 1 mM Ca(2+) ions without changing the concentration of the denaturant. The kinetic result of Ca(2+)-induced refolding provides evidences for that agkisacutacin consists of at least two refolding phases and the first phase of Ca(2+)-induced refolding should involve the formation of the compact Ca(2+)-binding site regions, and subsequently, the protein undergoes further conformational rearrangements to form the native structure.
- Published
- 2006
45. Controllable fabrication of dendritic mesoporous silica–carbon nanospheres for anthracene removal
- Author
-
Chen Wangyuan, Yong Wei, Jianping Yang, Dengke Shen, Xianqiang Ran, Wei-xian Zhang, Jianwei Fan, Dongyuan Zhao, and Wei Teng
- Subjects
Anthracene ,Fabrication ,Materials science ,Renewable Energy, Sustainability and the Environment ,Carbonization ,Nanotechnology ,General Chemistry ,Mesoporous silica ,Uniform size ,chemistry.chemical_compound ,Pulmonary surfactant ,chemistry ,High surface area ,General Materials Science ,Mesoporous material - Abstract
Dendritic mesoporous silica–carbon nanospheres with a uniform size (∼100 nm), high surface area (646 m2 g−1), large pore volume (1.4 cm3 g−1) and center-radial oriented open mesopore channels (7.3 nm) have been fabricated by combining an oil–water biphase stratification and an in situ carbonization of surfactant template strategy.
- Published
- 2014
- Full Text
- View/download PDF
46. Upconversion: NIR-Triggered Release of Caged Nitric Oxide using Upconverting Nanostructured Materials (Small 24/2012)
- Author
-
Rui Wang, Dengke Shen, Chi Yao, John V. Garcia, Peter C. Ford, Jianping Yang, Xiaoming Li, Galen D. Stucky, Fan Zhang, and Dongyuan Zhao
- Subjects
Materials science ,Nanostructured materials ,Nanotechnology ,General Chemistry ,Photochemistry ,Photon upconversion ,Nanomaterials ,Nitric oxide ,Biomaterials ,chemistry.chemical_compound ,chemistry ,Triggered release ,General Materials Science ,Biotechnology - Published
- 2012
- Full Text
- View/download PDF
47. Metal ions binding to NAD-glycohydrolase from the venom of Agkistrodon acutus: Regulation of multicatalytic activity
- Author
-
Zhaofeng Luo, Dengke Shen, Yan Zhang, Jiajia Song, Lili Peng, Hao Wu, Xiaolong Xu, and Liyun Zhang
- Subjects
inorganic chemicals ,Circular dichroism ,Stereochemistry ,Metal ions in aqueous solution ,Biophysics ,Biochemistry ,Biomaterials ,Metal ,NAD+ Nucleosidase ,Nickel ,Crotalid Venoms ,Animals ,Binding site ,chemistry.chemical_classification ,Manganese ,Binding Sites ,Chemistry ,Activator (genetics) ,Metals and Alloys ,Isothermal titration calorimetry ,Fluorescence ,Enzyme ,Metals ,Chemistry (miscellaneous) ,visual_art ,Biocatalysis ,visual_art.visual_art_medium ,Biological Assay ,Agkistrodon ,Copper - Abstract
AA-NADase from Agkistrodon acutus venom is a unique multicatalytic enzyme with both NADase and AT(D)Pase activities. Among all identified NADases, only AA-NADase contains Cu(2+) ions that are essential for its multicatalytic activity. In this study, the interactions between divalent metal ions and AA-NADase and the effects of metal ions on its structure and activity have been investigated by equilibrium dialysis, isothermal titration calorimetry, fluorescence, circular dichroism, dynamic light scattering and HPLC. The results show that AA-NADase has two classes of Cu(2+) binding sites, one activator site with high affinity and approximately six inhibitor sites with low affinity. Cu(2+) ions function as a switch for its NADase activity. In addition, AA-NADase has one Mn(2+) binding site, one Zn(2+) binding site, one strong and two weak Co(2+) binding sites, and two strong and six weak Ni(2+) binding sites. Metal ion binding affinities follow the trend Cu(2+)Ni(2+)Mn(2+)Co(2+)Zn(2+), which accounts for the existence of one Cu(2+) in the purified AA-NADase. Both NADase and ADPase activities of AA-NADase do not have an absolute requirement for Cu(2+), and all tested metal ions activate its NADase and ADPase activities and the activation capacity follows the trend Zn(2+)Mn(2+)Cu(2+) ~Co(2+)Ni(2+). Metal ions serve as regulators for its multicatalytic activity. Although all tested metal ions have no obvious effects on the global structure of AA-NADase, Cu(2+)- and Zn(2+)-induced conformational changes around some Trp residues have been observed. Interestingly, each tested metal ion has a very similar activation of both NADase and ADPase activities, suggesting that the two different activities probably occur at the same site.
- Published
- 2010
- Full Text
- View/download PDF
48. A precise polyrotaxane synthesizer
- Author
-
Bo Song, J. Fraser Stoddart, R. Dean Astumian, Long Zhang, Dengke Shen, Hongliang Chen, Kang Cai, Weixingyue Li, Minh T. Nguyen, Yi Shi, Qing-Hui Guo, Yunyan Qiu, Chuyang Cheng, Cristian Pezzato, Wenqi Liu, Yuanning Feng, and Xiaopeng Li
- Subjects
chemistry.chemical_classification ,Multidisciplinary ,chemistry ,Molecule ,Nanotechnology ,Polymer ,Polyrotaxane ,Redox ,Molecular machine ,Article ,molecular motors ,driven - Abstract
Ten rings on one axle Rotaxanes consist of molecular rings threaded on a central axle. Most approaches to their synthesis have focused on introducing a single ring per axle. Qiu et al. now report a systematic approach to threading up to 10 adjacent rings consecutively. The axle's end groups were constructed to attract free-floating rings when reduced and then to push those rings toward the center upon oxidation. Products of each successive reduction-oxidation cycle were characterized by nuclear magnetic resonance spectroscopy and mass spectrometry. Science , this issue p. 1247
49. A Molecular Dual Pump
- Author
-
R. Dean Astumian, J. Fraser Stoddart, Yi Shi, Long Zhang, Minh T. Nguyen, Yunyan Qiu, Cristian Pezzato, Fehaid Alsubaie, Qing-Hui Guo, Yuanning Feng, Chuyang Cheng, Kang Cai, Dengke Shen, and Weixingyue Li
- Subjects
business.industry ,Chemistry ,Ratchet ,rotary ,General Chemistry ,DUAL (cognitive architecture) ,010402 general chemistry ,chemistry ,channels ,01 natural sciences ,Biochemistry ,Catalysis ,Molecular machine ,0104 chemical sciences ,Colloid and Surface Chemistry ,transport ,Optoelectronics ,business ,machines ,driven - Abstract
Artificial molecular machines (AMMs) built from mechanically interlocked molecules (MIMs) can use energy ratchets to control the unidirectional motion of their component parts. These energy ratchets are operated by the alteration of kinetic barriers and thermodynamic wells, which are, in turn, determined by the switching on and off of noncovalent interactions. Previously, we have developed artificial molecular pumps (AMPs) capable of pumping rings consecutively onto a collecting chain as part of a molecular dumbbell, leading to the formation of rotaxanes. Here, we report a molecular dual pump (MDP) consisting of two individual AMPs linked in a head-to-tail fashion, wherein a single ring is pumped, in a linear manner, on and off a dumbbell involving a [2]rotaxane intermediate by exploiting the redox properties of the two pumps. This MDP, defined by the finely tuned noncovalent interactions and fueled by either chemicals or electricity, utilizes an energy ratchet mechanism to capture a ring and subsequently release it back into solution. The unidirectional motion and the resulting controlled capture and release of the ring were followed by 1D and 2D H-1 NMR spectroscopy and supported by control experiments. This molecular dual pump may be considered to be a forerunner of AMMs that are capable of pumping rings across a membrane in a way similar to how bacteriorhodopsin transports protons from one side of a membrane to the other under the influence of light. Such extensive multicomponent AMMs can lead potentially to molecular transporting platforms with positional and directional control of cargo uptake and release when, and only when, instructed.
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.