3,131 results on '"Alexander, D. A."'
Search Results
2. Exploring Druggable Binding Sites on the Class A GPCRs Using the Residue Interaction Network and Site Identification by Ligand Competitive Saturation
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Tugce Inan, Merve Yuce, Alexander D. MacKerell, and Ozge Kurkcuoglu
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Chemistry ,QD1-999 - Published
- 2024
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3. The Reusability of AlSi10Mg Powder in Directed Energy Deposition
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Parnian Kiani, Alexander D. Dupuy, Kaka Ma, and Julie M. Schoenung
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AlSi10Mg ,additive manufacturing ,laser-directed energy deposition ,powder recycling ,powder reuse ,laser engineered net shaping ,Chemistry ,QD1-999 - Abstract
The low deposition efficiency in directed energy deposition (DED) has prompted the reuse of powders that do not fuse to the builds to make additive manufacturing more sustainable. It is unknown, however, how the properties of the powder and deposited parts change as powders are continuously reused. In this study, AlSi10Mg was investigated for five deposition cycles in DED. Exposing AlSi10Mg powder to DED conditions changes the morphology, size, and flowability. The mechanical properties of AlSi10Mg DED parts decreased after the feedstock powder was reused one time. Notably, no additional significant changes were observed when the powder was further reused.
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- 2024
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4. Synthesis of a New Series of Chromones Based on Formylthiazoles
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Dmytro O. Tarasenko, Andriy Y. Chumak, Oleksii O. Kolomoitsev, Volodymyr M. Kotliar, and Alexander D. Roshal
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thiazole ,chromone ,heterocycle ,complex formation ,Chemistry ,QD1-999 - Abstract
A preparative approach to thiazole-containing chromone derivatives has been developed by modifying the corresponding aldehydes with their further transformation into propenone derivatives, and finally introducing them into the Algar-Flynn-Oyamada reaction. Several methods for obtaining propenones have been analyzed, and the most effective and practically convenient one has been found. The thiazole-containing analogs of chromones obtained have a great potential as probes for a wide range of studies.
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- 2023
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5. Optimizing Automated Detection of Cross-Recessed Screws in Laptops Using a Neural Network
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Nicholas M. DiFilippo, Musa K. Jouaneh, and Alexander D. Jedson
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screw detection ,YOLO ,robotic disassembly ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
This paper investigates varying the operating conditions of a neural network in a robotic system using a low-cost webcam to achieve optimal settings in order to detect crossed-recess screws on laptops, a necessary step in the realization of automated disassembly systems. A study was performed that varied the lighting conditions, velocity, and number of passes the robot made over the laptop, as well as the network size of a YOLO-v5 neural network. The analysis reveals that specific combinations of operating parameters and neural network configurations can significantly improve detection accuracy. Specifically, the best results for the majority of laptops were obtained when the system ran at medium velocity (10 and 15 mm/s), with a light, and the neural network was run with an extra large network. Additionally, the results show that screw characteristics like the screw hole depth, the presence of a taper in the screw hole, screw hole location, and the color difference between the laptop cover and the screw color impact the system’s overall detection rate, with the most important factor being the depth of the screw.
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- 2024
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6. hERG Blockade Prediction by Combining Site Identification by Ligand Competitive Saturation and Physicochemical Properties
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Himanshu Goel, Wenbo Yu, and Alexander D. MacKerell
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SILCS ,hERG channel ,physicochemical properties ,multiple linear regression ,FragMaps ,Chemistry ,QD1-999 - Abstract
The human ether-a-go-go-related gene (hERG) potassium channel is a well-known contributor to drug-induced cardiotoxicity and therefore is an extremely important target when performing safety assessments of drug candidates. Ligand-based approaches in connection with quantitative structure active relationships (QSAR) analyses have been developed to predict hERG toxicity. The availability of the recent published cryogenic electron microscopy (cryo-EM) structure for the hERG channel opened the prospect of using structure-based simulation and docking approaches for hERG drug liability predictions. In recent times, the idea of combining structure- and ligand-based approaches for modeling hERG drug liability has gained momentum offering improvements in predictability when compared to ligand-based QSAR practices alone. The present article demonstrates uniting the structure-based SILCS (site-identification by ligand competitive saturation) approach in conjunction with physicochemical properties to develop predictive models for hERG blockade. This combination leads to improved model predictability based on Pearson’s R and percent correct (represents rank-ordering of ligands) metric for different validation sets of hERG blockers involving a diverse chemical scaffold and wide range of pIC50 values. The inclusion of the SILCS structure-based approach allows determination of the hERG region to which compounds bind and the contribution of different chemical moieties in the compounds to the blockade, thereby facilitating the rational ligand design to minimize hERG liability.
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- 2022
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7. Spontaneous Synchronization of Two Bistable Pyridine-Furan Nanosprings Connected by an Oligomeric Bridge
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Anastasia A. Markina, Maria A. Frolkina, Alexander D. Muratov, Vladislav S. Petrovskii, Alexander F. Valov, and Vladik A. Avetisov
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nanomechanics ,bistability ,Duffing oscillators ,spontaneous synchronization ,pyridine-furan oligomers ,computer simulations ,Chemistry ,QD1-999 - Abstract
The intensive development of nanodevices acting as two-state systems has motivated the search for nanoscale molecular structures whose long-term conformational dynamics are similar to the dynamics of bistable mechanical systems such as Euler arches and Duffing oscillators. Collective synchrony in bistable dynamics of molecular-sized systems has attracted immense attention as a potential pathway to amplify the output signals of molecular nanodevices. Recently, pyridine-furan oligomers of helical shape that are a few nanometers in size and exhibit bistable dynamics similar to a Duffing oscillator have been identified through molecular dynamics simulations. In this article, we present the case of dynamical synchronization of these bistable systems. We show that two pyridine-furan springs connected by a rigid oligomeric bridge spontaneously synchronize vibrations and stochastic resonance enhances the synchronization effect.
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- 2023
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8. Spontaneous Vibrations and Stochastic Resonance of Short Oligomeric Springs
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Alexey M. Astakhov, Vladislav S. Petrovskii, Maria A. Frolkina, Anastasia A. Markina, Alexander D. Muratov, Alexander F. Valov, and Vladik A. Avetisov
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nanosprings ,non-linear dynamics ,bistability ,spontaneous vibrations ,stochastic resonance ,Duffing oscillators ,Chemistry ,QD1-999 - Abstract
There is growing interest in molecular structures that exhibit dynamics similar to bistable mechanical systems. These structures have the potential to be used as two-state operating units for various functional purposes. Particularly intriguing are the bistable systems that display spontaneous vibrations and stochastic resonance. Previously, via molecular dynamics simulations, it was discovered that short pyridine–furan springs in water, when subjected to stretching with power loads, exhibit the bistable dynamics of a Duffing oscillator. In this study, we extend these simulations to include short pyridine–pyrrole and pyridine–furan springs in a hydrophobic solvent. Our findings demonstrate that these systems also display the bistable dynamics, accompanied by spontaneous vibrations and stochastic resonance activated by thermal noise.
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- 2023
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9. Ne-22 Ion-Beam Radiation Damage to DNA: From Initial Free Radical Formation to Resulting DNA-Base Damage
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Melis Kant, Pawel Jaruga, Erdem Coskun, Samuel Ward, Alexander D. Stark, Thomas Baumann, David Becker, Amitava Adhikary, Michael D. Sevilla, and Miral Dizdaroglu
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Chemistry ,QD1-999 - Published
- 2021
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10. Single-Nanoparticle Orientation Sensing by Deep Learning
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Jingtian Hu, Tingting Liu, Priscilla Choo, Shengjie Wang, Thaddeus Reese, Alexander D. Sample, and Teri W. Odom
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Chemistry ,QD1-999 - Published
- 2020
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11. Open-Circuit Photovoltage Exceeding 950 mV with an 840 mV Average at Sb2S3–Thianthrene+/0 Junctions Enabled by Thioperylene Anhydride Back Contacts
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Curtis W. Doiron, Nicholas A. Fitzpatrick, Clare P. Masucci, Julia L. Martin, Alexander D. Carl, and Ronald L. Grimm
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Chemistry ,QD1-999 - Published
- 2020
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12. Identification and Characterization of a DmoB Flavin Oxidoreductase from a Putative Two-Component DMS C‑Monooxygenase
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D. Scott Hammers, Caroline M. Donaghy, Sarah L. Heiss, Lydia M. Harris, Jackson M. Gordon, John W. Stevens, Lucian P. Murray, Alexander D. Schwab, Brooke C. Hester, and Megen A. Culpepper
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Chemistry ,QD1-999 - Published
- 2020
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13. Homology Modeling of Human Uridine-5′-diphosphate-glucuronosyltransferase 1A6 Reveals Insights into Factors Influencing Substrate and Cosubstrate Binding
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Alexander D. Smith, Brent D. G. Page, Abby C. Collier, and Michael W. H. Coughtrie
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Chemistry ,QD1-999 - Published
- 2020
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14. Modeling the Phase Transition in Hydrophobic Weak Polyelectrolyte Gels under Compression
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Alexander D. Kazakov, Varvara M. Prokacheva, Oleg V. Rud, Lucie Nová, and Filip Uhlík
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polyelectrolyte hydrogels ,simulations ,desalination ,hydrophobic gels ,weak polyelectrolytes ,volume-phase transition ,Science ,Chemistry ,QD1-999 ,Inorganic chemistry ,QD146-197 ,General. Including alchemy ,QD1-65 - Abstract
One of the emerging water desalination techniques relies on the compression of a polyelectrolyte gel. The pressures needed reach tens of bars, which are too high for many applications, damage the gel and prevent its reuse. Here, we study the process by means of coarse-grained simulations of hydrophobic weak polyelectrolyte gels and show that the necessary pressures can be lowered to only a few bars. We show that the dependence of applied pressure on the gel density contains a plateau indicating a phase separation. The phase separation was also confirmed by an analytical mean-field theory. The results of our study show that changes in the pH or salinity can induce the phase transition in the gel. We also found that ionization of the gel enhances its ion capacity, whereas increasing the gel hydrophobicity lowers the pressure required for gel compression. Therefore, combining both strategies enables the optimization of polyelectrolyte gel compression for water desalination purposes.
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- 2023
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15. Synthesis and Characterization of Zinc Oxide Nanoparticles Stabilized with Biopolymers for Application in Wound-Healing Mixed Gels
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Andrey V. Blinov, Maksim D. Kachanov, Alexey A. Gvozdenko, Andrey A. Nagdalian, Anastasiya A. Blinova, Zafar A. Rekhman, Alexey B. Golik, Dmitriy S. Vakalov, David G. Maglakelidze, Anzhela G. Nagapetova, Alexander D. Pokhilko, and Irina V. Burkina
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ZnO ,sol–gel method ,rheological properties ,neural networks ,multifactorial experiment ,Science ,Chemistry ,QD1-999 ,Inorganic chemistry ,QD146-197 ,General. Including alchemy ,QD1-65 - Abstract
A method for the synthesis of ZnO nanoparticles (ZnO NPs) gels was developed. ZnO NPs were obtained through a sol–gel method with zinc acetate usage as a precursor. Optimization of the method of synthesis of ZnO NPs gel has been carried out. It was observed that the most stable ZnO NPs gels are formed at room temperature, pH = 8 and molar concentration of zinc C(Zn2+) = 0.05–0.2 M. It was shown that the addition of polysaccharide significantly affects the rheological properties and microstructure of ZnO NPs gels. We found that the optimal polysaccharide for the synthesis of ZnO NPs gels is hydroxyethyl cellulose. It is shown that the microstructure of a gel of ZnO NPs stabilized with hydroxyethyl cellulose is represented by irregularly shaped particles that are assembled into aggregates, with sizes ranging from 150 to 1400 nm. A significant hysteresis region is observed in a gel of ZnO NPs stabilized with hydroxyethyl cellulose. The process of interaction of ZnO NPs with polysaccharides was investigated. It was shown that the interaction of ZnO NPs with polysaccharides occurs through a charged hydroxyl group. In the experiment, a sample of a gel of ZnO NPs modified with hydroxyethyl cellulose was tested. It was shown that the gel of ZnO NPs modified with hydroxyethyl cellulose has a pronounced regenerative effect on burn wounds, which is significantly higher than that of the control group and the group treated with a gel of ZnO microparticles (MPs) and hydroxyethyl cellulose. It is also shown that the rate of healing of burn wounds in animals treated with gel of ZnO nanoparticles with hydroxyethyl cellulose (group 3) is 16.23% higher than in animals treated with gel of ZnO microparticles with hydroxyethyl cellulose (group 2), and 24.33% higher than in the control group treated with hydroxyethyl cellulose. The average rate of healing of burn wounds for the entire experimental period in experimental animals of group 3 is 1.26 and 1.54 times higher than in animals of group 2 and control group, respectively. An experimental study of a gel of ZnO NPs modified with hydroxyethyl cellulose has shown the effectiveness of its use in modeling the healing of skin wounds through primary tension.
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- 2023
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16. Technological features of the method of liquid-phase epitaxy when growing InP/GaInAsP heterostructures
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Mikhail G. Vasil’ev, Anton M. Vasil’ev, Alexander D. Izotov, Yuriy O. Kostin, and Alexey A. Shelyakin
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heterostructures ,growth defects ,laser diodes ,indium phosphide ,buried heterostructures ,channel in the substrate ,Chemistry ,QD1-999 - Abstract
Semiconductor devices of quantum electronics based on InP/GaInAsP heterostructures require the creation of non-defective chips for emitting devices and photodetectors. The production of such chips is impossible without a thorough technological study of the growth processes of epitaxial structures. One of the important problems in relation to the growth of such structures is the growth defects associated with the process of dissociation of indium phosphide on the surface during their growth. The aim of the work was the investigation of the process and mechanism of destruction (dissociation) of the surface of indium phosphide substrates in the range of growth temperatures of structures, as well as the study of methods and techniques that allow minimize the process of dissociation of surface of indium phosphide. The work provides studies of the growth processes of InP/GaInAsP heterostructures, from the liquid phase, taking into account the degradation processes of the growth surface and the mechanisms for the formation of dissociation defects. The schemes of the dissociation process of the InP on the surface of the substrate and the formation of the defective surface of the substrate were analysed. At the same time, technological methods allowing to minimize the dissociation of the surface compound during the process of liquid-phase epitaxy were shown. The original design of a graphite cassette allowing to minimize the dissociation of the indium phosphide substrate in the process of liquid-phase epitaxy was proposed
- Published
- 2021
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17. Structure and chemical composition of grain boundaries in the magnetic semiconductor GaSb
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Vladimir P. Sanygin, Olga N. Pashkova, and Alexander D. Izotov
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magnetic semiconductors ,gallium antimonide ,crystal lattice defects ,magnetic clusters ,Chemistry ,QD1-999 - Abstract
The structure and chemical composition of grain boundaries in GaSb magnetic semiconductors have been investigated. We determined that quenching of the GaSb melt with 2% Mn results in the formation of a textured polycrystal (111). The grain boundaries of the texture are formed by split 60 degree dislocations with dislocation lines. Microinclusions based on the ferromagnetic compound MnSb are located on the stacking faults of split dislocations. The chemical compositions of microinclusions differ, but their average composition is close to Mn1.1Sb. The synthesized GaSb is a soft ferromagnet with a coercive force of 10 Oe and a magnetic state approaching superparamagnetic
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- 2021
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18. Synthesis of bulk crystals and thin films of the ferromagnetic MnSb
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Muhammadyusuf Jaloliddinzoda, Sergey F. Marenkin, Alexey I. Ril’, Mikhail G. Vasil’ev, Alexander D. Izotov, and Denis E. Korkin
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high-temperature soft ferromagnets ,xrd ,dta ,thin films ,microstructure analysis ,manganese antimonide (mnsb) ,Chemistry ,QD1-999 - Abstract
High-temperature ferromagnets are widely used on a practical level. Based on them, magnetic memory for computers and various types of magnetic field sensors are created. Therefore, bulk ingots and thin-film samples of ferromagnet manganese antimonide (MnSb) with a high Curie point are of great interest, both from the practical and fundamental sides. Manganese antimonide films are obtained in hybrid structures using molecular-beam epitaxy. The thickness of the films does not exceed tens of nanometers. Despite their high sensitivity to magnetic fields, their small thickness prevents them from being used as magnetic field sensors. The aim of this work was to synthesise thick bulk ingots of manganese antimonide crystals and films with a thickness of ~ 400 nm on sitall and silicon substrates. MnSb crystals were synthesised using the vacuum-ampoule method and identified using XRD, DTA, and microstructural analysis. The results of studies of bulk samples indicated the presence of an insignificant amount of antimony in addition to the MnSb phase. According to the DTA thermogram of the MnSb alloy, a small endothermic effect was observed at 572 °C, which corresponds to the melting of the eutectic on the part of antimony in the Mn-Sb system. Such composition, according to previous studies, guaranteed the production of manganese antimonide with the maximum Curie temperature. A study of the magnetic properties showed that the synthesised MnSb crystals were a soft ferromagnet with the Curie point ~ 587 K. Thin MnSb films were obtained by an original method using separate sequential deposition in a high vacuum of the Mn and Sb metals with their subsequent annealing. To optimise the process of obtaining films with stoichiometric composition, the dependences of the thickness of metal films on the parameters of the deposition process were calculated. The temperature range of annealing at which the metals interact with the formation of ferromagnetic MnSb films was established, the films were identified, and their electrical and magnetic properties were measured
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- 2021
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19. Growing epitaxial layers of InP/InGaAsP heterostructures on the profiled InP surfaces by liquid-phase epitaxy
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Mikhail G. Vasil’ev, Anton M. Vasil’ev, Alexander D. Izotov, Yuriy O. Kostin, and Alexey A. Shelyakin
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heterostructures ,laser diodes ,indium phosphide ,buried heterostructures ,channel in the substrate ,Chemistry ,QD1-999 - Abstract
The effect of various planes was studied when growing epitaxial layers by liquid-phase epitaxy (LPE) on the profiled InP substrates. The studies allowed obtaining buried heterostructures in the InP/InGaAsP system and creating highly efficient laser diodes and image sensors. It was found that protruding mesa strips or in-depth mesa strips in the form of channels formed by the {111}А, {111}B, {110}, {112}A, or {221}A family of planes can be obtained with the corresponding selection of an etching agent, strip orientation, and a method of obtaining a masking coating. It was noted that in the case of the polarity of axes being in the direction of , the cut of mesa strips was conducted along the most densely packaged planes. This cut led to the difference in rates of both chemical etching and epitaxial burying of profiled surfaces. The cut was made along the planes at a low dissolution rate {111}A for a sphalerite lattice, to which the studied material, indium phosphide, belongs. Analysis of planes {110} and {Ī10} showed that the location of the most densely packaged planes {111}A and {111}B relative to them is different.
- Published
- 2021
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20. Progress and Achievements in Glycosylation of Flavonoids
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Ruslana S. Khodzhaieva, Eugene S. Gladkov, Alexander Kyrychenko, and Alexander D. Roshal
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glycosidic group ,regioselectivity ,chromone ,glycosylation ,flavonoid ,Chemistry ,QD1-999 - Abstract
In recent years, the chemistry of flavonoid glycosylation has undergone significant developments. This mini-review is devoted to summarizing existing strategies and methods for glycosylation of natural and synthetic flavonoids. Herein we overviewed the reaction conditions of flavonoid glycosylation depending on the position of hydroxyl groups in a parent molecule, the degree of it conjugation with the π-system, the presence of steric factors, the formation of intramolecular hydrogen bonds, etc. Especial attention was given to the choice of the glycosyl donor moiety, which has a significant effect on the yield of the final glycosidated products. Finally, a general strategy for regioselective glycosylation of flavonoids containing several hydroxyl groups is outlined.
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- 2021
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21. Quantum Transport of Dirac Fermions in HgTe Gapless Quantum Wells
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Gennady M. Gusev, Alexander D. Levin, Dmitry A. Kozlov, Ze D. Kvon, and Nikolay N. Mikhailov
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quantum transport ,HgTe quantum well ,Landau levels ,Chemistry ,QD1-999 - Abstract
We study the transport properties of HgTe quantum wells with critical well thickness, where the band gap is closed and the low energy spectrum is described by a single Dirac cone. In this work, we examined both macroscopic and micron-sized (mesoscopic) samples. In micron-sized samples, we observe a magnetic-field-induced quantized resistance (~h/2e) at Landau filling factor ν=0, corresponding to the formation of helical edge states centered at the charge neutrality point (CNP). In macroscopic samples, the resistance near a zero Landau level (LL) reveals strong oscillations, which we attribute to scattering between the edge ν=0 state and bulk ν≠0 hole LL. We provide a model taking an empirical approach to construct a LL diagram based on a reservoir scenario, formed by the heavy holes.
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- 2022
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22. Bacterial Cellulose (BC) and BC Composites: Production and Properties
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Tatiana G. Volova, Svetlana V. Prudnikova, Evgeniy G. Kiselev, Ivan V. Nemtsev, Alexander D. Vasiliev, Andrey P. Kuzmin, and Ekaterina I. Shishatskaya
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bacterial cellulose ,composites ,production ,properties ,Chemistry ,QD1-999 - Abstract
The synthesis of bacterial cellulose (BC) by Komagataeibacter xylinus strain B-12068 was investigated on various C-substrates, under submerged conditions with stirring and in static surface cultures. We implemented the synthesis of BC on glycerol, glucose, beet molasses, sprat oil, and a mixture of glucose with sunflower oil. The most productive process was obtained during the production of inoculum in submerged culture and subsequent growth of large BC films (up to 0.2 m2 and more) in a static surface culture. The highest productivity of the BC synthesis process was obtained with the growth of bacteria on molasses and glycerol, 1.20 and 1.45 g/L per day, respectively. We obtained BC composites with silver nanoparticles (BC/AgNPs) and antibacterial drugs (chlorhexidine, baneocin, cefotaxime, and doripenem), and investigated the structure, physicochemical, and mechanical properties of composites. The disc-diffusion method showed pronounced antibacterial activity of BC composites against E. coli ATCC 25922 and S. aureus ATCC 25923.
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- 2022
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23. Fluorescence Correlation Spectroscopy Reveals Efficient Cytosolic Delivery of Protein Cargo by Cell-Permeant Miniature Proteins
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Rebecca F. Wissner, Angela Steinauer, Susan L. Knox, Alexander D. Thompson, and Alanna Schepartz
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Chemistry ,QD1-999 - Published
- 2018
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24. Effect of Ion Migration-Induced Electrode Degradation on the Operational Stability of Perovskite Solar Cells
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Boris Rivkin, Paul Fassl, Qing Sun, Alexander D. Taylor, Zhuoying Chen, and Yana Vaynzof
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Chemistry ,QD1-999 - Published
- 2018
- Full Text
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25. Thermoelectric Transport in a Three-Dimensional HgTe Topological Insulator
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Gennady M. Gusev, Ze D. Kvon, Alexander D. Levin, and Nikolay N. Mikhailov
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topological insulator ,thermopower ,quantum transport ,HgTe quantum well ,Chemistry ,QD1-999 - Abstract
The thermoelectric response of 80 nm-thick strained HgTe films of a three-dimensional topological insulator (3D TI) has been studied experimentally. An ambipolar thermopower is observed where the Fermi energy moves from conducting to the valence bulk band. The comparison between theory and experiment shows that the thermopower is mostly due to the phonon drag contribution. In the region where the 2D Dirac electrons coexist with bulk hole states, the Seebeck coefficient is modified due to 2D electron–3D hole scattering.
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- 2021
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26. Short Pyridine-Furan Springs Exhibit Bistable Dynamics of Duffing Oscillators
- Author
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Vladik A. Avetisov, Maria A. Frolkina, Anastasia A. Markina, Alexander D. Muratov, and Vladislav S. Petrovskii
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Duffing oscillators ,nanomechanics ,bistability ,spontaneous vibrations ,stochastic resonance ,Chemistry ,QD1-999 - Abstract
The intensive development of nanodevices acting as two-state systems has motivated the search for nanoscale molecular structures whose dynamics are similar to those of bistable mechanical systems, such as Euler arches and Duffing oscillators. Of particular interest are the molecular structures capable of spontaneous vibrations and stochastic resonance. Recently, oligomeric molecules that were a few nanometers in size and exhibited the bistable dynamics of an Euler arch were identified through molecular dynamics simulations of short fragments of thermo-responsive polymers subject to force loading. In this article, we present molecular dynamics simulations of short pyridine-furan springs a few nanometers in size and demonstrate the bistable dynamics of a Duffing oscillator with thermally-activated spontaneous vibrations and stochastic resonance.
- Published
- 2021
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27. Novel Biocompatible with Animal Cells Composite Material Based on Organosilicon Polymers and Fullerenes with Light-Induced Bacteriostatic Properties
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Sergey V. Gudkov, Alexander V. Simakin, Ruslan M. Sarimov, Alexander D. Kurilov, and Denis N. Chausov
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fullerene ,borosiloxane ,bacteriostatic agents ,composite materials ,Chemistry ,QD1-999 - Abstract
A technology for producing a nanocomposite based on the borsiloxane polymer and chemically unmodified fullerenes has been developed. Nanocomposites containing 0.001, 0.01, and 0.1 wt% fullerene molecules have been created. It has been shown that the nanocomposite with any content of fullerene molecules did not lose the main rheological properties of borsiloxane and is capable of structural self-healing. The resulting nanomaterial is capable of generating reactive oxygen species (ROS) such as hydrogen peroxide and hydroxyl radicals in light. The rate of ROS generation increases with an increase in the concentration of fullerene molecules. In the absence of light, the nanocomposite exhibits antioxidant properties. The severity of antioxidant properties is also associated with the concentration of fullerene molecules in the polymer. It has been shown that the nanocomposite upon exposure to visible light leads to the formation of long-lived reactive protein species, and is also the reason for the appearance of such a key biomarker of oxidative stress as 8-oxoguanine in DNA. The intensity of the process increases with an increase in the concentration of fullerene molecules. In the dark, the polymer exhibits weak protective properties. It was found that under the action of light, the nanocomposite exhibits significant bacteriostatic properties, and the severity of these properties depends on the concentration of fullerene molecules. Moreover, it was found that bacterial cells adhere to the surfaces of the nanocomposite, and the nanocomposite can detach bacterial cells not only from the surfaces, but also from wetted substrates. The ability to capture bacterial cells is primarily associated with the properties of the polymer; they are weakly affected by both visible light and fullerene molecules. The nanocomposite is non-toxic to eukaryotic cells, the surface of the nanocomposite is suitable for eukaryotic cells for colonization. Due to the combination of self-healing properties, low cytotoxicity, and the presence of bacteriostatic properties, the nanocomposite can be used as a reusable dry disinfectant, as well as a material used in prosthetics.
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- 2021
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28. Hydrogen–Deuterium Exchange of Lipoxygenase Uncovers a Relationship between Distal, Solvent Exposed Protein Motions and the Thermal Activation Barrier for Catalytic Proton-Coupled Electron Tunneling
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Adam R. Offenbacher, Shenshen Hu, Erin M. Poss, Cody A. M. Carr, Alexander D. Scouras, Daniil M. Prigozhin, Anthony T. Iavarone, Ali Palla, Tom Alber, James S. Fraser, and Judith P. Klinman
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Chemistry ,QD1-999 - Published
- 2017
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29. Progress toward Chemical Accuracy in the Computer Simulation of Condensed Phase Reactions
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Bash, Paul A., Ho, L. Lawrence, MacKerell, Alexander D., Levine, David, and Hallstrom, Philip
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- 1996
30. Long-Term Efficacy of T3 Analogue Triac in Children and Adults With MCT8 Deficiency: A Real-Life Retrospective Cohort Study
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Monique de Waart, Anina Enderli, Ferdy S van Geest, Adri van der Walt, Krishna Chatterjee, Sjoerd A A van den Berg, Laura Paone, Patricia Crock, Anne-Marie van Wermeskerken, Lilla Szeifert, Francesco Porta, D Barca, Carla Moran, Katalin E Müller, Alice Dica, Athanasia Stoupa, Felipe Monti Lora, Dana Craiu, Hans van Toor, Peter Christian, Amnon Zung, Stefan Groeneweg, W. Edward Visser, Ronald van der Wal, Régis Coutant, Luigi Garibaldi, Marco Spada, Joel Vanderniet, Jolanta Wierzba, Tony Huynh, Greta Lyons, Annette Hackenberg, Gerarda Cappuccio, Serap Turan, Michaela Linder-Lucht, Jan Fairchild, Peter J Simm, Yolanda B. de Rijke, Enrico Bertini, Amy Lawson-Yuen, Erica L T van den Akker, Bianka Heinrich, Nicola Brunetti-Pierri, Michel Polak, Cheyenne Dewey, Rachana Dubey, Christina Reinauer, Praveen G. Paul, Belinda George, Doris Brunner, Robin P. Peeters, Paul Dimitri, Marco Cappa, Anna Simon, Federica Zibordi, Tuba Seven Menevse, Jonathan Gallichan, Anna Kłosowska, Rowen Seckold, Iuliu Bacos, Davide Tonduti, Alexander D Chesover, Internal Medicine, Pediatrics, Clinical Chemistry, van Geest, Ferdy S, Groeneweg, Stefan, van den Akker, Erica L T, Bacos, Iuliu, Barca, Diana, van den Berg, Sjoerd A A, Bertini, Enrico, Brunner, Dori, Brunetti-Pierri, Nicola, Cappa, Marco, Cappuccio, Gerarda, Chatterjee, Krishna, Chesover, Alexander D, Christian, Peter, Coutant, Régi, Craiu, Dana, Crock, Patricia, Dewey, Cheyenne, Dica, Alice, Dimitri, Paul, Dubey, Rachana, Enderli, Anina, Fairchild, Jan, Gallichan, Jonathan, Garibaldi, Luigi R, George, Belinda, Hackenberg, Annette, Heinrich, Bianka, Huynh, Tony, Kłosowska, Anna, Lawson-Yuen, Amy, Linder-Lucht, Michaela, Lyons, Greta, Lora, Felipe Monti, Moran, Carla, Müller, Katalin E, Paone, Laura, Paul, Praveen G, Polak, Michel, Porta, Francesco, Reinauer, Christina, de Rijke, Yolanda B, Seckold, Rowen, Menevşe, Tuba Seven, Simm, Peter, Simon, Anna, Spada, Marco, Stoupa, Athanasia, Szeifert, Lilla, Tonduti, Davide, van Toor, Han, Turan, Serap, Vanderniet, Joel, de Waart, Monique, van der Wal, Ronald, van der Walt, Adri, van Wermeskerken, Anne-Marie, Wierzba, Jolanta, Zibordi, Federica, Zung, Amnon, Peeters, Robin P, and Visser, W Edward
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Male ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Biochemistry ,chemistry.chemical_compound ,Endocrinology ,Clinical endpoint ,MCT8 Deficiency ,Child ,Symporters ,Thyroid ,Middle Aged ,Muscular Atrophy ,Treatment Outcome ,medicine.anatomical_structure ,Child, Preschool ,Muscle Hypotonia ,Triiodothyronine ,Female ,Adult ,Monocarboxylic Acid Transporters ,medicine.medical_specialty ,Adolescent ,Context (language use) ,AHDS ,Young Adult ,SDG 3 - Good Health and Well-being ,Internal medicine ,Heart rate ,medicine ,Humans ,Allan-Herndon-Dudley syndrome ,Aged ,Retrospective Studies ,Creatinine ,Allan–Herndon–Dudley syndrome ,T3 analogue ,business.industry ,Biochemistry (medical) ,Infant ,Retrospective cohort study ,medicine.disease ,chemistry ,Mutation ,Mental Retardation, X-Linked ,business ,thyromimetic drug ,Follow-Up Studies ,Hormone - Abstract
Context Patients with mutations in thyroid hormone transporter MCT8 have developmental delay and chronic thyrotoxicosis associated with being underweight and having cardiovascular dysfunction. Objective Our previous trial showed improvement of key clinical and biochemical features during 1-year treatment with the T3 analogue Triac, but long-term follow-up data are needed. Methods In this real-life retrospective cohort study, we investigated the efficacy of Triac in MCT8-deficient patients in 33 sites. The primary endpoint was change in serum T3 concentrations from baseline to last available measurement. Secondary endpoints were changes in other thyroid parameters, anthropometric parameters, heart rate, and biochemical markers of thyroid hormone action. Results From October 15, 2014 to January 1, 2021, 67 patients (median baseline age 4.6 years; range, 0.5-66) were treated up to 6 years (median 2.2 years; range, 0.2-6.2). Mean T3 concentrations decreased from 4.58 (SD 1.11) to 1.66 (0.69) nmol/L (mean decrease 2.92 nmol/L; 95% CI, 2.61-3.23; P < 0.0001; target 1.4-2.5 nmol/L). Body-weight-for-age exceeded that of untreated historical controls (mean difference 0.72 SD; 95% CI, 0.36-1.09; P = 0.0002). Heart-rate-for-age decreased (mean difference 0.64 SD; 95% CI, 0.29-0.98; P = 0.0005). SHBG concentrations decreased from 245 (99) to 209 (92) nmol/L (mean decrease 36 nmol/L; 95% CI, 16-57; P = 0.0008). Mean creatinine concentrations increased from 32 (11) to 39 (13) µmol/L (mean increase 7 µmol/L; 95% CI, 6-9; P < 0.0001). Mean creatine kinase concentrations did not significantly change. No drug-related severe adverse events were reported. Conclusions Key features were sustainably alleviated in patients with MCT8 deficiency across all ages, highlighting the real-life potential of Triac for MCT8 deficiency.
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- 2021
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31. Local and Systemic In Vivo Responses to Osseointegrative Titanium Nanotube Surfaces
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Erin A. Baker, Mackenzie M. Fleischer, Alexander D. Vara, Meagan R. Salisbury, Kevin C. Baker, Paul T. Fortin, and Craig R. Friedrich
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orthopedic ,nanomedicine ,nanomodified surfaces ,animal model ,immune response ,Chemistry ,QD1-999 - Abstract
Orthopedic implants requiring osseointegration are often surface modified; however, implants may shed these coatings and generate wear debris leading to complications. Titanium nanotubes (TiNT), a new surface treatment, may promote osseointegration. In this study, in vitro (rat marrow-derived bone marrow cell attachment and morphology) and in vivo (rat model of intramedullary fixation) experiments characterized local and systemic responses of two TiNT surface morphologies, aligned and trabecular, via animal and remote organ weight, metal ion, hematologic, and nondecalcified histologic analyses. In vitro experiments showed total adherent cells on trabecular and aligned TiNT surfaces were greater than control at 30 min and 4 h, and cells were smaller in diameter and more eccentric. Control animals gained more weight, on average; however, no animals met the institutional trigger for weight loss. No hematologic parameters (complete blood count with differential) were significantly different for TiNT groups vs. control. Inductively coupled plasma mass spectrometry (ICP-MS) showed greater aluminum levels in the lungs of the trabecular TiNT group than in those of the controls. Histologic analysis demonstrated no inflammatory infiltrate, cytotoxic, or necrotic conditions in proximity of K-wires. There were significantly fewer eosinophils/basophils and neutrophils in the distal region of trabecular TiNT-implanted femora; and, in the midshaft of aligned TiNT-implanted femora, there were significantly fewer foreign body giant/multinucleated cells and neutrophils, indicating a decreased immune response in aligned TiNT-implanted femora compared to controls.
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- 2021
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32. Characterization of Mg2+ Distributions around RNA in Solution
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Justin A. Lemkul, Sirish Kaushik Lakkaraju, and Alexander D. MacKerell
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Chemistry ,QD1-999 - Published
- 2016
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33. Application of site-identification by ligand competitive saturation in computer-aided drug design
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Wenbo Yu, Alexander D. MacKerell, Himanshu Goel, Sunhwan Jo, and Anthony Hazel
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Chemistry ,Drug discovery ,Allosteric regulation ,Context (language use) ,General Chemistry ,Computational biology ,Ligand (biochemistry) ,computer.software_genre ,Article ,Catalysis ,Identification (information) ,Materials Chemistry ,Computer-aided ,Computer Aided Design ,Pharmacophore ,computer - Abstract
Site Identification by Ligand Competitive Saturation (SILCS) is a molecular simulation approach that uses diverse small solutes in aqueous solution to obtain functional group affinity patterns of a protein or other macromolecule. This involves employing a combined Grand Canonical Monte Carlo (GCMC)-molecular dynamics (MD) method to sample the full 3D space of the protein, including deep binding pockets and interior cavities from which functional group free energy maps (FragMaps) are obtained. The information content in the maps, which include contributions from protein flexibilty and both protein and functional group desolvation contributions, can be used in many aspects of the drug discovery process. These include identification of novel ligand binding pockets, including allosteric sites, pharmacophore modeling, prediction of relative protein-ligand binding affinities for database screening and lead optimization efforts, evaluation of protein-protein interactions as well as in the formulation of biologics-based drugs including monoclonal antibodies. The present article summarizes the various tools developed in the context of the SILCS methodology and their utility in computer-aided drug design (CADD) applications, showing how the SILCS toolset can improve the drug-development process on a number of fronts with respect to both accuracy and throughput representing a new avenue of CADD applications.
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- 2022
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34. All-carbon phosphoranes via difluorocarbene trapping
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Alexander A. Korlyukov, Vladimir O. Smirnov, Alexander D. Volodin, and Alexander D. Dilman
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Difluorocarbene ,Chemistry ,Metals and Alloys ,chemistry.chemical_element ,General Chemistry ,Trapping ,Photochemistry ,Phosphorane ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry.chemical_compound ,Materials Chemistry ,Ceramics and Composites ,Phosphonium ,Carbon - Abstract
A reaction of intramolecularly disposed phosphonium and phenoxide (or thiophenoxide) fragments with difluorocarbene affording all-carbon λ5-phosphoranes is described. The presence of electron-withdrawing CHF2-groups at the phosphonium center is important for the phosphorane formation. In a phosphorane, both phenyl groups located in the equatorial positions undergo 1,2-P,C migration under thermal conditions.
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- 2021
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35. Biocompatibility and electron microscopy studies of epitaxial nanolaminate (Al0·5Ti0.5)N/ZrN coatings deposited by Arc-PVD technique
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Maksym Pogorielov, V. M. Beresnev, Emerson Coy, Karol Załęski, A.V. Pshyk, Yaroslav O. Kravchenko, Alexander D. Pogrebnjak, Igor Iatsunskyi, and Viktoriia Korniienko
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Materials science ,Biocompatibility ,Process Chemistry and Technology ,Nucleation ,chemistry.chemical_element ,Crystal structure ,engineering.material ,Epitaxy ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Coating ,chemistry ,Materials Chemistry ,Ceramics and Composites ,engineering ,Texture (crystalline) ,Composite material ,Tin ,Solid solution - Abstract
The ability to combine layers with high mechanical strength and additional physicochemical properties, such as biocompatibility, makes the use of multilayer coatings attractive for various applications. The transition from single layer to nanolaminate architecture can improve the mechanical performance of the coatings by increasing the number of interfaces and decreasing the modulation period of the layers. The microstructural study of the nanolaminate (Al0·5Ti0.5)N/ZrN coating with a modulation period λ of ≃ 20 nm was carried out using the TEM-HRTEM method. It was found that the coatings of (Al0·5Ti0.5)N/ZrN series consisted of two phases: the fcc-(Ti,Al)N solid solution obtained by isomorphic substitution of Ti atoms with Al ones in the TiN crystal lattice and the cubic ZrN phase. ZrN layers had a high texture structure with [111]-preferred growth texture and made a dominant effect on the nucleation and growth of (Al0·5Ti0.5)N layers. The epitaxial growth process was the most pronounced for fcc-(Ti,Al)N (111)||fcc-(ZrN) (111) and fcc-(Ti,Al)N (200)||fcc-(ZrN) (200) grains. Finally, the new coating demonstrated high biocompatibility, failure to toxicity and supported U2OS osteogenic cells proliferation within 7 days of cultivation.
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- 2021
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36. Ionic Cyclopropenium-Derived Triplatinum Cluster Complex [(Ph3C3)2Pt3(MeCN)4]2+(BF4–)2: Synthesis, Structure, and Perspectives for Use as a Catalyst for Hydrosilylation Reactions
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Ashot V. Arzumanyan, Dmitry N. Kholodkov, Pavel V. Dorovatovskii, Dmitry N. Platonov, Maria A. Belaya, Irina K. Goncharova, Yury V. Tomilov, Yaroslav V. Tkachev, Alexander D. Volodin, Roman A. Novikov, and Alexander A. Korlyukov
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Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Hydrosilylation ,Organic Chemistry ,Polymer chemistry ,Cluster (physics) ,Ionic bonding ,Physical and Theoretical Chemistry ,Catalysis - Abstract
This study presents a methodology for the synthesis of the ionic cyclopropenium-derived triplatinum cluster complex [(Ph3C3)2Pt3(MeCN)4]2+(BF4–)2 and its analogue with the replacement of one of the...
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- 2021
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37. CARBON CHARGE IN THE ENVIRONMENTAL CUSTOMS PAYMENT SYSTEM: INNOVATION OF THE ECONOMIC ENVIRONMENTAL PROTECTION MECHANISM
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Nina A. Ronzhina and Alexander D. Gorokhov
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chemistry ,business.industry ,chemistry.chemical_element ,Payment system ,Charge (physics) ,Business ,Environmental economics ,Carbon ,Mechanism (sociology) - Abstract
The article discusses topical innovations in the development of the current economic mechanism for environmental protection. The issues of introducing into the system of environmental customs fees of carbon payments to import «climate unfavorable» goods, its environmental efficiency is analyzed, as well as economic consequences from the inclusion of payment into the system of customs fees of the European Region. In the specified context, the authors consider problems and prospects for the implementation of such environmental payments into the system of national law of the Russian Federation.
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- 2021
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38. Boron Chelates Derived from N-Acylhydrazones as Radical Acceptors: Photocatalyzed Coupling of Hydrazones with Carboxylic Acids
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Alexander D. Dilman, Vitalij V. Levin, and Igor A. Dmitriev
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inorganic chemicals ,Allylic rearrangement ,Organic Chemistry ,chemistry.chemical_element ,Ring (chemistry) ,Biochemistry ,Silane ,chemistry.chemical_compound ,chemistry ,Polymer chemistry ,Photocatalysis ,Chelation ,Brief treatment ,Physical and Theoretical Chemistry ,Boron ,Boron trifluoride - Abstract
Difluoroboryl complexes obtained from N-acyl hydrazones upon brief treatment with boron trifluoride and allylic silane serve as efficient acceptors of alkyl radicals. The reaction of the boryl chelates with carboxylic acids in the presence of an acridine-type photocatalyst leading to N-acyl hydrazides is described. The efficiency of addition at the C═N bond of the chelates is determined by the formation of a nitrogen-centered radical stabilized by the boron-containing heterocyclic ring.
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- 2021
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39. Photocatalytic Atom‐Transfer Radical Addition of Activated Chlorides to Alkenes
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Vitalij V. Levin, Vladislav S. Kostromitin, Alexander D. Dilman, and Artem A. Zemtsov
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Chemistry ,Atom-transfer radical-polymerization ,Radical ,Photocatalysis ,General Chemistry ,Photochemistry - Published
- 2021
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40. НОВЫЕ ДАННЫЕ КОМПЛЕКСНОГО ИССЛЕДОВАНИЯ ГЕОМЕХАНИЧЕСКИХ И ПЕТРОФИЗИЧЕСКИХ СВОЙСТВ ПОРОД-КОЛЛЕКТОРОВ ДОЛГИНСКОГО МЕСТОРОЖДЕНИЯ ПЕЧОРСКОГО МОРЯ
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Sergey O. Borozdin and Alexander D. Dzublo
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Dolginskoe field ,геомеханика ,Materials Science (miscellaneous) ,Management, Monitoring, Policy and Law ,petrophysics ,Well drilling ,Долгинское месторождение ,chemistry.chemical_compound ,Drilling fluid ,деформации ,проницаемость ,Petrology ,Porosity ,Waste Management and Disposal ,geography ,geography.geographical_feature_category ,geomechanics ,петрофизика ,Petrophysics ,петрофизические свойства ,Drilling ,порометрия ,porosimetry ,triaxial loading ,Geotechnical Engineering and Engineering Geology ,carbonate reservoirs ,nuclear magnetic resonance ,Permeability (earth sciences) ,Fuel Technology ,chemistry ,карбонатные коллекторы ,Carbonate ,Economic Geology ,породы-коллекторы ,напряженные состояния ,permeability ,ядерный магнитный резонанс ,Geology ,Water well - Abstract
Актуальность исследования обусловлена необходимостью сокращения времени строительства скважин на арктическом шельфе ввиду ограниченного по времени сезона навигации и повышения точности при оценке запасов, получаемых по результатам испытания разведочных скважин Долгинского месторождения. Результаты исследования позволяют выбрать оптимальную технологию вскрытия карбонатных пластов-коллекторов Долгинского месторождения, дают возможность обеспечить устойчивость стенок скважины и сохранение коллекторских свойств, установить взаимосвязи коллекторских свойств пород и напряжений в продуктивных пластах, а также обосновать технологические параметры разработки месторождения. Цель: оценка влияния состава, структуры, фильтрационно-емкостных свойств пород-коллекторов и действующих напряжений на их проницаемость. Объекты: карбонатные породы-коллекторы нижнепермского и каменноугольного возраста вскрыты скважиной с глубины 2982 м до забоя 3175 м и характеризуются по керну известняками пелитоморфными, органогенно-обломочными и скрытокристаллическими разностями. Методы. Исследования проведены современными лабораторными методами, включая ртутную порометрию, метод ядерномагнитного резонанса, а также уникальный испытательный стенд Института проблем механики РАН. Результаты. На основе количественных данных литолого-петрофизических свойств изучены деформационно-прочностные характеристики пород из вероятно продуктивной части разреза скважины Северо-Долгинская № 1, которая в силу короткого сезона работ в море не испытывалась. Получены данные о структуре порового пространства, акустических свойствах, плотности, пористости и проницаемости (в том числе в пластовых условиях), остаточной водонасыщенности и т. д. Были изучены деформации образцов пород карбонатной залежи по трем направлениям и связь их с проницаемостью в условиях напряженного состояния. Полученные в результате работы новые сведения позволяют более точно подбирать свойства и компонентный состав бурового раствора с целью контроля репрессии, формирования тонкой непроницаемой фильтрационной корки и минимизации физико-химических взаимодействий между фильтратом бурового раствора и пластовыми флюидами. The relevance of the research is caused by the need to reduce well drilling time on the Arctic shelf due to the limited navigation season and increased accuracy in assessing reserves obtained from the results of testing exploratory wells at the Dolginskoe field. The research results make it possible to select the optimal technology for drilling carbonate reservoirs of the Dolginskoe field, as well as to ensure the stability of the wellbore and preserve reservoir properties, establish the relationship between reservoir properties of rocks and stresses in productive formations, and justify the technological parameters of field development. The purpose of the research is to assess the influence of the composition, structure, filtration-capacitive properties of reservoir rocks and acting stresses on their permeability. Objects. Carbonate reservoir rocks of the Lower Permian and Carboniferous age were drilled in a well from a depth of 2982 m to a bottomhole of 3175 m and are characterized by pelitomorphic limestones, organogenic-detrital and cryptocrystalline varieties. Methods. The research was carried out by modern laboratory methods, including mercury porosimetry, the method of nuclear magnetic resonance, as well as a unique test bench of the Institute for Problems in Mechanics of the Russian Academy of Sciences. Results. On the basis of quantitative data of lithological and petrophysical properties, the authors have studied the deformation and strength characteristics of rocks from the probably productive part of the section of the Severo-Dolginskaya no. 1 well, which was not tested due to the short season of offshore operations. The data were obtained on the structure of the pore space, acoustic properties, density, porosity and permeability (including in reservoir conditions), residual water saturation, etc. The deformations of samples of rocks of a carbonate deposit in three directions and their relationship with permeability under stress conditions were studied. The new information obtained as a result of the work makes it possible to more accurately select the properties and component composition of the drilling fluid in order to control the repression, the formation of a thin impermeable filter cake, and to minimize the physicochemical interactions between the mud filtrate and formation fluids.
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- 2021
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41. Trapping of Difluorocarbene by Frustrated Lewis Pairs
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Alexander D. Dilman, Vladimir O. Smirnov, Alexander A. Korlyukov, and Alexander D. Volodin
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Difluorocarbene ,010405 organic chemistry ,Chemistry ,fungi ,food and beverages ,General Chemistry ,Trapping ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Catalysis ,Frustrated Lewis pair ,0104 chemical sciences ,Adduct ,chemistry.chemical_compound - Abstract
Frustrated Lewis pairs consisting of diphenylphosphino and boryl groups located at the ortho-position can trap difluorocarbene affording stable zwitterionic adducts. The reaction can be reversed to release difluorocarbene at elevated temperatures.
- Published
- 2020
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42. Simultaneous Determination of Hydrazine, Methylhydrazine and 1,1-Dimethylhydrazine in Waters by HPLC with Spectrophotometric Detection Using Catalysis to Obtain Derivatives
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A. V. Apenkina, Alexander D. Smolenkov, Oleg A. Shpigun, Yu. V. Timchenko, and A. V. Pirogov
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Detection limit ,chemistry.chemical_compound ,Methylhydrazine ,Chromatography ,chemistry ,Reagent ,Ion chromatography ,Hydrazine ,Sodium dodecyl sulfate ,Derivatization ,High-performance liquid chromatography ,Analytical Chemistry - Abstract
A simple, rapid, and sensitive method is developed for the simultaneous determination of hydrazine, methylhydrazine, and 1,1-dimethylhydrazine in waters based on precolumn derivatization with benzaldehyde and the determination of the resulting products by reversed-phase HPLC with spectrophotometric detection at 300, 282, and 298 nm, respectively. The effect of imine and micellar catalysis is applied for the first time to obtain hydrazine derivatives on their simultaneous presence. The conditions of derivatization are chosen: the type, pH and concentration of the buffer system; the concentration of the reagent and the surfactant; and the temperature and duration of the reaction. It is found that the derivatization reaction proceeds completely at pH 9.4 in the presence of a catalytic system based on 0.6 M ammonium and 87 mM sodium dodecyl sulfate, and also 3.5 mM reagent at room temperature for 5 min. The quantitative yield of the derivatization products is confirmed by ion chromatography. The limits of detection (S/N = 3) without additional preconcentration are 0.3, 2.3, and 1.3 μg/L, and the linearity range is 1–500, 7–1000, and 5–1000 μg/L for hydrazine, methylhydrazine, and 1,1-dimethylhydrazine, respectively.
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- 2021
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43. A role for translational regulation by S6 kinase and a downstream target in inflammatory pain
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Rebecca Chase, Alexander D. Stanowick, June Bryan de la Peña, Tzu-Fang Lou, Zachary T. Campbell, Nikesh Kunder, Joseph J. Pancrazio, and Paulino Barragán-Iglesias
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Male ,Pharmacology ,Kinase ,Chemistry ,Ribosomal Protein S6 Kinases ,Nociceptors ,Pain ,P70-S6 Kinase 1 ,Ribosomal Protein S6 Kinases, 90-kDa ,Article ,Cell biology ,Mice ,medicine.anatomical_structure ,Nerve growth factor ,Dorsal root ganglion ,Hyperalgesia ,Ganglia, Spinal ,Ribosomal protein s6 ,Translational regulation ,medicine ,Nociceptor ,Animals ,PI3K/AKT/mTOR pathway - Abstract
Background and purpose Translational controls pervade neurobiology. Nociceptors play an integral role in the detection and propagation of pain signals. Nociceptors can undergo persistent changes in their intrinsic excitability. Pharmacological disruption of nascent protein synthesis diminishes acute and chronic forms of pain-associated behaviours. However, the targets of translational controls that facilitate plasticity in nociceptors are unclear. Experimental approach We used ribosome profiling to probe the translational landscape in dorsal root ganglion (DRG) neurons from male Swiss-Webster mice, after treatment with nerve growth factor and IL-6. Expression dynamics of c-Fos were followed with immunoblotting and immunohistochemistry. The involvement of ribosomal protein S6 kinase 1 (S6K1), a downstream component of mTOR signalling, in the control of c-Fos levels was assessed with low MW inhibitors of S6K1 (DG2) or c-Fos (T-5224), studying their effects on nociceptor activity in vitro using multielectrode arrays (MEAs) and pain behaviour in vivo in Swiss-Webster mice using the hyperalgesic priming model. Key results c-Fos was expressed in sensory neurons. Inflammatory mediators that promote pain in both humans and rodents promote c-Fos translation. The mTOR effector S6K1 is essential for c-Fos biosynthesis. Inhibition of S6K1 or c-Fos with low MW compounds diminished mechanical and thermal hypersensitivity in response to inflammatory cues. Additionally, both inhibitors reduced evoked nociceptor activity. Conclusion and implications Our data show a novel role of S6K1 in modulating the rapid response to inflammatory mediators, with c-Fos being one key downstream target. Targeting the S6 kinase pathway or c-Fos is an exciting new avenue for pain-modulating compounds.
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- 2021
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44. Total Synthesis of Tetrahydrolipstatin, Its Derivatives, and Evaluation of Their Ability to Potentiate Multiple Antibiotic Classes against Mycobacterium Species
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Thanuja D. Sudasinghe, Steven J. Sucheck, D.R. Ronning, Alexander D. Landgraf, and Saniya S. Khan
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Orlistat ,biology ,medicine.drug_class ,Chemistry ,Stereochemistry ,Antibiotics ,Isoniazid ,Antitubercular Agents ,Total synthesis ,Rifamycin ,Microbial Sensitivity Tests ,Mycobacterium tuberculosis ,biology.organism_classification ,Article ,chemistry.chemical_compound ,Infectious Diseases ,Biosynthesis ,Synergy ,medicine ,Animals ,Potency ,medicine.drug - Abstract
Tetrahydrolipstatin (THL, 1a) has been shown to inhibit both mammalian and bacterial α/β hydrolases. In the case of bacterial systems, THL is a known inhibitor of several Mycobacterium tuberculosis hydrolases involved in mycomembrane biosynthesis. Herein we report a highly efficient eight-step asymmetric synthesis of THL using a route that allowed modification of the THL α-chain substituent to afford compounds 1a through 1e. The key transformation in the synthesis was use of a (TPP)CrCl/Co(2)(CO)(8) -catalyzed regioselective and stereospecific carbonylation on an advanced epoxide intermediate to yield a trans-β-lactone. These compounds are modest inhibitors of Ag85A and Ag85C, two α/β hydrolases of M. tuberculosis involved in the biosynthesis of the mycomembrane. Among these compounds, 10d showed the highest inhibitory effect on Ag85A (34 ± 22 μM) and Ag85C (66 ± 8 μM) and its X-ray structure was solved in complex with Ag85C to 2.5 Å resolution. In contrast, compound 1e exhibited the best-in-class MICs of 50 μM (25 μg/mL) and 16 μM (8.4 μg/mL) against M. smegmatis and M. tuberculosis H37Ra, respectively, using a microtiter assay plate. Combining 1e with 13 well-established antibiotics synergistically enhanced the potency of few of these antibiotics in M. smegmatis and M. tuberculosis H37Ra. Compound 1e applied at concentrations 4-fold lower than its MIC enhanced the MIC of the synergistic antibiotic by 2 to 256-fold. In addition to observing synergy with first-line drugs, rifamycin and Isoniazid, the MIC of vancomycin against M. tuberculosis H37Ra is 65 μg/mL; however, the MIC was lowered to 0.25 μg/mL in the presence of 2.1 μg/mL 1e demonstrating the potential of targeting mycobacterial hydrolases involved in mycomembrane and peptidoglycan biosynthesis.
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- 2021
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45. Histone Deacetylases in the Process of Halisarca dujardini Cell Reaggregation
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D. V. Zayts, N. G. Gornostaev, A. V. Burakov, Oleg Gusev, Kirill V. Mikhailov, Oksana I. Kravchuk, Victor S. Mikhailov, Alexander D. Finoshin, G. R. Gazizova, G. A. Rubinovsky, Y. E. Yeryukova, Elena Shagimardanova, Anton A. Georgiev, Kim I. Adameyko, and Yulia V. Lyupina
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Regulation of gene expression ,biology ,Chemistry ,Transdifferentiation ,Sodium butyrate ,biology.organism_classification ,Amphimedon queenslandica ,Cell biology ,chemistry.chemical_compound ,Histone ,Acetylation ,Cell Transdifferentiation ,biology.protein ,Epigenetics ,Developmental Biology - Abstract
One of the most common epigenetic modifications of proteins in eukaryotes is the acetylation/deacetylation of lysine. Histone deacetylases (HDACs) reduce the level of histone acetylation, which leads to the suppression of transcription. The participation of histone deacetylases in the regulation of cell proliferation and differentiation, embryonic development, and the occurrence and progression of malignant tumors is well documented for vertebrates. Mechanisms of gene expression regulation associated with the activity of histone diacetylases have not been studied in basal forms of multicellular animals. However, it is known that the process of reaggregations of sponge cells is accompanied by their dedifferentiation and transdifferentiation; it can indicate the involvement of diacetylases in the regulation of this process. The aim of the work was to study the expression of histone deacetylases in the sponge Halisarca dujardini (Demospongiae). Based on the analysis of the transcriptomes of the H. dujardini sponge and the genome of the Amphimedon queenslandica (Demospongia) sponge, representatives of all classes of Zn2+-dependent HDACs in sponges were identified. The differential expression of HDAC was analyzed in a suspension of H. dujardini sponge cells after dissociation of its body and in aggregates after 24 h of reaggregation. The dose-dependent effect of two selective HDAC class I inhibitors (sodium butyrate and valproic acid) on the process of cell reaggregation was studied. It is shown that the addition of selective HDAC class I inhibitors to the incubation medium during aggregation leads to a change in the morphological characteristics of cell aggregates. It can be assumed that the participation of histone deacetylases in the regulation of cell transdifferentiation is an evolutionarily ancient mechanism used by multicellular animals even before the formation of tissue organization.
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- 2021
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46. Transformative Catalysis Purifies Municipal Wastewater of Micropollutants
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Terrence J. Collins, Minkyu Park, Genoa R. Warner, Kevin D. Daniels, Alexander D. Ryabov, Shane A. Snyder, and Yogesh Somasundar
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Transformative learning ,Waste management ,Wastewater ,Chemistry (miscellaneous) ,Chemistry ,Environmental Chemistry ,Chemical Engineering (miscellaneous) ,Water Science and Technology ,Catalysis - Published
- 2021
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47. 1,5-Hydride-Shift-Triggered Cyclization for the Synthesis of Unsymmetric Julolidines
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Viktoria A. Ikonnikova, Nadezhda S. Baleeva, Pavel N. Solyev, Vladislav A. Lushpa, Andrey A. Mikhaylov, Alexander A. Korlyukov, Mikhail S. Baranov, Alexander D. Volodin, and Vasilissa V. Shirokova
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chemistry.chemical_compound ,Scope (project management) ,Chemistry ,Hydride ,Organic Chemistry ,chemistry.chemical_element ,Scandium ,Trifluoromethanesulfonate ,Julolidine ,Combinatorial chemistry ,Catalysis - Abstract
Directly accessible 8-substituted tetrahydroquinolines undergo 1,5-hydride-shift-triggered cyclization to provide difficult to access julolidine derivatives in yields of 21–98% under scandium(III) triflate catalysis. Additionally, the scope of the reaction, several follow-up transformations and a remarkable side process discovered during optimization of the conditions are highlighted.
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- 2021
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48. Scalable Asymmetric Syntheses of Foslevodopa and Foscarbidopa Drug Substances for the Treatment of Parkinson’s Disease
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Rajarathnam E. Reddy, Soma Ghosh, Eric A. Voight, John R. Bellettini, Selvakumar Balaraman, Abhishek Ashok, Jianguo Ji, Brian J. Kotecki, David R. Hill, Timothy B. Towne, James P. Stambuli, Benoit Cardinal-David, Minshan Shou, Mark A. Matulenko, Alexander D Huters, Vincent S. Chan, Russell C. Klix, and Justin A. Simanis
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chemistry.chemical_classification ,Levodopa ,Parkinson's disease ,Double bond ,Chemistry ,Organic Chemistry ,Enantioselective synthesis ,Carbidopa ,Parkinson Disease ,Prodrug ,medicine.disease ,Combinatorial chemistry ,Pharmaceutical Preparations ,medicine ,Humans ,Moiety ,Hydrogenation ,Hydrazine (antidepressant) ,medicine.drug - Abstract
Foslevodopa (FLD, levodopa 4'-monophosphate, 3) and foscarbidopa (FCD, carbidopa 4'-monophosphate, 4) were identified as water-soluble prodrugs of levodopa (LD, 1) and carbidopa (CD, 2), respectively, which are useful for the treatment of Parkinson's disease. Herein, we describe asymmetric syntheses of FLD (3) and FCD (4) drug substances and their manufacture at pilot scale. The synthesis of FLD (3) employs a Horner-Wadsworth-Emmons olefination reaction followed by enantioselective hydrogenation of the double bond as key steps to introduce the α-amino acid moiety with the desired stereochemistry. The synthesis of FCD (4) features a Mizoroki-Heck reaction followed by enantioselective hydrazination to install the quaternary chiral center bearing a hydrazine moiety.
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- 2021
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49. Radical Functionalization of Geminal Difluoroalkenes
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Mikhail O. Zubkov, M. D. Kosobokov, and Alexander D. Dilman
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chemistry.chemical_classification ,Broad spectrum ,Geminal ,Double bond ,Chemistry ,Computational chemistry ,Organic Chemistry ,Surface modification ,Organofluorine compounds - Abstract
Geminal difluoroalkenes are readily available building blocks for the synthesis of a broad spectrum of organofluorine compounds. The review summarizes published data on radical reactions involving geminal difluoroalkenes. These processes include addition of a radical species to a double bond or one-electron reduction of the difluoroalkene fragment. Particular emphasis has been placed on photocatalytic reactions initiated by visible light.
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- 2021
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50. Ne-22 Ion-Beam Radiation Damage to DNA: From Initial Free Radical Formation to Resulting DNA-Base Damage
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Samuel Ward, David Becker, Thomas Baumann, Michael D. Sevilla, Pawel Jaruga, Miral Dizdaroglu, Melis Kant, Erdem Coskun, Alexander D. Stark, and Amitava Adhikary
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Ion beam ,Chemistry ,DNA damage ,General Chemical Engineering ,Radical ,General Chemistry ,Photochemistry ,Article ,law.invention ,chemistry.chemical_compound ,law ,Radiation damage ,Electron paramagnetic resonance ,Spectroscopy ,QD1-999 ,Free Radical Formation ,DNA - Abstract
We report on the physicochemical processes and the products of DNA damage involved in Ne-22 ion-beam radiation of hydrated (12 ± 3 H2O/nucleotide) salmon testes DNA at 77 K. Free radicals trapped at 77 K were identified using electron spin resonance (ESR) spectroscopy. The measurement of DNA damage using two different techniques of mass spectrometry revealed the formation of numerous DNA products. Results obtained by ESR spectroscopy showed that as the linear energy transfer (LET) of the ion-beam radiation increases along the beam track, the production of DNA radicals correspondingly increases until just before the Bragg peak is reached. Yields of DNA products along the ion-beam track were in excellent agreement with the radical production. This work is the first to use the combination of ESR spectroscopy and mass spectrometric techniques enabling a better understanding of mechanisms of radiation damage to DNA by heavy ion beams detailing the formation of DNA free radicals and their subsequent products.
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- 2021
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