1. Crystallographic fragment screening-based study of a novel FAD-dependent oxidoreductase from Chaetomium thermophilum
- Author
-
Mária Trundová, Leona Svecova, Petr Kolenko, Jarmila Dušková, David Sedlák, Tomáš Koval, Jindřich Hašek, Kirk Matthew Schnorr, Lars Henrik Østergaard, Jan Dohnálek, Tereza Skálová, and Jan Stránský
- Subjects
0301 basic medicine ,Models, Molecular ,FAD-dependent oxidoreductases ,Protein Conformation ,02 engineering and technology ,Crystal structure ,Chaetomium ,Addenda and Errata ,Enzyme catalysis ,Fungal Proteins ,03 medical and health sciences ,chemistry.chemical_compound ,Chaetomium thermophilum ,Structural Biology ,Oxidoreductase ,ddc:530 ,chemistry.chemical_classification ,Binding Sites ,Chemistry ,Aryl ,Substrate (chemistry) ,021001 nanoscience & nanotechnology ,Ligand (biochemistry) ,Research Papers ,crystallographic fragment screening ,Amino acid ,GMC oxidoreductases ,Crystallography ,synchrotron facilities ,030104 developmental biology ,corrigendum ,Flavin-Adenine Dinucleotide ,0210 nano-technology ,Oxidoreductases - Abstract
Acta crystallographica / Section D 77(6), 755 - 775 (2021). doi:10.1107/S2059798321003533, The FAD-dependent oxidoreductase from Chaetomium thermophilum (CtFDO) is a novel thermostable glycoprotein from the glucose–methanol–choline (GMC) oxidoreductase superfamily. However, CtFDO shows no activity toward the typical substrates of the family and high-throughput screening with around 1000 compounds did not yield any strongly reacting substrate. Therefore, protein crystallography, including crystallographic fragment screening, with 42 fragments and 37 other compounds was used to describe the ligand-binding sites of CtFDO and to characterize the nature of its substrate. The structure of CtFDO reveals an unusually wide-open solvent-accessible active-site pocket with a unique His–Ser amino-acid pair putatively involved in enzyme catalysis. A series of six crystal structures of CtFDO complexes revealed five different subsites for the binding of aryl moieties inside the active-site pocket and conformational flexibility of the interacting amino acids when adapting to a particular ligand. The protein is capable of binding complex polyaromatic substrates of molecular weight greater than 500 Da., Published by Wiley, Bognor Regis
- Published
- 2021
- Full Text
- View/download PDF