1. Enumerating regulatory T cells in cryopreserved umbilical cord blood samples using FOXP3 methylation specific quantitative PCR
- Author
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J. Alejandro Madrigal, Richard C. Duggleby, Kathryn Strange, A.J. McWhinnie, Diana Hernandez, David J. Roberts, Robert Danby, Abigail A. Lamikanra, and Hoi Pat Tsang
- Subjects
0301 basic medicine ,Physiology ,Biochemistry ,T-Lymphocytes, Regulatory ,Umbilical cord ,Cryopreservation ,Spectrum Analysis Techniques ,0302 clinical medicine ,Cellular types ,DNA methylation ,Sex Chromosomes ,Multidisciplinary ,Cell Death ,medicine.diagnostic_test ,Immune cells ,FOXP3 ,X Chromosomes ,Forkhead Transcription Factors ,Regulatory T cells ,Flow Cytometry ,Fetal Blood ,Chromatin ,Body Fluids ,Nucleic acids ,Blood ,medicine.anatomical_structure ,Real-time polymerase chain reaction ,Spectrophotometry ,Cell Processes ,030220 oncology & carcinogenesis ,White blood cells ,Medicine ,Epigenetics ,Cytophotometry ,Cord Blood Stem Cell Transplantation ,Anatomy ,DNA modification ,Chromatin modification ,Research Article ,Chromosome biology ,Cell biology ,Blood cells ,Science ,Immunology ,T cells ,Human leukocyte antigen ,Biology ,Research and Analysis Methods ,Chromosomes ,Flow cytometry ,Andrology ,03 medical and health sciences ,Genetics ,medicine ,Humans ,Medicine and health sciences ,Biology and life sciences ,DNA ,Transplantation ,030104 developmental biology ,Animal cells ,Blood Preservation ,Gene expression - Abstract
BackgroundAllogeneic haematopoietic cell transplantation (HCT) is a curative therapy for severe haematological disorders. However, it carries significant risk of morbidity and mortality. To improve patient outcomes, better graft selection strategies are needed, incorporating HLA matching with clinically important graft characteristics. Studies have shown that the cellular content of HCT grafts, specifically higher ratios of T regulatory (Tregs)/T cells, are important factors influencing outcomes when using adult peripheral blood mobilised grafts. So far, no equivalent study exists in umbilical cord blood (CB) transplantation due to the limitations of cryopreserved CB samples.Study design and methodsTo establish the most robust and efficient way to measure the Treg content of previously cryopreserved CB units, we compared the enumeration of Treg and CD3+ cells using flow cytometry and an epigenetic, DNA-based methodology. The two methods were assessed for their agreement, consistency and susceptibility to error when enumerating Treg and CD3+ cell numbers in both fresh and cryopreserved CB samples.ResultsEpigenetic enumeration gave consistent and comparable results in both fresh and frozen CB samples. By contrast, assessment of Tregs and CD3+ cells by flow cytometry was only possible in fresh samples due to significant cell death following cryopreservation and thawing.ConclusionEpigenetic assessment offers significant advantages over flow cytometry for analysing cryopreserved CB; similar cell numbers were observed both in fresh and frozen samples. Furthermore, multiple epigenetic assessments can be performed from DNA extracted from small cryopreserved CB segments; often the only CB sample available for clinical studies.
- Published
- 2020