1. Three-dimensional structural analysis reveals a Cdk5-mediated kinase cascade regulating hepatic biliary network branching in zebrafish
- Author
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Isabel Gibson, Gregory Naegele, Amit Vasanji, Takuya F. Sakaguchi, Manali Dimri, Lain X. Pierce, Allyson McClendon, Kevin Tae, and Cassandra Bilogan
- Subjects
Models, Anatomic ,0301 basic medicine ,Protein subunit ,Mutant ,Biology ,medicine.disease_cause ,Animals, Genetically Modified ,Gene Knockout Techniques ,03 medical and health sciences ,Imaging, Three-Dimensional ,Biliary atresia ,Morphogenesis ,medicine ,Animals ,Computer Simulation ,Protein Kinase Inhibitors ,Molecular Biology ,Zebrafish ,Mutation ,Kinase ,Activator (genetics) ,Cyclin-dependent kinase 5 ,Lim Kinases ,Cyclin-Dependent Kinase 5 ,Cell Biology ,Anatomy ,Zebrafish Proteins ,medicine.disease ,biology.organism_classification ,Cell biology ,Bile Ducts, Intrahepatic ,030104 developmental biology ,Actin Depolymerizing Factors ,p21-Activated Kinases ,nervous system ,Biochemistry ,Larva ,Algorithms ,Signal Transduction ,Research Article ,Developmental Biology - Abstract
The intrahepatic biliary network is a highly branched three-dimensional network lined by biliary epithelial cells, but how its branching patterns are precisely established is not clear. We designed a new computer-based algorithm that quantitatively computes the structural differences of the three-dimensional networks. Utilizing the algorithm, we showed that inhibition of Cyclin-dependent kinase 5 (Cdk5) led to reduced branching in the intrahepatic biliary network in zebrafish. Further, we identified a previously unappreciated downstream kinase cascade regulated by Cdk5. Pharmacological manipulations of this downstream kinase cascade produced a crowded branching defect in the intrahepatic biliary network and influenced actin dynamics in biliary epithelial cells. We generated larvae carrying a mutation in cdk5 regulatory subunit 1a (cdk5r1a), an essential activator of Cdk5. cdk5r1a mutant larvae show similar branching defects as those observed in Cdk5 inhibitor-treated larvae. A small-molecule compound that interferes with the downstream kinase cascade rescued the mutant phenotype. These results provide new insights into branching morphogenesis of the intrahepatic biliary network.
- Published
- 2017
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